Arhgap35 (Rho GTPase activating protein 35) - Rat Genome Database

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Gene: Arhgap35 (Rho GTPase activating protein 35) Ictidomys tridecemlineatus
Analyze
Symbol: Arhgap35
Name: Rho GTPase activating protein 35
RGD ID: 12636039
Description: ENCODES a protein that exhibits GTPase activating protein binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN positive regulation of GTPase activity (ortholog); positive regulation of neuron projection development (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; platelet-derived growth factor signaling pathway; ASSOCIATED WITH Anophthalmia (ortholog); lung adenocarcinoma (ortholog); Martsolf syndrome 1 (ortholog); FOUND IN actin cytoskeleton (inferred); cell projection (inferred); ciliary basal body (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: rho GTPase-activating protein 35
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934919,095,903 - 19,170,964 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936664713,984 - 789,344 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936664714,036 - 788,584 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Arhgap35SquirrelAnophthalmia  ISOARHGAP35 (Homo sapiens)8554872ClinVar Annotator: match by term: AnophthalmiaClinVarPMID:25741868 and PMID:36450800
Arhgap35SquirrelMartsolf syndrome 1  ISOARHGAP35 (Homo sapiens)8554872ClinVar Annotator: match by term: Martsolf syndrome 1ClinVarPMID:25741868
Arhgap35Squirrelmicrophthalmia  ISOARHGAP35 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:25741868 and PMID:36450800
Arhgap35SquirrelNeurodevelopmental Disorders  ISOARHGAP35 (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868 and PMID:33057194
Arhgap35SquirrelPeters anomaly  ISOARHGAP35 (Homo sapiens)8554872ClinVar Annotator: match by term: Irido-corneo-trabecular dysgenesisClinVarPMID:25741868 and PMID:36450800
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Arhgap35Squirrellung adenocarcinoma  ISOARHGAP35 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:27158780


Biological Process
1 to 20 of 26 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Arhgap35Squirrelaxon guidance involved_inIEAUniProtKB:Q91YM2 and ensembl:ENSMUSP00000075242150520179 EnsemblGO_REF:0000107
Arhgap35Squirrelaxonal fasciculation involved_inIEAUniProtKB:Q91YM2 and ensembl:ENSMUSP00000075242150520179 EnsemblGO_REF:0000107
Arhgap35Squirrelcamera-type eye development acts_upstream_of_or_withinIEAUniProtKB:Q91YM2 and ensembl:ENSMUSP00000075242150520179 EnsemblGO_REF:0000107
Arhgap35Squirrelcell migration involved_inIEAUniProtKB:Q91YM2 and ensembl:ENSMUSP00000075242150520179 EnsemblGO_REF:0000107
Arhgap35Squirrelcentral nervous system neuron axonogenesis involved_inIEAUniProtKB:Q91YM2 and ensembl:ENSMUSP00000075242150520179 EnsemblGO_REF:0000107
Arhgap35Squirrelestablishment or maintenance of actin cytoskeleton polarity involved_inIEAUniProtKB:Q91YM2 and ensembl:ENSMUSP00000075242150520179 EnsemblGO_REF:0000107
Arhgap35Squirrelforebrain development acts_upstream_of_or_withinIEAUniProtKB:Q91YM2 and ensembl:ENSMUSP00000075242150520179 EnsemblGO_REF:0000107
Arhgap35Squirrelmammary gland development involved_inIEAUniProtKB:Q91YM2 and ensembl:ENSMUSP00000075242150520179 EnsemblGO_REF:0000107
Arhgap35Squirrelnegative regulation of Rho protein signal transduction acts_upstream_of_or_withinIEAUniProtKB:Q91YM2 and ensembl:ENSMUSP00000075242150520179 EnsemblGO_REF:0000107
Arhgap35Squirrelnegative regulation of vascular permeability acts_upstream_of_or_withinIEAUniProtKB:Q91YM2 and ensembl:ENSMUSP00000075242150520179 EnsemblGO_REF:0000107
Arhgap35Squirrelneural tube closure acts_upstream_of_or_withinIEAUniProtKB:Q91YM2 and ensembl:ENSMUSP00000075242150520179 EnsemblGO_REF:0000107
Arhgap35Squirrelneuron projection guidance involved_inIEAUniProtKB:Q91YM2 and ensembl:ENSMUSP00000075242150520179 EnsemblGO_REF:0000107
Arhgap35Squirrelpositive regulation of cilium assembly involved_inIEAUniProtKB:Q91YM2 and ensembl:ENSMUSP00000075242150520179 EnsemblGO_REF:0000107
Arhgap35Squirrelpositive regulation of GTPase activity involved_inISOArhgap35 (Rattus norvegicus)9068941PMID:9852136UniProtPMID:9852136 and REF_RGD_ID:11535110
Arhgap35Squirrelpositive regulation of neuron projection development acts_upstream_of_or_withinISOMGI:878609068941 PMID:15084284MGIPMID:15084284
Arhgap35Squirrelpositive regulation of neuron projection development involved_inIEAUniProtKB:Q91YM2 and ensembl:ENSMUSP00000075242150520179 EnsemblGO_REF:0000107
Arhgap35Squirrelregulation of actin cytoskeleton organization involved_inIEAUniProtKB:Q91YM2 and ensembl:ENSMUSP00000075242150520179 EnsemblGO_REF:0000107
Arhgap35Squirrelregulation of actin polymerization or depolymerization involved_inIEAUniProtKB:Q91YM2 and ensembl:ENSMUSP00000075242150520179 EnsemblGO_REF:0000107
Arhgap35Squirrelregulation of axonogenesis involved_inIEAPANTHER:PTN000571609150520179 TreeGrafterGO_REF:0000118
Arhgap35Squirrelregulation of axonogenesis involved_inIEAUniProtKB:Q91YM2 and ensembl:ENSMUSP00000075242150520179 EnsemblGO_REF:0000107
1 to 20 of 26 rows

Cellular Component
1 to 9 of 9 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Arhgap35Squirrelactin cytoskeleton located_inIEAUniProtKB:Q91YM2 and ensembl:ENSMUSP00000075242150520179 EnsemblGO_REF:0000107
Arhgap35Squirrelcell projection located_inIEAUniProtKB-KW:KW-0966150520179 UniProtGO_REF:0000043
Arhgap35Squirrelciliary basal body located_inIEAUniProtKB:Q91YM2 and ensembl:ENSMUSP00000075242150520179 EnsemblGO_REF:0000107
Arhgap35Squirrelcytoplasm located_inIEAUniProtKB:Q91YM2 and ensembl:ENSMUSP00000075242150520179 EnsemblGO_REF:0000107
Arhgap35Squirrelcytoskeleton located_inIEAUniProtKB-KW:KW-0206150520179 UniProtGO_REF:0000043
Arhgap35Squirrelcytosol located_inIEAPANTHER:PTN000571609150520179 TreeGrafterGO_REF:0000118
Arhgap35Squirrelnucleus located_inIEAUniProtKB-SubCell:SL-0191150520179 UniProtGO_REF:0000044
Arhgap35Squirrelplasma membrane located_inIEAUniProtKB-SubCell:SL-0039150520179 UniProtGO_REF:0000044
Arhgap35Squirrelplasma membrane located_inIEAUniProtKB-KW:KW-1003150520179 UniProtGO_REF:0000043
1 to 9 of 9 rows

Molecular Function
1 to 10 of 10 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Arhgap35SquirrelGTP binding enablesIEAInterPro:IPR001806150520179 InterProGO_REF:0000002
Arhgap35SquirrelGTP binding enablesIEAUniProtKB-KW:KW-0342150520179 UniProtGO_REF:0000043
Arhgap35SquirrelGTPase activating protein binding  ISORasa1 (Rattus norvegicus)9068941 RGDPMID:2005883 and REF_RGD_ID:10002731
Arhgap35SquirrelGTPase activator activity enablesIEAPANTHER:PTN000571609150520179 TreeGrafterGO_REF:0000118
Arhgap35SquirrelGTPase activator activity enablesIEAUniProtKB-KW:KW-0343150520179 UniProtGO_REF:0000043
Arhgap35SquirrelGTPase activator activity enablesIEAUniProtKB:Q91YM2 more ...150520179 EnsemblGO_REF:0000107
Arhgap35SquirrelGTPase activity enablesIEAInterPro:IPR001806150520179 InterProGO_REF:0000002
Arhgap35Squirrellipid binding enablesIEAUniProtKB-KW:KW-0446150520179 UniProtGO_REF:0000043
Arhgap35Squirrelphospholipid binding enablesIEAUniProtKB:Q9NRY4 and ensembl:ENSP00000500409150520179 EnsemblGO_REF:0000107
Arhgap35Squirrelprotein-containing complex binding  ISOArhgap35 (Rattus norvegicus)9068941 RGDPMID:2005883 and REF_RGD_ID:10002731
1 to 10 of 10 rows

Imported Annotations - PID (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Arhgap35Squirrelephrin - ephrin receptor bidirectional signaling axis  ISOARHGAP35 (Homo sapiens)9068941 PIDPID:200216
Arhgap35Squirrelplatelet-derived growth factor signaling pathway  ISOARHGAP35 (Homo sapiens)9068941 PIDPID:200149
PMID:22301074  



Arhgap35
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934919,095,903 - 19,170,964 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936664713,984 - 789,344 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936664714,036 - 788,584 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARHGAP35
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381946,860,997 - 47,005,077 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1946,860,997 - 47,005,077 (+)EnsemblGRCh38hg38GRCh38
GRCh371947,364,254 - 47,508,334 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361952,113,773 - 52,200,174 (+)NCBINCBI36Build 36hg18NCBI36
Celera1944,226,291 - 44,312,689 (+)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1943,846,727 - 43,932,756 (+)NCBIHuRef
CHM1_11947,423,799 - 47,510,216 (+)NCBICHM1_1
T2T-CHM13v2.01949,686,835 - 49,830,977 (+)NCBIT2T-CHM13v2.0
Arhgap35
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39716,228,398 - 16,349,313 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl716,227,644 - 16,348,918 (-)EnsemblGRCm39 Ensembl
GRCm38716,494,473 - 16,614,993 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl716,493,719 - 16,614,993 (-)EnsemblGRCm38mm10GRCm38
MGSCv37717,079,822 - 17,200,342 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36715,653,561 - 15,773,515 (-)NCBIMGSCv36mm8
Celera713,691,036 - 13,812,194 (-)NCBICelera
Cytogenetic Map7A2NCBI
cM Map79.15NCBI
Arhgap35
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8186,330,566 - 86,447,414 (-)NCBIGRCr8
mRatBN7.2177,202,436 - 77,319,298 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl177,202,436 - 77,319,298 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx182,576,527 - 82,693,394 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0191,140,568 - 91,257,426 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0184,331,623 - 84,448,478 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0178,456,409 - 78,573,374 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl178,456,409 - 78,573,374 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0179,703,650 - 79,820,568 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4176,757,031 - 76,824,155 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11628,093,164 - 28,259,729 (+)NCBI
Celera171,687,713 - 71,804,603 (-)NCBICelera
Cytogenetic Map1q21NCBI
Arhgap35
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955574915,325 - 984,744 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955574915,604 - 984,744 (+)NCBIChiLan1.0ChiLan1.0
ARHGAP35
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22053,006,784 - 53,151,982 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11954,878,676 - 55,023,271 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01943,850,692 - 43,994,487 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11952,435,379 - 52,521,104 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1952,435,379 - 52,521,104 (+)Ensemblpanpan1.1panPan2
ARHGAP35
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11108,952,836 - 109,034,329 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1108,952,562 - 109,034,337 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1108,432,475 - 108,561,300 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01109,473,916 - 109,607,035 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1109,476,089 - 109,607,038 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11109,144,987 - 109,284,705 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01108,789,454 - 108,918,490 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01109,657,989 - 109,786,942 (-)NCBIUU_Cfam_GSD_1.0
ARHGAP35
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl652,711,901 - 52,841,288 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1652,711,463 - 52,841,295 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2648,200,461 - 48,215,323 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARHGAP35
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1640,264,466 - 40,353,157 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl640,205,892 - 40,353,280 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607319,911,593 - 20,059,133 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arhgap35
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248326,650,383 - 6,719,786 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248326,650,383 - 6,773,828 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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RefSeq Transcripts XM_005336571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000011410   ⟹   ENSSTOP00000010240
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936664713,984 - 789,344 (+)Ensembl
RefSeq Acc Id: XM_005336571   ⟹   XP_005336628
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934919,095,903 - 19,170,964 (+)NCBI
SpeTri2.0NW_004936664714,036 - 788,584 (+)NCBI
Sequence:
Protein RefSeqs XP_005336628 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000010240.3
GenBank Protein KAG3256319 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005336628   ⟸   XM_005336571
- UniProtKB: I3MHA2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000010240   ⟸   ENSSTOT00000011410
FF   pG1 pseudoGTPase   pG2 pseudoGTPase   Rho-GAP



1 to 33 of 33 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSTOG00000011409 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000011410.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.440 UniProtKB/TrEMBL
  1.10.555.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro FF_domain UniProtKB/TrEMBL
  FF_domain_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  pG1 UniProtKB/TrEMBL
  Rho-GAP_domain UniProtKB/TrEMBL
  Rho_GTPase_activation_prot UniProtKB/TrEMBL
  RhoGAP-FF1 UniProtKB/TrEMBL
  RhoGAP_dom UniProtKB/TrEMBL
  RhoGAP_pG1_pG2 UniProtKB/TrEMBL
  RhoGAP_pG2 UniProtKB/TrEMBL
  Small_GTPase UniProtKB/TrEMBL
NCBI Gene Arhgap35 ENTREZGENE
PANTHER RHO GTPASE-ACTIVATING PROTEIN 190 UniProtKB/TrEMBL
  RHO GTPASE-ACTIVATING PROTEIN 35 UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
  RhoGAP UniProtKB/TrEMBL
  RhoGAP-FF1 UniProtKB/TrEMBL
  RhoGAP_pG1_pG2 UniProtKB/TrEMBL
PROSITE PG1 UniProtKB/TrEMBL
  PG2 UniProtKB/TrEMBL
  PS51676 UniProtKB/TrEMBL
  RHOGAP UniProtKB/TrEMBL
SMART RhoGAP UniProtKB/TrEMBL
  SM00441 UniProtKB/TrEMBL
Superfamily-SCOP SSF48350 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
  SSF81698 UniProtKB/TrEMBL
UniProt I3MHA2 ENTREZGENE, UniProtKB/TrEMBL
1 to 33 of 33 rows