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Gene: Ttf1 (transcription termination factor 1) Ictidomys tridecemlineatus

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Symbol:

Ttf1

Name:

transcription termination factor 1

RGD ID:

12638546

Description:

ENCODES a protein that exhibits chromatin binding (inferred); DNA binding (inferred); INVOLVED IN chromatin remodeling (inferred); termination of RNA polymerase I transcription (inferred); transcription by RNA polymerase I (inferred); PARTICIPATES IN RNA polymerase I transcription pathway; ASSOCIATED WITH congenital nongoitrous hypothyroidism 2 (ortholog); developmental and epileptic encephalopathy (ortholog); developmental and epileptic encephalopathy 14 (ortholog); FOUND IN fibrillar center (inferred); nucleolus (inferred); nucleoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

transcription termination factor 1, transcript variant X1; transcription termination factor 1, transcript variant X2; transcription termination factor 1, transcript variant X3; transcription termination factor 1, transcript variant X4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	199,188,472 - 199,215,336 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	18,956,899 - 18,983,888 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	18,956,364 - 18,983,850 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ttf1	Squirrel	congenital nongoitrous hypothyroidism 2		ISO	TTF1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Hypothyroidism more ...	ClinVar	PMID:25741868
Ttf1	Squirrel	developmental and epileptic encephalopathy		ISO	TTF1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Developmental and epileptic encephalopathy	ClinVar	PMID:28492532
Ttf1	Squirrel	developmental and epileptic encephalopathy 14		ISO	TTF1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Developmental and epileptic encephalopathy and 14	ClinVar	PMID:28492532
Ttf1	Squirrel	early infantile epileptic encephalopathy		ISO	TTF1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Early infantile epileptic encephalopathy	ClinVar	PMID:28492532
Ttf1	Squirrel	Ehlers-Danlos syndrome classic type 1		ISO	TTF1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Ehlers-Danlos syndrome and classic type	ClinVar	PMID:28492532
Ttf1	Squirrel	Leigh disease		ISO	TTF1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Leigh syndrome	ClinVar	PMID:28492532
Ttf1	Squirrel	primary coenzyme Q10 deficiency 7		ISO	TTF1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Neonatal encephalomyopathy-cardiomyopathy-respiratory distress syndrome	ClinVar	PMID:28492532
Ttf1	Squirrel	Rafiq syndrome		ISO	TTF1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Rafiq syndrome	ClinVar	PMID:28492532
Ttf1	Squirrel	tuberous sclerosis 1		ISO	TTF1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Tuberous sclerosis 1	ClinVar	PMID:28492532

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ttf1	Squirrel	lung adenocarcinoma		ISO	TTF1 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:25851810

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ttf1	Squirrel	chromatin remodeling	acts_upstream_of_or_within	IEA	UniProtKB:Q62187 and ensembl:ENSMUSP00000097809	150520179		Ensembl	GO_REF:0000107
Ttf1	Squirrel	termination of RNA polymerase I transcription	involved_in	IEA	PANTHER:PTN000067850	150520179		TreeGrafter	GO_REF:0000118
Ttf1	Squirrel	termination of RNA polymerase I transcription	acts_upstream_of_or_within	IEA	UniProtKB:Q62187 and ensembl:ENSMUSP00000097809	150520179		Ensembl	GO_REF:0000107
Ttf1	Squirrel	transcription by RNA polymerase I	involved_in	IEA	UniProtKB:Q62187 and ensembl:ENSMUSP00000097809	150520179		Ensembl	GO_REF:0000107
Ttf1	Squirrel	transcription initiation at RNA polymerase I promoter	acts_upstream_of_or_within	IEA	UniProtKB:Q62187 and ensembl:ENSMUSP00000097809	150520179		Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ttf1	Squirrel	fibrillar center	located_in	IEA	UniProtKB:Q15361 and ensembl:ENSP00000333920	150520179		Ensembl	GO_REF:0000107
Ttf1	Squirrel	nucleolus	located_in	IEA	PANTHER:PTN000067850	150520179		TreeGrafter	GO_REF:0000118
Ttf1	Squirrel	nucleolus	located_in	IEA	UniProtKB:Q62187 and ensembl:ENSMUSP00000097809	150520179		Ensembl	GO_REF:0000107
Ttf1	Squirrel	nucleoplasm	located_in	IEA	UniProtKB:Q62187 and ensembl:ENSMUSP00000097809	150520179		Ensembl	GO_REF:0000107
Ttf1	Squirrel	nucleus	located_in	IEA	UniProtKB:Q62187 and ensembl:ENSMUSP00000097809	150520179		Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ttf1	Squirrel	chromatin binding	enables	IEA	PANTHER:PTN000067850	150520179		TreeGrafter	GO_REF:0000118
Ttf1	Squirrel	chromatin binding	enables	IEA	UniProtKB:Q62187 and ensembl:ENSMUSP00000097809	150520179		Ensembl	GO_REF:0000107
Ttf1	Squirrel	DNA binding	enables	IEA	UniProtKB:Q62187 and ensembl:ENSMUSP00000097809	150520179		Ensembl	GO_REF:0000107
Ttf1	Squirrel	protein binding	enables	ISO	UniProtKB:Q64364	9068941	PMID:20513429	UniProt	PMID:20513429
Ttf1	Squirrel	protein binding	enables	ISO	UniProtKB:O54724	9068941	PMID:10589839 and PMID:27528195	UniProt	PMID:10589839 and PMID:27528195
Ttf1	Squirrel	protein binding	enables	ISO	UniProtKB:Q91YE5	9068941	PMID:19578370	UniProt	PMID:19578370
Ttf1	Squirrel	protein binding	enables	ISO	PR:Q91YE5	9068941	PMID:11532953	MGI	PMID:11532953
Ttf1	Squirrel	protein binding	enables	ISO	UniProtKB:Q9UIF9	9068941	PMID:11532953	IntAct	PMID:11532953
Ttf1	Squirrel	protein binding	enables	ISO	UniProtKB:Q96C12	9068941	PMID:28169274	GO_Central	PMID:28169274

RGD Manual Annotations

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ttf1	Squirrel	RNA polymerase I transcription pathway		ISO	Ttf1 (Mus musculus)	9068941		RGD	PMID:23092677 and REF_RGD_ID:9588249

Ttf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	199,188,472 - 199,215,336 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	18,956,899 - 18,983,888 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	18,956,364 - 18,983,850 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TTF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	132,375,548 - 132,406,840 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	132,375,548 - 132,406,851 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	135,250,935 - 135,282,227 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	134,240,756 - 134,272,042 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	132,280,492 - 132,311,775	NCBI
Celera	9	105,792,754 - 105,824,048 (-)	NCBI		Celera
Cytogenetic Map	9	q34.13	NCBI
HuRef	9	104,744,257 - 104,775,555 (-)	NCBI		HuRef
CHM1_1	9	135,400,954 - 135,432,252 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	144,590,014 - 144,621,286 (-)	NCBI		T2T-CHM13v2.0

Ttf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	28,950,211 - 28,977,668 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	28,950,274 - 28,977,668 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	29,060,199 - 29,087,656 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	29,060,262 - 29,087,656 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	28,915,783 - 28,943,170 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	28,882,286 - 28,909,115 (+)	NCBI		MGSCv36	mm8
Celera	2	28,766,271 - 28,793,645 (+)	NCBI		Celera
Cytogenetic Map	2	A3	NCBI
cM Map	2	19.38	NCBI

Ttf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	32,782,544 - 32,807,202 (+)	NCBI		GRCr8
mRatBN7.2	3	12,384,626 - 12,409,257 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	12,384,655 - 12,409,257 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	3	7,635,630 - 7,660,153 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	7,635,933 - 7,660,673 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	12,984,215 - 13,008,867 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	8,067,017 - 8,086,185 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	7,163,853 - 7,188,383 (+)	NCBI		Celera
Cytogenetic Map	3	p12	NCBI

Ttf1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955513	1,804,690 - 1,829,705 (-)	NCBI	ChiLan1.0	ChiLan1.0

TTF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	6,950,839 - 6,980,899 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	6,953,176 - 6,983,236 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	103,495,737 - 103,525,775 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	132,129,318 - 132,158,660 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	132,129,318 - 132,158,660 (-)	Ensembl	panpan1.1		panPan2

TTF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	51,855,565 - 51,881,000 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	51,855,559 - 51,878,459 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	51,120,246 - 51,145,642 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	52,748,649 - 52,774,067 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	52,746,666 - 52,772,199 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	51,528,526 - 51,553,908 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	51,852,982 - 51,876,680 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	51,939,290 - 51,964,688 (+)	NCBI		UU_Cfam_GSD_1.0

TTF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	272,180,498 - 272,212,478 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	272,180,488 - 272,212,504 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	306,231,749 - 306,244,296 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TTF1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	5,734,136 - 5,763,768 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	5,738,166 - 5,764,533 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666079	9,856,700 - 9,886,986 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ttf1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624760	3,893,665 - 3,918,237 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005321104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021723667	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021723668	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021723669	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040286532	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005734178	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000007956 ⟹ ENSSTOP00000007120

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936487	18,956,899 - 18,983,888 (-)	Ensembl

Ensembl Acc Id:

ENSSTOT00000030379 ⟹ ENSSTOP00000025560

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936487	18,956,899 - 18,983,888 (-)	Ensembl

RefSeq Acc Id:

XM_005321104 ⟹ XP_005321161

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	199,188,472 - 199,215,336 (-)	NCBI
SpeTri2.0	NW_004936487	18,956,364 - 18,983,850 (-)	NCBI

Sequence:

show sequence

GGCGGCAGCACTTCCGGGTTAGAAGGCTGGCTGCGACGGTCCTGAGGGGAATAAAATGGAAGGAGAGTCAAACAGATTTGAGATTCATACTCCAGTTTTTGACAAGAAGAACAAAAAGTACTTTGCAT
ATAAGGAAAGACCCCAGAAACATGCCCATGAAAGTTTCAGAATCTCCTCTCTGGAAGGTGACCAGCTTCAAATAACTAAGAGTAAGAAGAAAAAAGATTTCCAGCTTCTAATTTCTTCTCCTTTGAAA
AAACCAGAAATCTGTGATCAGACTGAAAAGGCTACTTCTACAAACAAGAAGAAGAAAAAGAGGAGAAAGAGTGCTCTGGGGGTAGACCCGGAAACAGGGGTTGCTTATGTCCTCGTGGATAAAGAAAA
CATTGAGAACACGCCCAAGAACTTGGGGAGAGACGTGGATGTCGTCTATGTAGATATCAGCAGAGAGCAAAACTCAGCAGAAGGGTGTGTGGTGGGTGAGCACACGGCCACTGAGTCTCCTAAAGGTG
GGCCAGAGGAGCCGTGGAGCGGAGCCAGGGGGAGAAAGAGTCGGAGCCAGCCGGGGGGAGTTGCAGCACCCCAGGGCCCTCAAGGGAGCATTGTCCTGCCCCAGCCGGAGTCACGGGCGCAGCCACCC
TTGTTTTCTCTGAGCCTTGAAGGGGAAATCTCAGAACCACCAATGTCCACTGGTAAAAAGAAGTCTAAGAAAAAAAAGAGGAAAAGGTCCAGCGTGCAGGAGTGGGAAGCCTCAGCGGAGCCTGGGGA
TCTAGCTCACCATCCCTCTGAAGAACCTCAGATGGCCATTGAAGCAGAGGCTGGAGAAGGCAGTGACACACTAAAGAGGGTGAGAAGGTCCAGTGCTGTGAAGAAGGCCAAGAGGAGGAGACATGTCT
CCGCGGAAAGCCCTGTGGAGTCTGGTGGTTCTTCAGCACTGGATGAAAACTCTGGGAACACGCGCTCTGGTTCACTGGAGGGCGAAAGCACCATGATGGAAGAAAGGGTAACAGTCCGGTCCCTAGAG
GGGAGAGCCCAGGCCGCGCAGGGGGAGAAGCAGGTGCCAGAGGCGCAGAGGTTAAACCCTGCAGTTGAGGAAGAGCATGGCTTGGCATTGCCTGGGGATTCCACGGCAAGATGTTTATCTGAAGAGCA
GAGAGAGTCTGGTGACTCAGATGTGGACTTGGATTCCGCTGTGAGGCAGCTCCAGGAGTTCATTCCTGACATAAAGGACAGGGCTGCCACTACCATCAAGCGGATGTACCGTGACGACTTGGGACGGT
TTAAAGAATTTAAAGCTCAGGGTATTGCTATTAGATTTGGCAAATTTTCTGCAAAGGAAAATAAGCAGATAGAGAAAAATGTGCAAGAATTTCTGTCTCTGACAGGAATTGAAAATGCAGACAAGCTG
CTATACACAGACAGATACCCAGAGGAGAAGTCTGCCATTACTGAATTGAAAAGAAAGCATGCGTTTAGGGTGCACATTGGTAAGGGCATTGCTCGGCCCTGGAAACTCGTATACTATCGAGCAAAGAA
GATGTTCGATGTCAATAATTACAAAGGCAGGTATAGCCAAGGAGATACGGAGAAGTTGAAGGCATACCATTCCCTCCACGGGAACGACTGGAAAAAGATTGGAGCCATGGTGGCCCGAAGCAGCCTCT
CGGTTGCCCTGAAGTTCTCCCAGATCAGCAGTCAAAGAAATCATGGTGCTTGGAATAAGACGGAAACACAGAGGCTCATCAAGGCTGTTGAAGAGGTGATTTTAAAGAAAATGTCTCCCCAGGAGATG
GAAGAGATGGATTCACAGCTCCAAGAGAATCCTGAAGGTCGCCTGTCAATCGTCCGGGAAAAACTCTACAAGGGCATATCCTGGGTGGAAGTGGAAGCTAAAGTGGAAACCAGAAATTGGATGCAGTG
CAAAAGTAAGTGGACGGAAATTCTGACCAAGAGGATGACTAATGGTGGGTTTGTGTATCGTGGAGTGAATGCGCTGCAGGCCAAAATCAACCTTATTGAAAGGTTATATGAAATAAATGTGGAAGACG
CCAATGAAATAGATTGGGAAGATCTTGCTAGTGCCATAGGCGATGTGCCTCCATCTTATGTTCAAACTAAGTTTTATAAGTTGAAGGCGGCCTGTGTTCCCTTTTGGCAGAGAAAGACGTTTCCAGAG
ATCATCGACTACCTTTACAAGACTAGTCTACCTGTGCTTAAAGAAAAGTTAAAAAAGAAGATGGCGAGAAAAGGGACCAGAATCCAGACTCCCACAGCACCGAAGCAGGTTTTCCTATTTAGAGATAT
CTTTCATTCTGAAGACGATAGTGAAGGAGAAGACACAGAAGAACAAAGTTAAGCAGAGGGCTCAGGTGCAGTTCGTTCCTGGTGCAGAAAGGCGAGAGGTGGATGTGTGGATCTTCTCTTCCTCCAAC
TGGTGTGTGTCACTGCTTGCACACCCCGTCTGCCTGGACTCTAGTGTCTGTGAATGGTACTCCTCATATCAGCTGTCCTCTGAAAGCTGGTTACTGCGTTCATGTGGTGTCCAGCTGAACAAAAAGAG
GAGCAGCAGTTTCTTCTGTCGTTGTTTGAAAGCCTGGCTCTGAGGCTTGTCGGAAGCCTCAGGACAACTCCTGCTGGGTTTTCAAGGGTAATTTTAGCGGCAGGCTTTTCTGTCATTCAGGAAAGCAA
AACAGAGAATTTGTTGGGCTTTAGGTTACAAAGGTTGTTAAATGGAATGAAGGAGTCAGCATGGGGTGGGGGGGCGTTGGATTATCCAGAGTTTGGGACTATACAGGTAGCTGTTGTAGCCCCTGCAT
GGGGCACTGATGCCTCTTTGCCTCCCAGCACCTCCATGAACCCCTGGCTGTCCACTGCTGCTGCCCTCATGGCAGCCTGTGCACATGTCCCTTCGCCAACATGTACCTCTATAGGAACATGTGTCTCC
ACGCTATATAAGGGCTTCTGCCTCCTCCTGCCTTCTAGTCTCCGAGTGCCTTGTGTGGGCCGCCCCGTAGCAGAACCCTGCAACAAGGGCATCTGGGCCACCTGTACAGGAGAAGAAAGTGGCTAAAC
GTGGGCTGTCAGTGCCGAGTGTGGCTCCACTGTGTCCTCAGGGCTGAGTGGTTCACACAATACTTGTCAGGTAAGCACTGTGCCACTGAGCCACACCCCATCAGAATATGCAGAGAATTTGGGGTGTG
TGTTGCTGGGGATCTAGCCCAGGGCCTGTGGATGCCAGACATGTGCTACAGCACTGTGTGCAGCACCCCTGACTGGTTACTAGGCTACAGTGCCCTGCCTGTGCCCAGACCTGCCACCTGGGGAGACG
GAAGAGGGGTGAGAGTCTTATTCACCACTGTATCCCCAGCACCTGTCACAGTGTCATGCAAAAAATGGACACACAATAAATATAAACTAAATGAATATTGTCTTAGTGAGAATCTCTCCTGTGGTCAG
CTCCTATCCCTAGACATGCCAGTCTCCATGCTGATGGGACAATAAATGCTGTATTCCTTTTGGAGGACAATTTGGTAAGACTCATCAGAGCCTGAAGAATGTACATGTTCTATGACCATCAATTTTTA
AGAATTTGTCCTGTAATATTTGTAATAGGAAACTTGTTAAATTATGGTATATCCCTAGAATATTGCACAGTGTTTAGAAATGATAATAACAGGTTTGATTGATGTGAAATATTTCAGAAGAGTATATA
TATATATATATTTTCTCAATTTTGTAAAAGTAAAAAAATTAAGGAAATTGTGTATGTAGAAGCATTAAAGTGAATGAAATGAACCCAAGATGTTGATGTCAACACTGGTTCTCTCTGGGCAGCGGGAT
TGTGAGTTTGTAACACAGAACTCTTTGACGTGCTGGGGTTTGAGCCCAGGTCCTGGGACGTGCCTGACAAGTGCTCTCCCTGATTCACAGGCACAGTCCTAGTCTAGAACTCTTGACTGCATCTGCAG
CAAGACAGACTCACACAGCCCTCTGTGTCTTGGACTCAGCATTAGTTCAGCTCCTCTGGTCTCCAGAGATGTGGTTCCCAGCTGATTCTCCACTGTCCCTCTGCAAAGTCTGTTTTATCTGAGTCCAC
ACATACAGTCCCTCAGCCCCCAAGACAGGCTCTCATAGCCTCACTTCAGTCTTCCCTCCGTCAACCCAGAAGAGAAAAGAGATTGTCTTCCTCTTCCTGCTGAGGCCCTGGTGTTGTTCCGTGACCCA
CAGAGCACATGCCCGGCTGAGTGCTCACTGTAACCTGGAAGATGGGACTGGCTCCAGCCCGTGGGCCCAACTCAAGCTGCGATCTAGCTGAGTTGGTAAATCCCCCAGTGGAATGTCTCATGGGTTCT
GTGAGCAGACAAACGGGTGAATGGACTTTGAGGAAGCGACCCACAACTGTGTGTGTGACAGTGGGTGATTACTTGAACTATAAATTTTACCCAGTGACTGTGTACTTTGTAAGTTTTACTTTGTAGTT
TTTTTCTCACTTATCTCCCTGCCTCTAACCCTCAAAATGGGCATACAGAAGCAAACCATATGCATCTTACCTTTGTCAATCATCTGTTTTACATGTAAGAATCCAGGAACTTGCAAGGAAAAACAGGG
GAGGTGGTATGTGTCGAGGGAAGTAGAGTAGGTTGCCTGGGGAAGCCATGAATATGTTTTGGGTGGTGCAGACCTTGCATTAGGGCACATTTGAGCAGACTCCCAGTCTTGTACAAGAGAATGTGCTG
AAGAGGAAAGCCTGCTGGAGAGATGGATTCAGGGGCTCACTCCGTGAAAATCAGAGCTGACTTGGCAAGACTGAGGCCCCAGAGTGGGCAAGAGAGGGCGGGGGTGGGGGTGCAGTGAGAGGAAGGAA
GGTGAGTAGACTTGGATAAAGACAGAAACCCACCCTTCCCACAGGAAGCAGCCTGGGATGACAGAAGTTGTTTTTAAACAGCCATGATTGCCTTATGAGGGTCCATGGCCCAGCTGCTGATGGGCTGC
ACTTTCCTGTACCAGTGTTTCAGCTATTTATTGTCTCTTACAGCCTCCATTAGCCAACAAAGGCCCAGGACTCTGCAGTACATAAACAGCAGCTC

hide sequence

RefSeq Acc Id:

XM_021723667 ⟹ XP_021579342

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	199,188,472 - 199,215,264 (-)	NCBI
SpeTri2.0	NW_004936487	18,956,364 - 18,983,796 (-)	NCBI

Sequence:

show sequence

TGGAGGGCATGGGAGTTGGCGGGGTCCTGGTGGCCGAGCGCCAGCTGGCGACCGTGATGACCTCGTTATCCTGGGACGCGCGGGGGCGCAGGGCGGCCGGCGTCGCTTACTCCTGGCCTCGCCACCCG
GAACTGAGGCGGACGGCGTGGGAGGCCCGAAGTCCGCCTCACCTCGCCGCCCGGAGGTGGCGGGGACTGCGAACGGCGCGTGCTCGATGGGGGAGCTGTTGGCCCCGTCGGTCGGATAAGTTTCGAGC
CCTGGGGAGCCGTTCGCGAGCGAGGGGACCAGGCCCGCCTGAGGGCCGCGGGTTCTGCGCGGGGAAGCCGGGTGCACCCAGGGGCCCGGGACGCTGGAGAAAGGGGCCCCCGTGCCTGGCCCGGTTGA
AGGGAGGAGGGCGGCGCGGAGGAAGAGCGGTCTTTGCCGGGCCCGGGAGGAGTCGGAGCATGGTGTGTTGTGGGAACTGAGGGACGGCGGCGTCCGACACCCAGCCCAGGTGAGAGGTGGATTGCTGG
GCCGACGGGGCGGATCATGACCAATCCTAGAGCCTTGTGGTCGCGGAGCCGTAAAAAGTTTTTAGCAGGAATAAAATGGAAGGAGAGTCAAACAGATTTGAGATTCATACTCCAGTTTTTGACAAGAA
GAACAAAAAGTACTTTGCATATAAGGAAAGACCCCAGAAACATGCCCATGAAAGTTTCAGAATCTCCTCTCTGGAAGGTGACCAGCTTCAAATAACTAAGAGTAAGAAGAAAAAAGATTTCCAGCTTC
TAATTTCTTCTCCTTTGAAAAAACCAGAAATCTGTGATCAGACTGAAAAGGCTACTTCTACAAACAAGAAGAAGAAAAAGAGGAGAAAGAGTGCTCTGGGGGTAGACCCGGAAACAGGGGTTGCTTAT
GTCCTCGTGGATAAAGAAAACATTGAGAACACGCCCAAGAACTTGGGGAGAGACGTGGATGTCGTCTATGTAGATATCAGCAGAGAGCAAAACTCAGCAGAAGGGTGTGTGGTGGGTGAGCACACGGC
CACTGAGTCTCCTAAAGGTGGGCCAGAGGAGCCGTGGAGCGGAGCCAGGGGGAGAAAGAGTCGGAGCCAGCCGGGGGGAGTTGCAGCACCCCAGGGCCCTCAAGGGAGCATTGTCCTGCCCCAGCCGG
AGTCACGGGCGCAGCCACCCTTGTTTTCTCTGAGCCTTGAAGGGGAAATCTCAGAACCACCAATGTCCACTGGTAAAAAGAAGTCTAAGAAAAAAAAGAGGAAAAGGTCCAGCGTGCAGGAGTGGGAA
GCCTCAGCGGAGCCTGGGGATCTAGCTCACCATCCCTCTGAAGAACCTCAGATGGCCATTGAAGCAGAGGCTGGAGAAGGCAGTGACACACTAAAGAGGGTGAGAAGGTCCAGTGCTGTGAAGAAGGC
CAAGAGGAGGAGACATGTCTCCGCGGAAAGCCCTGTGGAGTCTGGTGGTTCTTCAGCACTGGATGAAAACTCTGGGAACACGCGCTCTGGTTCACTGGAGGGCGAAAGCACCATGATGGAAGAAAGGG
TAACAGTCCGGTCCCTAGAGGGGAGAGCCCAGGCCGCGCAGGGGGAGAAGCAGGTGCCAGAGGCGCAGAGGTTAAACCCTGCAGTTGAGGAAGAGCATGGCTTGGCATTGCCTGGGGATTCCACGGCA
AGATGTTTATCTGAAGAGCAGAGAGAGTCTGGTGACTCAGATGTGGACTTGGATTCCGCTGTGAGGCAGCTCCAGGAGTTCATTCCTGACATAAAGGACAGGGCTGCCACTACCATCAAGCGGATGTA
CCGTGACGACTTGGGACGGTTTAAAGAATTTAAAGCTCAGGGTATTGCTATTAGATTTGGCAAATTTTCTGCAAAGGAAAATAAGCAGATAGAGAAAAATGTGCAAGAATTTCTGTCTCTGACAGGAA
TTGAAAATGCAGACAAGCTGCTATACACAGACAGATACCCAGAGGAGAAGTCTGCCATTACTGAATTGAAAAGAAAGCATGCGTTTAGGGTGCACATTGGTAAGGGCATTGCTCGGCCCTGGAAACTC
GTATACTATCGAGCAAAGAAGATGTTCGATGTCAATAATTACAAAGGCAGGTATAGCCAAGGAGATACGGAGAAGTTGAAGGCATACCATTCCCTCCACGGGAACGACTGGAAAAAGATTGGAGCCAT
GGTGGCCCGAAGCAGCCTCTCGGTTGCCCTGAAGTTCTCCCAGATCAGCAGTCAAAGAAATCATGGTGCTTGGAATAAGACGGAAACACAGAGGCTCATCAAGGCTGTTGAAGAGGTGATTTTAAAGA
AAATGTCTCCCCAGGAGATGGAAGAGATGGATTCACAGCTCCAAGAGAATCCTGAAGGTCGCCTGTCAATCGTCCGGGAAAAACTCTACAAGGGCATATCCTGGGTGGAAGTGGAAGCTAAAGTGGAA
ACCAGAAATTGGATGCAGTGCAAAAGTAAGTGGACGGAAATTCTGACCAAGAGGATGACTAATGGTGGGTTTGTGTATCGTGGAGTGAATGCGCTGCAGGCCAAAATCAACCTTATTGAAAGGTTATA
TGAAATAAATGTGGAAGACGCCAATGAAATAGATTGGGAAGATCTTGCTAGTGCCATAGGCGATGTGCCTCCATCTTATGTTCAAACTAAGTTTTATAAGTTGAAGGCGGCCTGTGTTCCCTTTTGGC
AGAGAAAGACGTTTCCAGAGATCATCGACTACCTTTACAAGACTAGTCTACCTGTGCTTAAAGAAAAGTTAAAAAAGAAGATGGCGAGAAAAGGGACCAGAATCCAGACTCCCACAGCACCGAAGCAG
GTTTTCCTATTTAGAGATATCTTTCATTCTGAAGACGATAGTGAAGGAGAAGACACAGAAGAACAAAGTTAAGCAGAGGGCTCAGGTGCAGTTCGTTCCTGGTGCAGAAAGGCGAGAGGTGGATGTGT
GGATCTTCTCTTCCTCCAACTGGTGTGTGTCACTGCTTGCACACCCCGTCTGCCTGGACTCTAGTGTCTGTGAATGGTACTCCTCATATCAGCTGTCCTCTGAAAGCTGGTTACTGCGTTCATGTGGT
GTCCAGCTGAACAAAAAGAGGAGCAGCAGTTTCTTCTGTCGTTGTTTGAAAGCCTGGCTCTGAGGCTTGTCGGAAGCCTCAGGACAACTCCTGCTGGGTTTTCAAGGGTAATTTTAGCGGCAGGCTTT
TCTGTCATTCAGGAAAGCAAAACAGAGAATTTGTTGGGCTTTAGGTTACAAAGGTTGTTAAATGGAATGAAGGAGTCAGCATGGGGTGGGGGGGCGTTGGATTATCCAGAGTTTGGGACTATACAGGT
AGCTGTTGTAGCCCCTGCATGGGGCACTGATGCCTCTTTGCCTCCCAGCACCTCCATGAACCCCTGGCTGTCCACTGCTGCTGCCCTCATGGCAGCCTGTGCACATGTCCCTTCGCCAACATGTACCT
CTATAGGAACATGTGTCTCCACGCTATATAAGGGCTTCTGCCTCCTCCTGCCTTCTAGTCTCCGAGTGCCTTGTGTGGGCCGCCCCGTAGCAGAACCCTGCAACAAGGGCATCTGGGCCACCTGTACA
GGAGAAGAAAGTGGCTAAACGTGGGCTGTCAGTGCCGAGTGTGGCTCCACTGTGTCCTCAGGGCTGAGTGGTTCACACAATACTTGTCAGGTAAGCACTGTGCCACTGAGCCACACCCCATCAGAATA
TGCAGAGAATTTGGGGTGTGTGTTGCTGGGGATCTAGCCCAGGGCCTGTGGATGCCAGACATGTGCTACAGCACTGTGTGCAGCACCCCTGACTGGTTACTAGGCTACAGTGCCCTGCCTGTGCCCAG
ACCTGCCACCTGGGGAGACGGAAGAGGGGTGAGAGTCTTATTCACCACTGTATCCCCAGCACCTGTCACAGTGTCATGCAAAAAATGGACACACAATAAATATAAACTAAATGAATATTGTCTTAGTG
AGAATCTCTCCTGTGGTCAGCTCCTATCCCTAGACATGCCAGTCTCCATGCTGATGGGACAATAAATGCTGTATTCCTTTTGGAGGACAATTTGGTAAGACTCATCAGAGCCTGAAGAATGTACATGT
TCTATGACCATCAATTTTTAAGAATTTGTCCTGTAATATTTGTAATAGGAAACTTGTTAAATTATGGTATATCCCTAGAATATTGCACAGTGTTTAGAAATGATAATAACAGGTTTGATTGATGTGAA
ATATTTCAGAAGAGTATATATATATATATATTTTCTCAATTTTGTAAAAGTAAAAAAATTAAGGAAATTGTGTATGTAGAAGCATTAAAGTGAATGAAATGAACCCAAGATGTTGATGTCAACACTGG
TTCTCTCTGGGCAGCGGGATTGTGAGTTTGTAACACAGAACTCTTTGACGTGCTGGGGTTTGAGCCCAGGTCCTGGGACGTGCCTGACAAGTGCTCTCCCTGATTCACAGGCACAGTCCTAGTCTAGA
ACTCTTGACTGCATCTGCAGCAAGACAGACTCACACAGCCCTCTGTGTCTTGGACTCAGCATTAGTTCAGCTCCTCTGGTCTCCAGAGATGTGGTTCCCAGCTGATTCTCCACTGTCCCTCTGCAAAG
TCTGTTTTATCTGAGTCCACACATACAGTCCCTCAGCCCCCAAGACAGGCTCTCATAGCCTCACTTCAGTCTTCCCTCCGTCAACCCAGAAGAGAAAAGAGATTGTCTTCCTCTTCCTGCTGAGGCCC
TGGTGTTGTTCCGTGACCCACAGAGCACATGCCCGGCTGAGTGCTCACTGTAACCTGGAAGATGGGACTGGCTCCAGCCCGTGGGCCCAACTCAAGCTGCGATCTAGCTGAGTTGGTAAATCCCCCAG
TGGAATGTCTCATGGGTTCTGTGAGCAGACAAACGGGTGAATGGACTTTGAGGAAGCGACCCACAACTGTGTGTGTGACAGTGGGTGATTACTTGAACTATAAATTTTACCCAGTGACTGTGTACTTT
GTAAGTTTTACTTTGTAGTTTTTTTCTCACTTATCTCCCTGCCTCTAACCCTCAAAATGGGCATACAGAAGCAAACCATATGCATCTTACCTTTGTCAATCATCTGTTTTACATGTAAGAATCCAGGA
ACTTGCAAGGAAAAACAGGGGAGGTGGTATGTGTCGAGGGAAGTAGAGTAGGTTGCCTGGGGAAGCCATGAATATGTTTTGGGTGGTGCAGACCTTGCATTAGGGCACATTTGAGCAGACTCCCAGTC
TTGTACAAGAGAATGTGCTGAAGAGGAAAGCCTGCTGGAGAGATGGATTCAGGGGCTCACTCCGTGAAAATCAGAGCTGACTTGGCAAGACTGAGGCCCCAGAGTGGGCAAGAGAGGGCGGGGGTGGG
GGTGCAGTGAGAGGAAGGAAGGTGAGTAGACTTGGATAAAGACAGAAACCCACCCTTCCCACAGGAAGCAGCCTGGGATGACAGAAGTTGTTTTTAAACAGCCATGATTGCCTTATGAGGGTCCATGG
CCCAGCTGCTGATGGGCTGCACTTTCCTGTACCAGTGTTTCAGCTATTTATTGTCTCTTACAGCCTCCATTAGCCAACAAAGGCCCAGGACTCTGCAGTACATAAACAGCAGCTC

hide sequence

RefSeq Acc Id:

XM_021723668 ⟹ XP_021579343

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	199,188,472 - 199,215,264 (-)	NCBI
SpeTri2.0	NW_004936487	18,956,364 - 18,983,796 (-)	NCBI

Sequence:

show sequence

TGGAGGGCATGGGAGTTGGCGGGGTCCTGGTGGCCGAGCGCCAGCTGGCGACCGTGATGACCTCGTTATCCTGGGACGCGCGGGGGCGCAGGGCGGCCGGCGTCGCTTACTCCTGGCCTCGCCACCCG
GAACTGAGGCGGACGGCGTGGGAGGCCCGAAGTCCGCCTCACCTCGCCGCCCGGAGGTGGCGGGGACTGCGAACGGCGCGTGCTCGATGGGGGAGCTGTTGGCCCCGTCGGTCGGATAAGTTTCGAGC
CCTGGGGAGCCGTTCGCGAGCGAGGGGACCAGGCCCGCCTGAGGGCCGCGGGTTCTGCGCGGGGAAGCCGGGTGCACCCAGGGGCCCGGGACGCTGGAGAAAGGGGCCCCCGTGCCTGGCCCGGTTGA
AGGGAGGAGGGCGGCGCGGAGGAAGAGCGGTCTTTGCCGGGCCCGGGAGGAGTCGGAGCATGGTGTGTTGTGGGAACTGAGGGACGGCGGCGTCCGACACCCAGCCCAGGAATAAAATGGAAGGAGAG
TCAAACAGATTTGAGATTCATACTCCAGTTTTTGACAAGAAGAACAAAAAGTACTTTGCATATAAGGAAAGACCCCAGAAACATGCCCATGAAAGTTTCAGAATCTCCTCTCTGGAAGGTGACCAGCT
TCAAATAACTAAGAGTAAGAAGAAAAAAGATTTCCAGCTTCTAATTTCTTCTCCTTTGAAAAAACCAGAAATCTGTGATCAGACTGAAAAGGCTACTTCTACAAACAAGAAGAAGAAAAAGAGGAGAA
AGAGTGCTCTGGGGGTAGACCCGGAAACAGGGGTTGCTTATGTCCTCGTGGATAAAGAAAACATTGAGAACACGCCCAAGAACTTGGGGAGAGACGTGGATGTCGTCTATGTAGATATCAGCAGAGAG
CAAAACTCAGCAGAAGGGTGTGTGGTGGGTGAGCACACGGCCACTGAGTCTCCTAAAGGTGGGCCAGAGGAGCCGTGGAGCGGAGCCAGGGGGAGAAAGAGTCGGAGCCAGCCGGGGGGAGTTGCAGC
ACCCCAGGGCCCTCAAGGGAGCATTGTCCTGCCCCAGCCGGAGTCACGGGCGCAGCCACCCTTGTTTTCTCTGAGCCTTGAAGGGGAAATCTCAGAACCACCAATGTCCACTGGTAAAAAGAAGTCTA
AGAAAAAAAAGAGGAAAAGGTCCAGCGTGCAGGAGTGGGAAGCCTCAGCGGAGCCTGGGGATCTAGCTCACCATCCCTCTGAAGAACCTCAGATGGCCATTGAAGCAGAGGCTGGAGAAGGCAGTGAC
ACACTAAAGAGGGTGAGAAGGTCCAGTGCTGTGAAGAAGGCCAAGAGGAGGAGACATGTCTCCGCGGAAAGCCCTGTGGAGTCTGGTGGTTCTTCAGCACTGGATGAAAACTCTGGGAACACGCGCTC
TGGTTCACTGGAGGGCGAAAGCACCATGATGGAAGAAAGGGTAACAGTCCGGTCCCTAGAGGGGAGAGCCCAGGCCGCGCAGGGGGAGAAGCAGGTGCCAGAGGCGCAGAGGTTAAACCCTGCAGTTG
AGGAAGAGCATGGCTTGGCATTGCCTGGGGATTCCACGGCAAGATGTTTATCTGAAGAGCAGAGAGAGTCTGGTGACTCAGATGTGGACTTGGATTCCGCTGTGAGGCAGCTCCAGGAGTTCATTCCT
GACATAAAGGACAGGGCTGCCACTACCATCAAGCGGATGTACCGTGACGACTTGGGACGGTTTAAAGAATTTAAAGCTCAGGGTATTGCTATTAGATTTGGCAAATTTTCTGCAAAGGAAAATAAGCA
GATAGAGAAAAATGTGCAAGAATTTCTGTCTCTGACAGGAATTGAAAATGCAGACAAGCTGCTATACACAGACAGATACCCAGAGGAGAAGTCTGCCATTACTGAATTGAAAAGAAAGCATGCGTTTA
GGGTGCACATTGGTAAGGGCATTGCTCGGCCCTGGAAACTCGTATACTATCGAGCAAAGAAGATGTTCGATGTCAATAATTACAAAGGCAGGTATAGCCAAGGAGATACGGAGAAGTTGAAGGCATAC
CATTCCCTCCACGGGAACGACTGGAAAAAGATTGGAGCCATGGTGGCCCGAAGCAGCCTCTCGGTTGCCCTGAAGTTCTCCCAGATCAGCAGTCAAAGAAATCATGGTGCTTGGAATAAGACGGAAAC
ACAGAGGCTCATCAAGGCTGTTGAAGAGGTGATTTTAAAGAAAATGTCTCCCCAGGAGATGGAAGAGATGGATTCACAGCTCCAAGAGAATCCTGAAGGTCGCCTGTCAATCGTCCGGGAAAAACTCT
ACAAGGGCATATCCTGGGTGGAAGTGGAAGCTAAAGTGGAAACCAGAAATTGGATGCAGTGCAAAAGTAAGTGGACGGAAATTCTGACCAAGAGGATGACTAATGGTGGGTTTGTGTATCGTGGAGTG
AATGCGCTGCAGGCCAAAATCAACCTTATTGAAAGGTTATATGAAATAAATGTGGAAGACGCCAATGAAATAGATTGGGAAGATCTTGCTAGTGCCATAGGCGATGTGCCTCCATCTTATGTTCAAAC
TAAGTTTTATAAGTTGAAGGCGGCCTGTGTTCCCTTTTGGCAGAGAAAGACGTTTCCAGAGATCATCGACTACCTTTACAAGACTAGTCTACCTGTGCTTAAAGAAAAGTTAAAAAAGAAGATGGCGA
GAAAAGGGACCAGAATCCAGACTCCCACAGCACCGAAGCAGGTTTTCCTATTTAGAGATATCTTTCATTCTGAAGACGATAGTGAAGGAGAAGACACAGAAGAACAAAGTTAAGCAGAGGGCTCAGGT
GCAGTTCGTTCCTGGTGCAGAAAGGCGAGAGGTGGATGTGTGGATCTTCTCTTCCTCCAACTGGTGTGTGTCACTGCTTGCACACCCCGTCTGCCTGGACTCTAGTGTCTGTGAATGGTACTCCTCAT
ATCAGCTGTCCTCTGAAAGCTGGTTACTGCGTTCATGTGGTGTCCAGCTGAACAAAAAGAGGAGCAGCAGTTTCTTCTGTCGTTGTTTGAAAGCCTGGCTCTGAGGCTTGTCGGAAGCCTCAGGACAA
CTCCTGCTGGGTTTTCAAGGGTAATTTTAGCGGCAGGCTTTTCTGTCATTCAGGAAAGCAAAACAGAGAATTTGTTGGGCTTTAGGTTACAAAGGTTGTTAAATGGAATGAAGGAGTCAGCATGGGGT
GGGGGGGCGTTGGATTATCCAGAGTTTGGGACTATACAGGTAGCTGTTGTAGCCCCTGCATGGGGCACTGATGCCTCTTTGCCTCCCAGCACCTCCATGAACCCCTGGCTGTCCACTGCTGCTGCCCT
CATGGCAGCCTGTGCACATGTCCCTTCGCCAACATGTACCTCTATAGGAACATGTGTCTCCACGCTATATAAGGGCTTCTGCCTCCTCCTGCCTTCTAGTCTCCGAGTGCCTTGTGTGGGCCGCCCCG
TAGCAGAACCCTGCAACAAGGGCATCTGGGCCACCTGTACAGGAGAAGAAAGTGGCTAAACGTGGGCTGTCAGTGCCGAGTGTGGCTCCACTGTGTCCTCAGGGCTGAGTGGTTCACACAATACTTGT
CAGGTAAGCACTGTGCCACTGAGCCACACCCCATCAGAATATGCAGAGAATTTGGGGTGTGTGTTGCTGGGGATCTAGCCCAGGGCCTGTGGATGCCAGACATGTGCTACAGCACTGTGTGCAGCACC
CCTGACTGGTTACTAGGCTACAGTGCCCTGCCTGTGCCCAGACCTGCCACCTGGGGAGACGGAAGAGGGGTGAGAGTCTTATTCACCACTGTATCCCCAGCACCTGTCACAGTGTCATGCAAAAAATG
GACACACAATAAATATAAACTAAATGAATATTGTCTTAGTGAGAATCTCTCCTGTGGTCAGCTCCTATCCCTAGACATGCCAGTCTCCATGCTGATGGGACAATAAATGCTGTATTCCTTTTGGAGGA
CAATTTGGTAAGACTCATCAGAGCCTGAAGAATGTACATGTTCTATGACCATCAATTTTTAAGAATTTGTCCTGTAATATTTGTAATAGGAAACTTGTTAAATTATGGTATATCCCTAGAATATTGCA
CAGTGTTTAGAAATGATAATAACAGGTTTGATTGATGTGAAATATTTCAGAAGAGTATATATATATATATATTTTCTCAATTTTGTAAAAGTAAAAAAATTAAGGAAATTGTGTATGTAGAAGCATTA
AAGTGAATGAAATGAACCCAAGATGTTGATGTCAACACTGGTTCTCTCTGGGCAGCGGGATTGTGAGTTTGTAACACAGAACTCTTTGACGTGCTGGGGTTTGAGCCCAGGTCCTGGGACGTGCCTGA
CAAGTGCTCTCCCTGATTCACAGGCACAGTCCTAGTCTAGAACTCTTGACTGCATCTGCAGCAAGACAGACTCACACAGCCCTCTGTGTCTTGGACTCAGCATTAGTTCAGCTCCTCTGGTCTCCAGA
GATGTGGTTCCCAGCTGATTCTCCACTGTCCCTCTGCAAAGTCTGTTTTATCTGAGTCCACACATACAGTCCCTCAGCCCCCAAGACAGGCTCTCATAGCCTCACTTCAGTCTTCCCTCCGTCAACCC
AGAAGAGAAAAGAGATTGTCTTCCTCTTCCTGCTGAGGCCCTGGTGTTGTTCCGTGACCCACAGAGCACATGCCCGGCTGAGTGCTCACTGTAACCTGGAAGATGGGACTGGCTCCAGCCCGTGGGCC
CAACTCAAGCTGCGATCTAGCTGAGTTGGTAAATCCCCCAGTGGAATGTCTCATGGGTTCTGTGAGCAGACAAACGGGTGAATGGACTTTGAGGAAGCGACCCACAACTGTGTGTGTGACAGTGGGTG
ATTACTTGAACTATAAATTTTACCCAGTGACTGTGTACTTTGTAAGTTTTACTTTGTAGTTTTTTTCTCACTTATCTCCCTGCCTCTAACCCTCAAAATGGGCATACAGAAGCAAACCATATGCATCT
TACCTTTGTCAATCATCTGTTTTACATGTAAGAATCCAGGAACTTGCAAGGAAAAACAGGGGAGGTGGTATGTGTCGAGGGAAGTAGAGTAGGTTGCCTGGGGAAGCCATGAATATGTTTTGGGTGGT
GCAGACCTTGCATTAGGGCACATTTGAGCAGACTCCCAGTCTTGTACAAGAGAATGTGCTGAAGAGGAAAGCCTGCTGGAGAGATGGATTCAGGGGCTCACTCCGTGAAAATCAGAGCTGACTTGGCA
AGACTGAGGCCCCAGAGTGGGCAAGAGAGGGCGGGGGTGGGGGTGCAGTGAGAGGAAGGAAGGTGAGTAGACTTGGATAAAGACAGAAACCCACCCTTCCCACAGGAAGCAGCCTGGGATGACAGAAG
TTGTTTTTAAACAGCCATGATTGCCTTATGAGGGTCCATGGCCCAGCTGCTGATGGGCTGCACTTTCCTGTACCAGTGTTTCAGCTATTTATTGTCTCTTACAGCCTCCATTAGCCAACAAAGGCCCA
GGACTCTGCAGTACATAAACAGCAGCTC

hide sequence

RefSeq Acc Id:

XM_040286532 ⟹ XP_040142466

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	199,188,472 - 199,215,264 (-)	NCBI

RefSeq Acc Id:

XR_005734178

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	199,197,851 - 199,215,265 (-)	NCBI


Protein RefSeqs	XP_005321161	(Get FASTA)	NCBI Sequence Viewer
	XP_021579342	(Get FASTA)	NCBI Sequence Viewer
	XP_021579343	(Get FASTA)	NCBI Sequence Viewer
	XP_040142466	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000007120.3
	ENSSTOP00000025560.1
GenBank Protein	KAG3288232	(Get FASTA)	NCBI Sequence Viewer
	KAG3288233	(Get FASTA)	NCBI Sequence Viewer
	KAG3288234	(Get FASTA)	NCBI Sequence Viewer
	KAG3288235	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005321161 ⟸ XM_005321104
- Peptide Label:	isoform X1
- UniProtKB:	I3MAQ9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEGESNRFEIHTPVFDKKNKKYFAYKERPQKHAHESFRISSLEGDQLQITKSKKKKDFQLLISSPLKKPEICDQTEKATSTNKKKKKRRKSALGVDPETGVAYVLVDKENIENTPKNLGRDVDVVYVD ISREQNSAEGCVVGEHTATESPKGGPEEPWSGARGRKSRSQPGGVAAPQGPQGSIVLPQPESRAQPPLFSLSLEGEISEPPMSTGKKKSKKKKRKRSSVQEWEASAEPGDLAHHPSEEPQMAIEAEAG EGSDTLKRVRRSSAVKKAKRRRHVSAESPVESGGSSALDENSGNTRSGSLEGESTMMEERVTVRSLEGRAQAAQGEKQVPEAQRLNPAVEEEHGLALPGDSTARCLSEEQRESGDSDVDLDSAVRQLQ EFIPDIKDRAATTIKRMYRDDLGRFKEFKAQGIAIRFGKFSAKENKQIEKNVQEFLSLTGIENADKLLYTDRYPEEKSAITELKRKHAFRVHIGKGIARPWKLVYYRAKKMFDVNNYKGRYSQGDTEK LKAYHSLHGNDWKKIGAMVARSSLSVALKFSQISSQRNHGAWNKTETQRLIKAVEEVILKKMSPQEMEEMDSQLQENPEGRLSIVREKLYKGISWVEVEAKVETRNWMQCKSKWTEILTKRMTNGGFV YRGVNALQAKINLIERLYEINVEDANEIDWEDLASAIGDVPPSYVQTKFYKLKAACVPFWQRKTFPEIIDYLYKTSLPVLKEKLKKKMARKGTRIQTPTAPKQVFLFRDIFHSEDDSEGEDTEEQS hide sequence

RefSeq Acc Id:	XP_021579343 ⟸ XM_021723668
- Peptide Label:	isoform X1
- UniProtKB:	I3MAQ9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEGESNRFEIHTPVFDKKNKKYFAYKERPQKHAHESFRISSLEGDQLQITKSKKKKDFQLLISSPLKKPEICDQTEKATSTNKKKKKRRKSALGVDPETGVAYVLVDKENIENTPKNLGRDVDVVYVD ISREQNSAEGCVVGEHTATESPKGGPEEPWSGARGRKSRSQPGGVAAPQGPQGSIVLPQPESRAQPPLFSLSLEGEISEPPMSTGKKKSKKKKRKRSSVQEWEASAEPGDLAHHPSEEPQMAIEAEAG EGSDTLKRVRRSSAVKKAKRRRHVSAESPVESGGSSALDENSGNTRSGSLEGESTMMEERVTVRSLEGRAQAAQGEKQVPEAQRLNPAVEEEHGLALPGDSTARCLSEEQRESGDSDVDLDSAVRQLQ EFIPDIKDRAATTIKRMYRDDLGRFKEFKAQGIAIRFGKFSAKENKQIEKNVQEFLSLTGIENADKLLYTDRYPEEKSAITELKRKHAFRVHIGKGIARPWKLVYYRAKKMFDVNNYKGRYSQGDTEK LKAYHSLHGNDWKKIGAMVARSSLSVALKFSQISSQRNHGAWNKTETQRLIKAVEEVILKKMSPQEMEEMDSQLQENPEGRLSIVREKLYKGISWVEVEAKVETRNWMQCKSKWTEILTKRMTNGGFV YRGVNALQAKINLIERLYEINVEDANEIDWEDLASAIGDVPPSYVQTKFYKLKAACVPFWQRKTFPEIIDYLYKTSLPVLKEKLKKKMARKGTRIQTPTAPKQVFLFRDIFHSEDDSEGEDTEEQS hide sequence

RefSeq Acc Id:	XP_021579342 ⟸ XM_021723667
- Peptide Label:	isoform X1
- UniProtKB:	I3MAQ9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEGESNRFEIHTPVFDKKNKKYFAYKERPQKHAHESFRISSLEGDQLQITKSKKKKDFQLLISSPLKKPEICDQTEKATSTNKKKKKRRKSALGVDPETGVAYVLVDKENIENTPKNLGRDVDVVYVD ISREQNSAEGCVVGEHTATESPKGGPEEPWSGARGRKSRSQPGGVAAPQGPQGSIVLPQPESRAQPPLFSLSLEGEISEPPMSTGKKKSKKKKRKRSSVQEWEASAEPGDLAHHPSEEPQMAIEAEAG EGSDTLKRVRRSSAVKKAKRRRHVSAESPVESGGSSALDENSGNTRSGSLEGESTMMEERVTVRSLEGRAQAAQGEKQVPEAQRLNPAVEEEHGLALPGDSTARCLSEEQRESGDSDVDLDSAVRQLQ EFIPDIKDRAATTIKRMYRDDLGRFKEFKAQGIAIRFGKFSAKENKQIEKNVQEFLSLTGIENADKLLYTDRYPEEKSAITELKRKHAFRVHIGKGIARPWKLVYYRAKKMFDVNNYKGRYSQGDTEK LKAYHSLHGNDWKKIGAMVARSSLSVALKFSQISSQRNHGAWNKTETQRLIKAVEEVILKKMSPQEMEEMDSQLQENPEGRLSIVREKLYKGISWVEVEAKVETRNWMQCKSKWTEILTKRMTNGGFV YRGVNALQAKINLIERLYEINVEDANEIDWEDLASAIGDVPPSYVQTKFYKLKAACVPFWQRKTFPEIIDYLYKTSLPVLKEKLKKKMARKGTRIQTPTAPKQVFLFRDIFHSEDDSEGEDTEEQS hide sequence

RefSeq Acc Id:	XP_040142466 ⟸ XM_040286532
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSSTOP00000007120 ⟸ ENSSTOT00000007956

Protein Domains

Myb-like

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000007957	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000007956.3	UniProtKB/TrEMBL
	ENSSTOT00000030379.1	UniProtKB/TrEMBL
Gene3D-CATH	Homeodomain-like	UniProtKB/TrEMBL
InterPro	SANT/Myb	UniProtKB/TrEMBL
	TTF1-like	UniProtKB/TrEMBL
NCBI Gene	Ttf1	ENTREZGENE
PANTHER	TRANSCRIPTION TERMINATION FACTOR 1	UniProtKB/TrEMBL
	TRANSCRIPTION TERMINATION FACTOR 1	UniProtKB/TrEMBL
Pfam	Myb_DNA-bind_6	UniProtKB/TrEMBL
PROSITE	MYB_LIKE	UniProtKB/TrEMBL
SMART	SANT	UniProtKB/TrEMBL
UniProt	I3MAQ9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations