Stk38l (serine/threonine kinase 38 like) - Rat Genome Database

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Gene: Stk38l (serine/threonine kinase 38 like) Ictidomys tridecemlineatus
Analyze
Symbol: Stk38l
Name: serine/threonine kinase 38 like
RGD ID: 12638895
Description: ENCODES a protein that exhibits ATP binding (inferred); magnesium ion binding (inferred); protein serine/threonine kinase activity (inferred); INVOLVED IN postsynapse organization (ortholog); ASSOCIATED WITH genetic disease (ortholog); retinal degeneration (ortholog); FOUND IN glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serine/threonine kinase 38 like, transcript variant X1; serine/threonine kinase 38 like, transcript variant X2; serine/threonine kinase 38 like, transcript variant X3; serine/threonine-protein kinase 38-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494582,336,084 - 82,409,699 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936548258,106 - 332,652 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936548257,959 - 332,545 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Stk38l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494582,336,084 - 82,409,699 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936548258,106 - 332,652 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936548257,959 - 332,545 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STK38L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381227,244,286 - 27,325,959 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1227,243,968 - 27,325,959 (+)EnsemblGRCh38hg38GRCh38
GRCh371227,397,219 - 27,478,892 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361227,288,373 - 27,369,795 (+)NCBINCBI36Build 36hg18NCBI36
Build 341227,288,374 - 27,369,794NCBI
Celera1232,542,971 - 32,624,487 (+)NCBICelera
Cytogenetic Map12p11.23NCBI
HuRef1227,166,484 - 27,247,993 (+)NCBIHuRef
CHM1_11227,361,286 - 27,442,760 (+)NCBICHM1_1
T2T-CHM13v2.01227,116,250 - 27,197,594 (+)NCBIT2T-CHM13v2.0
Stk38l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396146,626,428 - 146,680,312 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6146,626,493 - 146,680,310 (+)EnsemblGRCm39 Ensembl
GRCm386146,724,930 - 146,778,814 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6146,724,995 - 146,778,812 (+)EnsemblGRCm38mm10GRCm38
MGSCv376146,673,452 - 146,727,336 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366146,682,178 - 146,735,977 (+)NCBIMGSCv36mm8
Celera6149,764,413 - 149,820,410 (+)NCBICelera
Cytogenetic Map6G3NCBI
cM Map677.7NCBI
Stk38l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84181,346,969 - 181,423,844 (+)NCBIGRCr8
mRatBN7.24179,616,288 - 179,693,177 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4179,634,275 - 179,690,983 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4185,919,747 - 185,976,152 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04181,704,262 - 181,760,667 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04180,324,697 - 180,381,107 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04181,027,212 - 181,089,735 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4181,027,212 - 181,089,740 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04245,213,201 - 245,245,025 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44184,316,579 - 184,392,709 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4168,150,057 - 168,185,733 (+)NCBICelera
Cytogenetic Map4q44NCBI
Stk38l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540543,317,726 - 43,390,265 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540543,364,474 - 43,389,618 (+)NCBIChiLan1.0ChiLan1.0
STK38L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21069,487,827 - 69,568,698 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11269,484,225 - 69,565,095 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01258,985,367 - 59,066,274 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11261,603,456 - 61,645,899 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1261,603,462 - 61,645,899 (-)Ensemblpanpan1.1panPan2
STK38L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12720,429,370 - 20,509,876 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2720,429,372 - 20,510,059 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2725,878,589 - 25,959,110 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02720,624,441 - 20,704,954 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2720,621,810 - 20,704,996 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12720,429,279 - 20,509,770 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02720,458,152 - 20,538,114 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02726,041,241 - 26,121,753 (+)NCBIUU_Cfam_GSD_1.0
STK38L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl546,493,675 - 46,574,697 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1546,490,981 - 46,574,716 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2550,042,869 - 50,126,545 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STK38L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11126,981,109 - 27,060,560 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1127,018,534 - 27,060,579 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660698,000,235 - 8,079,538 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stk38l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475050,591 - 134,481 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000001341   ⟹   ENSSTOP00000001201
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936548258,106 - 332,652 (-)Ensembl
RefSeq Acc Id: XM_005328876   ⟹   XP_005328933
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494582,336,084 - 82,409,699 (-)NCBI
SpeTri2.0NW_004936548257,959 - 332,535 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021728793   ⟹   XP_021584468
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494582,336,084 - 82,409,665 (-)NCBI
SpeTri2.0NW_004936548261,436 - 332,545 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021728794   ⟹   XP_021584469
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494582,336,084 - 82,381,333 (-)NCBI
SpeTri2.0NW_004936548261,436 - 304,204 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040280871   ⟹   XP_040136805
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494582,336,084 - 82,361,778 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_005328933   ⟸   XM_005328876
- Peptide Label: isoform X1
- UniProtKB: I3LYE5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021584468   ⟸   XM_021728793
- Peptide Label: isoform X1
- UniProtKB: I3LYE5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021584469   ⟸   XM_021728794
- Peptide Label: isoform X1
- UniProtKB: I3LYE5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040136805   ⟸   XM_040280871
- Peptide Label: isoform X2
RefSeq Acc Id: ENSSTOP00000001201   ⟸   ENSSTOT00000001341
Protein Domains
AGC-kinase C-terminal   Protein kinase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000001333 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000001341.3 UniProtKB/TrEMBL
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro AGC-kinase_C UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  Pkinase_C UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
NCBI Gene Stk38l ENTREZGENE
PANTHER SERINE/THREONINE-PROTEIN KINASE UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN KINASE 38-LIKE UniProtKB/TrEMBL
Pfam Pkinase UniProtKB/TrEMBL
  Pkinase_C UniProtKB/TrEMBL
PROSITE AGC_KINASE_CTER UniProtKB/TrEMBL
  PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
SMART S_TKc UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/TrEMBL
UniProt I3LYE5 ENTREZGENE, UniProtKB/TrEMBL