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Gene: Doc2a (double C2 domain alpha) Ictidomys tridecemlineatus

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Symbol:

Doc2a

Name:

double C2 domain alpha

RGD ID:

12623428

Description:

ENCODES a protein that exhibits metal ion binding (inferred); INVOLVED IN synaptic vesicle exocytosis (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 16p11.2 deletion syndrome, 220-kb (ortholog); FOUND IN extrinsic component of synaptic vesicle membrane (ortholog); glutamatergic synapse (ortholog); lysosome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

double C2-like domain-containing protein alpha

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DOC2A (double C2 domain alpha)	NCBI	Ortholog
Mus musculus (house mouse):	Doc2a (double C2, alpha)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Doc2a (double C2 domain alpha)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Doc2a (double C2 domain alpha)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DOC2A (double C2 domain alpha)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DOC2A (double C2 domain alpha)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	DOC2A (double C2 domain alpha)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	DOC2A (double C2 domain alpha)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Doc2a (double C2 domain alpha)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	124,359,243 - 124,365,997 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936501	12,458,482 - 12,463,199 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936501	12,458,537 - 12,463,857 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Doc2a	Squirrel	autism spectrum disorder		ISO	RGD:731423	8554872	ClinVar Annotator: match by term: Autism spectrum disorder	ClinVar	PMID:18184952\|PMID:25255310
Doc2a	Squirrel	autistic disorder		ISO	RGD:731423	8554872	ClinVar Annotator: match by term: Autism	ClinVar	PMID:21681106\|PMID:30208311
Doc2a	Squirrel	chromosome 16p11.2 deletion syndrome, 220-kb		ISO	RGD:731423	8554872	ClinVar Annotator: match by term: Distal 16p11.2 microdeletion syndrome	ClinVar
Doc2a	Squirrel	chromosome 16p11.2 deletion syndrome, 593-kb		ISO	RGD:731423	8554872	ClinVar Annotator: match by term: Proximal 16p11.2 microdeletion syndrome	ClinVar	PMID:25741868\|PMID:31690835
Doc2a	Squirrel	chromosome 16p11.2 duplication syndrome		ISO	RGD:731423	8554872	ClinVar Annotator: match by term: Chromosome 16p11.2 duplication syndrome	ClinVar	PMID:31690835
Doc2a	Squirrel	coronin-1A deficiency		ISO	RGD:731423	8554872	ClinVar Annotator: match by term: Immunodeficiency 8	ClinVar	PMID:14615364\|PMID:18836449\|PMID:22515636\|PMID:22623405\|PMID:22726847\|PMID:22744660\|PMID:23363396\|PMID:24372385\|PMID:24811917\|PMID:25073507\|PMID:2825199\|PMID:28492532
Doc2a	Squirrel	dilated cardiomyopathy		ISO	RGD:731423	8554872	ClinVar Annotator: match by term: Dilated Cardiomyopathy, Dominant	ClinVar	PMID:28492532
Doc2a	Squirrel	Episodic Kinesigenic Dyskinesia		ISO	RGD:731423	8554872	ClinVar Annotator: match by term: Episodic kinesigenic dyskinesia	ClinVar	PMID:14615364\|PMID:18836449\|PMID:22515636\|PMID:22623405\|PMID:22726847\|PMID:22744660\|PMID:23363396\|PMID:24372385\|PMID:24811917\|PMID:25073507\|PMID:2825199\|PMID:28492532
Doc2a	Squirrel	episodic kinesigenic dyskinesia 1		ISO	RGD:731423	8554872	ClinVar Annotator: match by term: Paroxysmal kinesigenic dyskinesia	ClinVar	PMID:14615364\|PMID:18836449\|PMID:22515636\|PMID:22623405\|PMID:22726847\|PMID:22744660\|PMID:23363396\|PMID:24372385\|PMID:24811917\|PMID:25073507\|PMID:2825199\|PMID:28492532
Doc2a	Squirrel	Glycogen Storage Disease XII		ISO	RGD:731423	8554872	ClinVar Annotator: match by term: Red cell aldolase deficiency	ClinVar	PMID:14615364\|PMID:18836449\|PMID:22515636\|PMID:22623405\|PMID:22726847\|PMID:22744660\|PMID:23363396\|PMID:24372385\|PMID:24811917\|PMID:25073507\|PMID:2825199\|PMID:28492532
Doc2a	Squirrel	Neurodevelopmental Disorders		ISO	RGD:731423	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder	ClinVar	PMID:25741868
Doc2a	Squirrel	schizophrenia		ISO	RGD:731423	8554872	ClinVar Annotator: match by term: Schizophrenia	ClinVar	PMID:21681106\|PMID:30208311
Doc2a	Squirrel	spondylocostal dysostosis 5		ISO	RGD:731423	8554872	ClinVar Annotator: match by term: SCOLIOSIS, CONGENITAL, WITH OR WITHOUT RIB ANOMALIES \| ClinVar Annotator: more ...	ClinVar	PMID:23335591\|PMID:23806086\|PMID:24088041\|PMID:25564734\|PMID:25741868
Doc2a	Squirrel	spondylocostal dysostosis 5		ISO	RGD:731423	8554872	ClinVar Annotator: match by term: Spondylocostal dysostosis 5	ClinVar	PMID:23335591\|PMID:23806086\|PMID:24088041\|PMID:25564734

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Doc2a	Squirrel	calcium-dependent activation of synaptic vesicle fusion	involved_in	IEA	UniProtKB:Q7TNF0\|ensembl:ENSMUSP00000070119	150520179		Ensembl	GO_REF:0000107
Doc2a	Squirrel	chemical synaptic transmission	involved_in	IEA	ARBA:ARBA00028185	150520179		UniProt	GO_REF:0000117
Doc2a	Squirrel	exocytosis	involved_in	IEA	PANTHER:PTN000002042	150520179		TreeGrafter	GO_REF:0000118
Doc2a	Squirrel	regulation of calcium ion-dependent exocytosis	involved_in	IEA	UniProtKB:Q14183\|UniProtKB:Q7TNF0\|ensembl:ENSMUSP00000070119\|ensembl:ENSP00000340017	150520179		Ensembl	GO_REF:0000107
Doc2a	Squirrel	regulation of calcium ion-dependent exocytosis	involved_in	IEA	PANTHER:PTN000002042	150520179		TreeGrafter	GO_REF:0000118
Doc2a	Squirrel	spontaneous neurotransmitter secretion	involved_in	IEA	PANTHER:PTN000002042	150520179		TreeGrafter	GO_REF:0000118
Doc2a	Squirrel	spontaneous neurotransmitter secretion	acts_upstream_of_or_within	IEA	UniProtKB:Q7TNF0\|ensembl:ENSMUSP00000070119	150520179		Ensembl	GO_REF:0000107
Doc2a	Squirrel	synaptic vesicle exocytosis		ISO	RGD:620518	9068941		RGD	PMID:10651871\|REF_RGD_ID:1357914

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Doc2a	Squirrel	extrinsic component of synaptic vesicle membrane	is_active_in	ISO	RGD:620518	9068941	PMID:9115738	SynGO	PMID:9115738\|REF_RGD_ID:1357915
Doc2a	Squirrel	extrinsic component of synaptic vesicle membrane	located_in	IEA	PANTHER:PTN000002042	150520179		TreeGrafter	GO_REF:0000118
Doc2a	Squirrel	glutamatergic synapse	is_active_in	ISO	RGD:620518	9068941	PMID:22036572	SynGO	PMID:22036572\|REF_RGD_ID:155230732
Doc2a	Squirrel	lysosome	located_in	ISO	RGD:620518	9068941	PMID:18354201	UniProt	PMID:18354201\|REF_RGD_ID:8554104
Doc2a	Squirrel	membrane	located_in	IEA	InterPro:IPR001565	150520179		InterPro	GO_REF:0000002
Doc2a	Squirrel	synapse	located_in	IEA	PANTHER:PTN000002042	150520179		TreeGrafter	GO_REF:0000118

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Doc2a	Squirrel	metal ion binding	enables	IEA	UniProtKB-KW:KW-0479	150520179		UniProt	GO_REF:0000043
Doc2a	Squirrel	protein binding	enables	ISO	UniProtKB:B2RUP2	9068941	PMID:18354201	UniProt	PMID:18354201
Doc2a	Squirrel	protein binding	enables	ISO	UniProtKB:Q8TF42	9068941	PMID:24722188, PMID:28514442, PMID:32296183, PMID:33961781	IntAct	PMID:24722188\|PMID:28514442\|PMID:32296183\|PMID:33961781

PMID:22301074

Doc2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	124,359,243 - 124,365,997 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936501	12,458,482 - 12,463,199 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936501	12,458,537 - 12,463,857 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DOC2A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	30,005,514 - 30,023,228 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	30,005,514 - 30,023,270 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	30,016,835 - 30,024,917 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	29,924,336 - 29,929,902 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	16	29,924,335 - 29,929,902	NCBI
Celera	16	72,773,320 - 72,778,886 (+)	NCBI		Celera
Cytogenetic Map	16	p11.2	NCBI
HuRef	16	27,677,850 - 27,683,416 (-)	NCBI		HuRef
CHM1_1	16	31,232,624 - 31,238,190 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	30,288,154 - 30,305,880 (-)	NCBI		T2T-CHM13v2.0

Doc2a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	126,446,525 - 126,451,877 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	126,446,588 - 126,451,877 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	126,846,983 - 126,852,705 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	126,847,416 - 126,852,705 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	133,991,067 - 133,996,219 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	126,638,701 - 126,643,853 (+)	NCBI		MGSCv36	mm8
Celera	7	126,695,691 - 126,700,843 (+)	NCBI		Celera
Cytogenetic Map	7	F3	NCBI
cM Map	7	69.25	NCBI

Doc2a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	190,887,306 - 190,893,057 (+)	NCBI		GRCr8
mRatBN7.2	1	181,457,415 - 181,462,528 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	181,458,390 - 181,462,030 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	189,809,758 - 189,813,398 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	196,995,831 - 196,999,471 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	189,663,042 - 189,666,682 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	198,282,828 - 198,288,611 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	198,284,473 - 198,288,113 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	205,263,516 - 205,268,791 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	186,027,821 - 186,031,461 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	186,177,701 - 186,181,341 (+)	NCBI
Celera	1	179,113,629 - 179,117,269 (+)	NCBI		Celera
Cytogenetic Map	1	q36	NCBI

Doc2a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955493	6,947,512 - 6,953,835 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955493	6,948,089 - 6,953,835 (+)	NCBI	ChiLan1.0	ChiLan1.0

DOC2A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	30,755,311 - 30,762,196 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	35,463,559 - 35,470,605 (+)	NCBI		NHGRI_mPanPan1
PanPan1.1	16	30,378,922 - 30,385,982 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	30,378,922 - 30,384,142 (-)	Ensembl	panpan1.1		panPan2

DOC2A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	18,041,551 - 18,046,779 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	18,041,296 - 18,046,265 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	19,618,518 - 19,623,772 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	18,175,690 - 18,180,937 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	18,175,456 - 18,181,065 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	17,974,905 - 17,980,142 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	17,890,274 - 17,895,521 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	18,205,875 - 18,211,122 (-)	NCBI		UU_Cfam_GSD_1.0

DOC2A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	18,210,965 - 18,216,102 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	18,211,264 - 18,216,096 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

DOC2A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	26,649,818 - 26,656,755 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	26,651,949 - 26,656,075 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666068	2,876,676 - 2,883,649 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Doc2a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624782	13,217,736 - 13,221,457 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624782	13,217,553 - 13,221,763 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005323831	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040276703	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040276704	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040276705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040276706	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040276707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000001547 ⟹ ENSSTOP00000001386

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936501	12,458,482 - 12,463,199 (+)	Ensembl

RefSeq Acc Id:

XM_005323831 ⟹ XP_005323888

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	124,360,337 - 124,365,997 (+)	NCBI
SpeTri2.0	NW_004936501	12,458,537 - 12,463,857 (+)	NCBI

Sequence:

show sequence

CCCGACTCGCGCTCTTCTTGCTGGCCGCCCTGGGAATCGCCGGCCGCCGCCGCCCAGCCTGCGCCCGCCGGCTGCCCAGTGCCTGGCACCTGTTGGAGGCACAGAAACAGCCAGGGGTGCTGCATGAG
GGGCCGCAGGGGCGACCGCATGACCATCAATATCCAGGAGCACATGGCCATCAACGTGTGCCCCGGGCCCATCCGGCCTATCCGCCAGATCTCTGACTACTTCCCGCGCCGGGGACCAGGACCTGAAG
GGGGGGGCGGGGGCTGCCGGGAGGCCCCAGCTCATCTGGCACCCCTGGCTCTGGCTCCCCCTGCGGCCCTCCTTGGGGCCACCACGCCTGAGGACCGAGCTGAGGTGGACAGCTATGATTCAGACGAT
ACCACTGCCCTGGGCACACTGGAGTTCGACCTTCTCTATGACCAGGCCTCCTGCACTCTGCACTGTAGCATCCTCAGGGCCAAGGGCCTCAAGCCCATGGATTTCAATGGCCTGGCTGATCCCTATGT
TAAGCTGCACCTGCTGCCTGGAGCCTGCAAGGCCAATAAGCTAAAAACGAAGACTCAGAGGAATACGCTGAATCCTGTGTGGAATGAGGACCTGACCTACAGTGGGATCACAGACGATGACATCACTC
ACAAGGTGCTCAGGATCTCTGTCTGTGATGAAGACAAGCTGAGCCACAATGAGTTTATCGGGGAGATCCGAGTGCCCCTCCGCCGCCTCAAGCCTTCGCAGAAGAAGCATTTTAACATCTGCCTTGAG
CGCCAAGTCCCGCTGGCTTCACCCTCTTCCATGTCTGCGGCACTAAGGGGCATCTCCTGTTACCTGAAGGAGCTGGAGCAGGCAGAGCACGGACCTGGGCTGTTAGAGGAGCGCGGGCGCATCCTGCT
GAGCCTCAGCTACAGCTCTCGGCGCCGGGGACTGCTGGTGGGCATCATGCGCTGTGCACACCTGGCTGCCATGGACGTCAACGGCTACTCTGACCCTTATGTTAAGACGTACCTGAGACCAGATGTGG
ATAAGAAATCCAAGCATAAAACACGTGTGAAGAAGAAGACTCTAAACCCGGAATTTAATGAGGAATTTTTCTACGAGATGGAACTCTCCATTCTAGCCACCAAGACTCTGGAAGTCACTGTCTGGGAC
TACGACATTGGCAAATCCAATGACTTCATAGGTGGTGTGTCCCTGGGGCCAGGCGCTCGAGGAGAGGCACGAAAGCACTGGAGCGACTGTCTACAGCAGCTGGACACAGCTCTGGAGCGCTGGCACAC
CCTGACCAGCGAGTTGCCCCCTGCGGCTGGGGCTCCTCCCTCCACCTGAGTGGACAGCTGCTGCCCGGCACAGGCCCCTCGGGCCAGGTCCAGTACCCAACCCTCGCACGAGTGTGTTGCACGTTTAC
ACAGGGTGGGATGCCCCCACCCTACGCCACCTTATTTGTGTGAGAGTCTCTGTGACCGTGGGTCTGTCTTGTGAGGGACTGTGGAGATTTATATTCACATATGCAACTTCCTCTTGCCTGACTCGCTA
TCACCTGCAAATATGCAAACCACCCCGCCTGCACACCTGCGGGGAGTGCTGTCAGAGCCACACCCCAGGGACCCCTGCTCCTTTCTCCAGCCTCTCCAGGCTGCCCCACCCCTCTCCGCACGGGAGGA
GGTTGGATTCGGGGAGGTTTGGAGGAGGAGAATGTTCCCAAAAGAGGACACGCAAGAGAAGAGCCACTCCTTTAATACACAAAAGTCCTAGCCCTGTACAGCTGCCCTTCTAAAGGGGTGGCCATCAC
TGGGTCTCTGCCTCCCTGTGAGGTAGCAGATGCTTCTGGCCACTCATTTAAATAGCTGTCCCCTAGATGGGGCTGGGATGTGAGGGCAGGGCCCCTGCCACCTTCCTGGGGGACACTCGTGCATGTTT
ACGCCTTCTCTGATTGTGTCAGTGGCCGAAGCATGGCAACTGGGCGTCAATAAACATCTCTGAGGAA

hide sequence

RefSeq Acc Id:

XM_040276703 ⟹ XP_040132637

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	124,360,172 - 124,365,997 (+)	NCBI

RefSeq Acc Id:

XM_040276704 ⟹ XP_040132638

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	124,359,244 - 124,365,997 (+)	NCBI

RefSeq Acc Id:

XM_040276705 ⟹ XP_040132639

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	124,359,243 - 124,365,997 (+)	NCBI

RefSeq Acc Id:

XM_040276706 ⟹ XP_040132640

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	124,360,855 - 124,365,997 (+)	NCBI

RefSeq Acc Id:

XM_040276707 ⟹ XP_040132641

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	124,360,288 - 124,365,997 (+)	NCBI


Protein RefSeqs	XP_005323888	(Get FASTA)	NCBI Sequence Viewer
	XP_040132637	(Get FASTA)	NCBI Sequence Viewer
	XP_040132638	(Get FASTA)	NCBI Sequence Viewer
	XP_040132639	(Get FASTA)	NCBI Sequence Viewer
	XP_040132640	(Get FASTA)	NCBI Sequence Viewer
	XP_040132641	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000001386.2

RefSeq Acc Id:

XP_005323888 ⟸ XM_005323831

- Peptide Label:

isoform X1

- Sequence:

show sequence

MRGRRGDRMTINIQEHMAINVCPGPIRPIRQISDYFPRRGPGPEGGGGGCREAPAHLAPLALAPPAALLGATTPEDRAEVDSYDSDDTTALGTLEFDLLYDQASCTLHCSILRAKGLKPMDFNGLADP
YVKLHLLPGACKANKLKTKTQRNTLNPVWNEDLTYSGITDDDITHKVLRISVCDEDKLSHNEFIGEIRVPLRRLKPSQKKHFNICLERQVPLASPSSMSAALRGISCYLKELEQAEHGPGLLEERGRI
LLSLSYSSRRRGLLVGIMRCAHLAAMDVNGYSDPYVKTYLRPDVDKKSKHKTRVKKKTLNPEFNEEFFYEMELSILATKTLEVTVWDYDIGKSNDFIGGVSLGPGARGEARKHWSDCLQQLDTALERW
HTLTSELPPAAGAPPST

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RefSeq Acc Id:	XP_040132639 ⟸ XM_040276705
- Peptide Label:	isoform X3
- UniProtKB:	I3LYS8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040132638 ⟸ XM_040276704
- Peptide Label:	isoform X3
- UniProtKB:	I3LYS8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040132637 ⟸ XM_040276703
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_040132641 ⟸ XM_040276707
- Peptide Label:	isoform X3
- UniProtKB:	I3LYS8 (UniProtKB/TrEMBL)

Protein Domains

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000001550	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000001547.3	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.150	UniProtKB/TrEMBL
InterPro	C2_dom	UniProtKB/TrEMBL
	C2_domain_sf	UniProtKB/TrEMBL
	Doc2	UniProtKB/TrEMBL
	Rabphilin/DOC2/Noc2	UniProtKB/TrEMBL
	Rabphilin_Doc2_C2A	UniProtKB/TrEMBL
	Synaptotagmin	UniProtKB/TrEMBL
NCBI Gene	Doc2a	ENTREZGENE
PANTHER	PTHR45729	UniProtKB/TrEMBL
	PTHR45729:SF1	UniProtKB/TrEMBL
Pfam	PF00168	UniProtKB/TrEMBL
PIRSF	Doc2	UniProtKB/TrEMBL
PRINTS	C2DOMAIN	UniProtKB/TrEMBL
	SYNAPTOTAGMN	UniProtKB/TrEMBL
PROSITE	PS50004	UniProtKB/TrEMBL
SMART	SM00239	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49562	UniProtKB/TrEMBL
UniProt	I3LYS8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar