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Gene: Lman1 (lectin, mannose binding 1) Ictidomys tridecemlineatus

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Symbol:

Lman1

Name:

lectin, mannose binding 1

RGD ID:

12632260

Description:

ENCODES a protein that exhibits identical protein binding (ortholog); metal ion binding (ortholog); INVOLVED IN early endosome to Golgi transport (ortholog); gene expression (ortholog); in utero embryonic development (ortholog); PARTICIPATES IN protein secretory pathway; ASSOCIATED WITH basal cell carcinoma (ortholog); factor V deficiency (ortholog); factor XIII deficiency (ortholog); FOUND IN endoplasmic reticulum-Golgi intermediate compartment (ortholog); glutamatergic synapse (ortholog); postsynaptic Golgi apparatus (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404944	30,144,591 - 30,169,193 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936497	5,383,524 - 5,408,452 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936497	5,383,636 - 5,409,347 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lman1	Squirrel	factor XIII deficiency		ISO	LMAN1 (Homo sapiens)	9068941	F5F8D and OMIM:227300	RGD	PMID:9546392 and REF_RGD_ID:1600100

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lman1	Squirrel	factor V deficiency		ISO	LMAN1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Factor V deficiency	ClinVar	PMID:25741868
Lman1	Squirrel	Familial Multiple Coagulation Factor Deficiency I		ISO	LMAN1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: FMFD I	ClinVar	PMID:18391077 more ...
Lman1	Squirrel	genetic disease		ISO	LMAN1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar
Lman1	Squirrel	immunodeficiency 12		ISO	LMAN1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Combined immunodeficiency due to MALT1 deficiency	ClinVar	PMID:28492532
Lman1	Squirrel	isolated microphthalmia 3		ISO	LMAN1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Isolated microphthalmia 3	ClinVar	PMID:14662654 more ...

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lman1	Squirrel	basal cell carcinoma		ISO	LMAN1 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:36428691

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lman1	Squirrel	Familial Multiple Coagulation Factor Deficiency I		ISO	LMAN1 (Homo sapiens)	7240710		OMIM

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lman1	Squirrel	early endosome to Golgi transport	NOT\|involved_in	ISO	LMAN1 (Homo sapiens)	9068941	PMID:18287528	UniProt	PMID:18287528
Lman1	Squirrel	endoplasmic reticulum organization	acts_upstream_of_or_within	IEA	UniProtKB:Q9D0F3 and ensembl:ENSMUSP00000158495	150520179		Ensembl	GO_REF:0000107
Lman1	Squirrel	endoplasmic reticulum to Golgi vesicle-mediated transport	involved_in	IEA	PANTHER:PTN007564058	150520179		TreeGrafter	GO_REF:0000118
Lman1	Squirrel	gene expression	acts_upstream_of_or_within	ISO	MGI:2183439	9068941	PMID:29735583	MGI	PMID:29735583
Lman1	Squirrel	gene expression	acts_upstream_of_or_within	ISO	Lman1 (Mus musculus)	9068941	PMID:29735583	MGI	PMID:29735583
Lman1	Squirrel	Golgi organization	involved_in	IEA	UniProtKB:P49257 and ensembl:ENSP00000251047	150520179		Ensembl	GO_REF:0000107
Lman1	Squirrel	in utero embryonic development	acts_upstream_of_or_within	ISO	Lman1 (Mus musculus)	9068941	PMID:29735583	MGI	PMID:29735583
Lman1	Squirrel	negative regulation of protein targeting to mitochondrion	involved_in	ISO	LMAN1 (Homo sapiens)	9068941	PMID:24270810	ParkinsonsUK-UCL	PMID:24270810
Lman1	Squirrel	protein exit from endoplasmic reticulum	NOT\|involved_in	ISO	LMAN1 (Homo sapiens)	9068941	PMID:18287528	UniProt	PMID:18287528

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lman1	Squirrel	COPII-coated ER to Golgi transport vesicle	located_in	IEA	UniProtKB:Q9D0F3 and ensembl:ENSMUSP00000158495	150520179		Ensembl	GO_REF:0000107
Lman1	Squirrel	COPII-coated ER to Golgi transport vesicle	located_in	IEA	PANTHER:PTN007564058	150520179		TreeGrafter	GO_REF:0000118
Lman1	Squirrel	endoplasmic reticulum	located_in	IEA	UniProtKB:P49257 and ensembl:ENSP00000251047	150520179		Ensembl	GO_REF:0000107
Lman1	Squirrel	endoplasmic reticulum membrane	located_in	IEA	PANTHER:PTN007564058	150520179		TreeGrafter	GO_REF:0000118
Lman1	Squirrel	endoplasmic reticulum-Golgi intermediate compartment		ISO	Lman1 (Rattus norvegicus)	9068941		RGD	PMID:16257008 and REF_RGD_ID:1600099
Lman1	Squirrel	endoplasmic reticulum-Golgi intermediate compartment	located_in	IEA	PANTHER:PTN007564058	150520179		TreeGrafter	GO_REF:0000118
Lman1	Squirrel	endoplasmic reticulum-Golgi intermediate compartment	located_in	IEA	UniProtKB:P49257 more ...	150520179		Ensembl	GO_REF:0000107
Lman1	Squirrel	glutamatergic synapse	is_active_in	ISO	Lman1 (Rattus norvegicus)	9068941	PMID:33239744	SynGO	PMID:33239744 and REF_RGD_ID:405650380
Lman1	Squirrel	Golgi apparatus	located_in	IEA	UniProtKB:Q9D0F3 and ensembl:ENSMUSP00000158495	150520179		Ensembl	GO_REF:0000107
Lman1	Squirrel	Golgi membrane	located_in	IEA	PANTHER:PTN007564058	150520179		TreeGrafter	GO_REF:0000118
Lman1	Squirrel	membrane	located_in	IEA	InterPro:IPR005052	150520179		InterPro	GO_REF:0000002
Lman1	Squirrel	membrane	located_in	IEA	UniProtKB-SubCell:SL-0162	150520179		UniProt	GO_REF:0000044
Lman1	Squirrel	membrane	located_in	IEA	UniProtKB-KW:KW-0472	150520179		UniProt	GO_REF:0000043
Lman1	Squirrel	postsynaptic Golgi apparatus	is_active_in	ISO	Lman1 (Rattus norvegicus)	9068941	PMID:33239744	SynGO	PMID:33239744 and REF_RGD_ID:405650380
Lman1	Squirrel	sarcomere	located_in	IEA	UniProtKB:Q9D0F3 and ensembl:ENSMUSP00000158495	150520179		Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lman1	Squirrel	D-mannose binding	enables	IEA	PANTHER:PTN007564058	150520179		TreeGrafter	GO_REF:0000118
Lman1	Squirrel	identical protein binding		ISO	Lman1 (Rattus norvegicus)	9068941		RGD	PMID:16257008 and REF_RGD_ID:1600099
Lman1	Squirrel	metal ion binding	enables	ISO	LMAN1 (Homo sapiens)	9068941	PMID:24498414	DisProt	PMID:24498414
Lman1	Squirrel	protein binding	enables	ISO	UniProtKB:Q12893	9068941	PMID:24806965	UniProt	PMID:24806965
Lman1	Squirrel	protein binding	enables	ISO	UniProtKB:Q15042 more ...	9068941	PMID:22337587	UniProt	PMID:22337587
Lman1	Squirrel	protein binding	enables	ISO	UniProtKB:Q9BS26	9068941	PMID:17805346	IntAct	PMID:17805346
Lman1	Squirrel	protein binding	enables	ISO	UniProtKB:P01009	9068941	PMID:31142615	UniProt	PMID:31142615
Lman1	Squirrel	protein binding	enables	ISO	UniProtKB:O75612	9068941	PMID:9774442	UniProt	PMID:9774442
Lman1	Squirrel	protein binding	enables	ISO	UniProtKB:O15260	9068941	PMID:18287528	IntAct	PMID:18287528
Lman1	Squirrel	protein binding	enables	ISO	UniProtKB:Q8NI22	9068941	PMID:16304051 more ...	IntAct	PMID:16304051 more ...
Lman1	Squirrel	protein binding	enables	ISO	UniProtKB:O15155	9068941	PMID:34779586	UniProt	PMID:34779586

RGD Manual Annotations

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lman1	Squirrel	protein secretory pathway		ISO	Lman1 (Rattus norvegicus)	9068941		RGD	PMID:12517452 and REF_RGD_ID:1549454

PMID:30032202

Lman1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404944	30,144,591 - 30,169,193 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936497	5,383,524 - 5,408,452 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936497	5,383,636 - 5,409,347 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LMAN1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	18	59,327,823 - 59,359,265 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	18	59,327,823 - 59,359,265 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	18	56,995,055 - 57,026,497 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	18	55,148,088 - 55,177,463 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	18	55,148,087 - 55,177,461	NCBI
Celera	18	53,712,874 - 53,744,326 (-)	NCBI		Celera
Cytogenetic Map	18	q21.32	NCBI
HuRef	18	53,704,319 - 53,735,757 (-)	NCBI		HuRef
CHM1_1	18	56,990,302 - 57,021,756 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	18	59,529,314 - 59,560,731 (-)	NCBI		T2T-CHM13v2.0

Lman1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	66,113,810 - 66,135,706 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	66,113,809 - 66,155,651 (-)	Ensembl		GRCm39 Ensembl
GRCm38	18	65,980,739 - 66,002,635 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	65,980,738 - 66,022,580 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	66,140,393 - 66,162,289 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	66,106,123 - 66,127,980 (-)	NCBI		MGSCv36	mm8
Celera	18	67,256,677 - 67,278,706 (-)	NCBI		Celera
Cytogenetic Map	18	E1	NCBI
cM Map	18	39.08	NCBI

Lman1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	61,778,971 - 61,800,960 (-)	NCBI		GRCr8
mRatBN7.2	18	59,508,996 - 59,530,873 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	59,508,996 - 59,530,851 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	61,604,527 - 61,624,705 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	62,303,213 - 62,323,391 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	60,131,092 - 60,151,186 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	61,683,377 - 61,707,344 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	61,685,117 - 61,707,317 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	60,880,943 - 60,901,877 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	62,504,296 - 62,524,151 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	62,577,496 - 62,597,352 (+)	NCBI
Celera	18	57,631,372 - 57,651,369 (-)	NCBI		Celera
Cytogenetic Map	18	q12.1	NCBI

Lman1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955402	43,464,722 - 43,496,048 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955402	43,465,556 - 43,495,789 (-)	NCBI	ChiLan1.0	ChiLan1.0

LMAN1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	17	76,873,237 - 76,904,670 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	18	62,565,851 - 62,597,200 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	18	52,722,735 - 52,754,013 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	18	56,049,292 - 56,080,531 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	18	56,049,292 - 56,080,533 (-)	Ensembl	panpan1.1		panPan2

LMAN1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	16,869,106 - 16,897,911 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	16,869,121 - 16,894,786 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	17,844,723 - 17,873,524 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	16,746,349 - 16,775,132 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	16,746,354 - 16,773,529 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	16,781,955 - 16,810,766 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	16,702,460 - 16,731,329 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	16,964,186 - 16,993,012 (+)	NCBI		UU_Cfam_GSD_1.0

LMAN1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	161,607,143 - 161,631,651 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	161,607,122 - 161,631,650 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	179,184,985 - 179,209,552 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LMAN1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	18	20,377,259 - 20,409,565 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	18	20,377,255 - 20,409,741 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666060	5,179,049 - 5,212,921 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lman1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624792	4,732,446 - 4,776,041 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624792	4,732,476 - 4,775,946 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005323019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013357604	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000013135 ⟹ ENSSTOP00000011774

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936497	5,383,524 - 5,408,452 (+)	Ensembl

RefSeq Acc Id:

XM_005323019 ⟹ XP_005323076

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404944	30,144,591 - 30,168,228 (+)	NCBI
SpeTri2.0	NW_004936497	5,383,636 - 5,404,922 (+)	NCBI

Sequence:

show sequence

GCCGGCCTCTGCGTCCCAGAATCCAAGATGGCGGGATCCAGGCTAAGGGGTCCCCAGGCCAGAGCCTTGCCGCTTCTCTGCGCCCTGCTGCTGTCACTCAGTCGCTTCGTCCGGGGCGACGGCATGGG
AGGCGACCCCGCGGCCGCCGGTGCTGCGGACACGCCGGCTGTGATGCCACATCGCCGTTTCGAGTACAAATACAGCTTCAAGGGGCCGCACCTGGTGCAGAGCGATGGGACCGTGCCCTTCTGGGCCC
ACGCGGGGAATGCTATTGCAAGTTCAGATCAAATTCGAATAGCACCATCTTTAAAAAGCCAAAGAGGGTCAGTGTGGACAAAGACAAAAGCAGCCTTTGAGAACTGGGAATTGGAGGTGACATTTCGA
GTGACTGGAAGAGGTCGAATTGGAGCCGATGGCCTAGCAGTTTGGTATACAGAAAATCAAGGCTTGGAGGGCCCTGTGTTTGGATCAGCTGATATGTGGAATGGCGTTGGAATATTTTTTGATTCTTT
TGACAATGATGGAAAGAAAAATAATCCTGCTATAGTTATTGTAGGCAACAATGGACAAATCCATTATGACCATCAAAATGATGGTGCCACGCAAGCCCTAGCAAGTTGTCTGAGGGACTTTCGCAATA
AACCCTATCCTGTTCGGGCGAAGATTGTATATTACCAGAAAACTCTGACAGTAATGATCAATAATGGCTTTACACCAAATAGAAATGATTATGAATTTTGCGCCAAAGTAGAAAATATGGTGATCCCT
CCACAAGGGTATTTTGGAATATCTGCTGCAACGGGAGGTCTTGCAGATGACCATGATGTTCTTTCTTTTCTGACTTTCCAATTGACTGAGCCTGGAAAGGAGCCACCTACACCAGATAAAGAAATTTC
AGAAAAAGAAAAAGAAAAGTATCAGGAGGAATTTGAGCACTTTCAACAAGAATTGGACAAAAAAAAAGAGGAATTCCAGAAGGATCACCCTGACCTTCAGGGACAACCTGCGGATGAAATATTTGAGA
GTGTAGGAGATCGTGAGCTAAGACAAATCTTTGAAGGACAGAATCGTATTCATCTTGAAATTAAGCAGCTGAACCGACAATTAGATATGATTCTTGATGAACAGAGAAGATATGTCTCTTCCCTGACA
GAAGAAATATCTAAGAGAGGAGCAGGGATCCCAGGGCAGCATGGGCAGATCACTCAACAAGAATTGGATACTGTTGTGAAAACTCAGCATGAGATTCTGAGACAAGTAAATGAAATGAAGAATTCCAT
GAGTGAAACTGTCAGACTGGTCAGTGGGATACAGCACCCCAGTTCTGCAGGAGGAGTCTATGAGACCACACAGCACTTCATGGACATCAAGGAGCACCTGCACATAGTGAAGAGGGACATAGACAACT
TAGTACAGCGAAATGTGCCATCCAATGAAAGATCAAAATGCCCAGAACTACCACCATTTCCATCATGTTTATCGACGGTTCACTTCATCGTATTTGTAATTGTACAGACACTGCTGTTCATTGGTTAC
ATCATGTATAGGACTCAGCAAGAAGCAGCTGCCAAAAAATTCTTTTGACCACCATTTTCATGTGTGTACATCATGTATGTATGTACAAAATGTCTTTTTGAGGGACTTATAAGTATTTAAATTACTTC
ATAGTCTAAATTATTAAATTTTATATAAAATAAAACATTGTTTAAACATTGATTTTTTTTTCGGTAAGAATAAACCTTAAAGATAACCACA

hide sequence

RefSeq Acc Id:

XM_013357604 ⟹ XP_013213058

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404944	30,144,591 - 30,169,193 (+)	NCBI
SpeTri2.0	NW_004936497	5,383,636 - 5,409,347 (+)	NCBI

Sequence:

show sequence

GCCGGCCTCTGCGTCCCAGAATCCAAGATGGCGGGATCCAGGCTAAGGGGTCCCCAGGCCAGAGCCTTGCCGCTTCTCTGCGCCCTGCTGCTGTCACTCAGTCGCTTCGTCCGGGGCGACGGCATGGG
AGGCGACCCCGCGGCCGCCGGTGCTGCGGACACGCCGGCTGTGATGCCACATCGCCGTTTCGAGTACAAATACAGCTTCAAGGGGCCGCACCTGGTGCAGAGCGATGGGACCGTGCCCTTCTGGGCCC
ACGCGGGGAATGCTATTGCAAGTTCAGATCAAATTCGAATAGCACCATCTTTAAAAAGCCAAAGAGGGTCAGTGTGGACAAAGACAAAAGCAGCCTTTGAGAACTGGGAATTGGAGGTGACATTTCGA
GTGACTGGAAGAGGTCGAATTGGAGCCGATGGCCTAGCAGTTTGGTATACAGAAAATCAAGGCTTGGAGGGCCCTGTGTTTGGATCAGCTGATATGTGGAATGGCGTTGGAATATTTTTTGATTCTTT
TGACAATGATGGAAAGAAAAATAATCCTGCTATAGTTATTGTAGGCAACAATGGACAAATCCATTATGACCATCAAAATGATGGTGCCACGCAAGCCCTAGCAAGTTGTCTGAGGGACTTTCGCAATA
AACCCTATCCTGTTCGGGCGAAGATTGTATATTACCAGAAAACTCTGACAGTAATGATCAATAATGGCTTTACACCAAATAGAAATGATTATGAATTTTGCGCCAAAGTAGAAAATATGGTGATCCCT
CCACAAGGGTATTTTGGAATATCTGCTGCAACGGGAGGTCTTGCAGATGACCATGATGTTCTTTCTTTTCTGACTTTCCAATTGACTGAGCCTGGAAAGGAGCCACCTACACCAGATAAAGAAATTTC
AGAAAAAGAAAAAGAAAAGTATCAGGAGGAATTTGAGCACTTTCAACAAGAATTGGACAAAAAAAAAGAGGAATTCCAGAAGGATCACCCTGACCTTCAGGGACAACCTGCGGATGAAATATTTGAGA
GTGTAGGAGATCGTGAGCTAAGACAAATCTTTGAAGGACAGAATCGTATTCATCTTGAAATTAAGCAGCTGAACCGACAATTAGATATGATTCTTGATGAACAGAGAAGATATGTCTCTTCCCTGACA
GAAGAAATATCTAAGAGAGGAGCAGGGATCCCAGGGCAGCATGGGCAGATCACTCAACAAGAATTGGATACTGTTGTGAAAACTCAGCATGAGATTCTGAGACAAGTAAATGAAATGAAGAATTCCAT
GAGTGAAACTGTCAGACTGGTCAGTGGGATACAGCACCCCAGTTCTGCAGGAGGAGTCTATGAGACCACACAGCACTTCATGGACATCAAGGAGCACCTGCACATAGTGAAGAGGGACATAGACAACT
TAGTACAGCGAAATGTGCCATCCAATGAAAGATCAAAATGCCCAGAACTACCACCATTTCCATCATGTTTATCGACGGTTCACTTCATCGTATTTGTAATTGTACAGACACTGCTGTTCATTGGTTAC
ATCATGTATAGGACTCAGCAAGAAGCAGCTGCCAAAAAATTCTTTTGACCACCATTTTCATGTGTGTACATCATGTGATCTGCCTCCTGTGGCGTCAACAAATGGAAGGGAAAATGGAGAAAGTAGAA
ATGGCATTTGTTAAATATTTACTCTTGCTGGTAATGAAAAGTACATATTAAAAACAATATATTTGATGTTTTCACCTTCAATAACCAAATGCTGGCAAAAGTATAGTTAAGCTGGAACTCTTTGTTGT
TATTAGTTACTGGCAATTTTTTAAATCTTTTTTTTTTCCCCCAAATACCATTAACCTAGTGAAACTGGGTTTGAGTCTTGGCTCTGCAACTTACTAGAGGTGGTTTTCAGTATCATCATAATCTTACA
TCGTTGTTAGCATTGTAAAAGAGAGTCTTTATAAAGAGATTTCAAAAAGTAACATACTAAGTTAATGGATCCCTTTCCTCTATAAACATAAAGAAATGCTGGATAAAAGATTTAAATACATAGATGAG
TATGAAAGAAATTAGAATTTAAAGATTGATTAGGGAGCTTGCTAGGGGTAAGGATAGCAAAAACTAAACTATATAAGCCCTGATACTGTGGTTGGAGGATATGTTCAGCTGGAGCTTGAGGGATGTGG
TTTTGGGCCTGGAAAACCCATTAGGTTTGAGCTAAGATGCTCAGATAAAGTTAGGACCCTGGCAAGTTGCTCCTTCAGTGGAAGTGGGCTAACAGAACCTTACACCCTGATGACAAGAGAAAACATAA
CAATCGTCTCTCCTTGGGGTTCTGGATAGGGAATAAAATTCTCTATAAGAAATTAAAGACCCAGCCTCATGCTTTATGCCATTGTAGCATCCAAATGACCTGCATGGTGTGGAATTTTCCAAGCCAAA
ACTAAATTAGTTCTGGTCTGGTAAATTCTAGGAGGCGGCAAAACAAAAGCACTCTTTAGCAATAATTCCACAACAAAAGCACATCAGACAACCCAGAACATCTAGTCCTAACTGAAATGAGCTCTAAA
AATCATACCCCGAACAAGAAAAATGTGAAAGAAATAGTAAATAAAAAACTTGGCACCTCCAAGAATCTGGGGTAACAGTGACAAAGAAAACCAATATGTACACTGTAAATGAGTTCAAAAGACTTGAG
TTTATTTAGACTAGAAATTATAAGGAAGGAAGGGAACACTGAAAAGAAGAGTAAGAAGTTATCTTGGTAGTTAACTTTAATACCCAGAGAACTTAAAATATGGGCAGAAAGATTAAATTGGACACTGC
TGAAAAAATGATTGCATTATATGTAAGAAGTCTGAAAAAAA

hide sequence


Protein RefSeqs	XP_005323076	(Get FASTA)	NCBI Sequence Viewer
	XP_013213058	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000011774.2

RefSeq Acc Id:

XP_013213058 ⟸ XM_013357604

- UniProtKB:

I3MKG2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAGSRLRGPQARALPLLCALLLSLSRFVRGDGMGGDPAAAGAADTPAVMPHRRFEYKYSFKGPHLVQSDGTVPFWAHAGNAIASSDQIRIAPSLKSQRGSVWTKTKAAFENWELEVTFRVTGRGRIGA
DGLAVWYTENQGLEGPVFGSADMWNGVGIFFDSFDNDGKKNNPAIVIVGNNGQIHYDHQNDGATQALASCLRDFRNKPYPVRAKIVYYQKTLTVMINNGFTPNRNDYEFCAKVENMVIPPQGYFGISA
ATGGLADDHDVLSFLTFQLTEPGKEPPTPDKEISEKEKEKYQEEFEHFQQELDKKKEEFQKDHPDLQGQPADEIFESVGDRELRQIFEGQNRIHLEIKQLNRQLDMILDEQRRYVSSLTEEISKRGAG
IPGQHGQITQQELDTVVKTQHEILRQVNEMKNSMSETVRLVSGIQHPSSAGGVYETTQHFMDIKEHLHIVKRDIDNLVQRNVPSNERSKCPELPPFPSCLSTVHFIVFVIVQTLLFIGYIMYRTQQEA
AAKKFF

hide sequence

RefSeq Acc Id:

XP_005323076 ⟸ XM_005323019

- UniProtKB:

I3MKG2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAGSRLRGPQARALPLLCALLLSLSRFVRGDGMGGDPAAAGAADTPAVMPHRRFEYKYSFKGPH
LVQSDGTVPFWAHAGNAIASSDQIRIAPSLKSQRGSVWTKTKAAFENWELEVTFRVTGRGRIGADGLAVWYTENQGLEGPVFGSADMWNGVGIFFDSFDNDGKKNNPAIVIVGNNGQIHYDHQNDGAT
QALASCLRDFRNKPYPVRAKIVYYQKTLTVMINNGFTPNRNDYEFCAKVENMVIPPQGYFGISAATGGLADDHDVLSFLTFQLTEPGKEPPTPDKEISEKEKEKYQEEFEHFQQELDKKKEEFQKDHP
DLQGQPADEIFESVGDRELRQIFEGQNRIHLEIKQLNRQLDMILDEQRRYVSSLTEEISKRGAGIPGQHGQITQQELDTVVKTQHEILRQVNEMKNSMSETVRLVSGIQHPSSAGGVYETTQHFMDIK
EHLHIVKRDIDNLVQRNVPSNERSKCPELPPFPSCLSTVHFIVFVIVQTLLFIGYIMYRTQQEAAAKKFF

hide sequence

Ensembl Acc Id:

ENSSTOP00000011774 ⟸ ENSSTOT00000013135

Protein Domains

L-type lectin-like

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000013136	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000013135.3	UniProtKB/TrEMBL
Gene3D-CATH	2.60.120.200	UniProtKB/TrEMBL
InterPro	ConA-like_dom_sf	UniProtKB/TrEMBL
	Intracellular_Lectin-GPT	UniProtKB/TrEMBL
	Lectin_leg	UniProtKB/TrEMBL
NCBI Gene	Lman1	ENTREZGENE
PANTHER	PTHR12223:SF32	UniProtKB/TrEMBL
	VESICULAR MANNOSE-BINDING LECTIN	UniProtKB/TrEMBL
Pfam	Lectin_leg-like	UniProtKB/TrEMBL
PROSITE	L_LECTIN_LIKE	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49899	UniProtKB/TrEMBL
UniProt	I3MKG2	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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