Dnase1l1 (deoxyribonuclease 1 like 1) - Rat Genome Database

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Gene: Dnase1l1 (deoxyribonuclease 1 like 1) Ictidomys tridecemlineatus
Analyze
Symbol: Dnase1l1
Name: deoxyribonuclease 1 like 1
RGD ID: 12629857
Description: ENCODES a protein that exhibits deoxyribonuclease I activity (inferred); DNA binding (inferred); DNA nuclease activity (inferred); INVOLVED IN DNA catabolic process (inferred); DNA metabolic process (inferred); ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN endoplasmic reticulum (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: deoxyribonuclease 1 like 1, transcript variant X1; deoxyribonuclease 1 like 1, transcript variant X2; deoxyribonuclease-1-like 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X119,413,626 - 119,420,791 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368091,151,202 - 1,159,029 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049368091,151,312 - 1,159,017 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Dnase1l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X119,413,626 - 119,420,791 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368091,151,202 - 1,159,029 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049368091,151,312 - 1,159,017 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNASE1L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X154,401,236 - 154,412,101 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX154,401,236 - 154,412,112 (-)EnsemblGRCh38hg38GRCh38
GRCh37X153,629,577 - 153,640,438 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X153,282,773 - 153,293,621 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X153,150,425 - 153,158,422NCBI
CeleraX153,790,635 - 153,801,484 (-)NCBICelera
Cytogenetic MapXq28NCBI
HuRefX142,206,968 - 142,217,816 (-)NCBIHuRef
CHM1_1X153,541,222 - 153,552,074 (-)NCBICHM1_1
T2T-CHM13v2.0X152,637,756 - 152,648,607 (-)NCBIT2T-CHM13v2.0
Dnase1l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X73,316,823 - 73,325,939 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX73,316,823 - 73,325,943 (-)EnsemblGRCm39 Ensembl
GRCm38X74,273,217 - 74,282,333 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX74,273,217 - 74,282,337 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X71,518,556 - 71,527,672 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X70,525,938 - 70,534,454 (-)NCBIMGSCv36mm8
CeleraX65,526,994 - 65,536,124 (-)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX37.94NCBI
Dnase1l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X157,208,230 - 157,216,812 (-)NCBIGRCr8
mRatBN7.2X152,056,942 - 152,065,518 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX152,056,942 - 152,065,518 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX154,198,071 - 154,206,552 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X157,761,304 - 157,769,785 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X155,433,103 - 155,441,584 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X156,429,521 - 156,438,066 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX156,429,585 - 156,438,066 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01152,169,678 - 152,178,213 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X160,327,966 - 160,336,447 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X160,404,391 - 160,412,828 (+)NCBI
Celera1135,831,332 - 135,839,813 (+)NCBICelera
Cytogenetic MapXq37NCBI
Dnase1l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955580907,582 - 914,243 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955580907,056 - 913,604 (-)NCBIChiLan1.0ChiLan1.0
DNASE1L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X154,376,064 - 154,385,167 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X154,379,690 - 154,388,048 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X143,842,920 - 143,851,795 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X153,712,050 - 153,725,868 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX153,712,054 - 153,725,868 (-)Ensemblpanpan1.1panPan2
DNASE1L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X122,101,992 - 122,109,240 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX122,101,992 - 122,109,165 (-)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0X125,243,686 - 125,250,933 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX125,243,302 - 125,250,882 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X121,012,760 - 121,020,007 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X123,527,626 - 123,534,873 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X123,289,507 - 123,296,773 (-)NCBIUU_Cfam_GSD_1.0
DNASE1L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX124,931,410 - 124,939,965 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X124,931,410 - 124,937,569 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
DNASE1L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366606566,628,194 - 66,636,944 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dnase1l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624946864,657 - 870,396 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624946858,638 - 869,859 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000011861   ⟹   ENSSTOP00000010638
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049368091,151,202 - 1,159,029 (-)Ensembl
RefSeq Acc Id: XM_005340638   ⟹   XP_005340695
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X119,413,626 - 119,420,787 (-)NCBI
SpeTri2.0NW_0049368091,151,362 - 1,159,017 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040287272   ⟹   XP_040143206
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X119,413,626 - 119,420,791 (-)NCBI
RefSeq Acc Id: XM_040287280   ⟹   XP_040143214
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X119,413,626 - 119,420,791 (-)NCBI
RefSeq Acc Id: XM_040287283   ⟹   XP_040143217
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X119,413,626 - 119,420,790 (-)NCBI
RefSeq Acc Id: XM_040287286   ⟹   XP_040143220
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X119,413,626 - 119,420,787 (-)NCBI
RefSeq Acc Id: XP_005340695   ⟸   XM_005340638
- Peptide Label: isoform X2
- UniProtKB: I3MI44 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040143214   ⟸   XM_040287280
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040143206   ⟸   XM_040287272
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040143217   ⟸   XM_040287283
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040143220   ⟸   XM_040287286
- Peptide Label: isoform X5
Ensembl Acc Id: ENSSTOP00000010638   ⟸   ENSSTOT00000011861

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000011867 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000011861.3 UniProtKB/TrEMBL
Gene3D-CATH 3.60.10.10 UniProtKB/TrEMBL
InterPro DNase_I UniProtKB/TrEMBL
  Endo/exonu/phosph_ase_sf UniProtKB/TrEMBL
  Endo/exonuclease/phosphatase UniProtKB/TrEMBL
NCBI Gene Dnase1l1 ENTREZGENE
PANTHER DEOXYRIBONUCLEASE UniProtKB/TrEMBL
  DEOXYRIBONUCLEASE-1-LIKE 1 UniProtKB/TrEMBL
Pfam Exo_endo_phos UniProtKB/TrEMBL
PIRSF DNase_I_euk UniProtKB/TrEMBL
PRINTS DNASEI UniProtKB/TrEMBL
SMART DNaseIc UniProtKB/TrEMBL
Superfamily-SCOP SSF56219 UniProtKB/TrEMBL
UniProt I3MI44 ENTREZGENE, UniProtKB/TrEMBL