Doc2a (double C2 domain alpha) - Rat Genome Database

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Gene: Doc2a (double C2 domain alpha) Ictidomys tridecemlineatus
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Symbol: Doc2a
Name: double C2 domain alpha
RGD ID: 12623428
Description: ENCODES a protein that exhibits metal ion binding (inferred); INVOLVED IN spontaneous neurotransmitter secretion (ortholog); synaptic vesicle exocytosis (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 16p11.2 deletion syndrome, 593-kb (ortholog); FOUND IN extrinsic component of synaptic vesicle membrane (ortholog); glutamatergic synapse (ortholog); lysosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: double C2-like domain-containing protein alpha
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344124,359,243 - 124,365,997 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650112,458,482 - 12,463,199 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650112,458,537 - 12,463,857 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Doc2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344124,359,243 - 124,365,997 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650112,458,482 - 12,463,199 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650112,458,537 - 12,463,857 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DOC2A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381630,005,514 - 30,023,228 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1630,005,514 - 30,023,270 (-)EnsemblGRCh38hg38GRCh38
GRCh371630,016,835 - 30,024,917 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361629,924,336 - 29,929,902 (-)NCBINCBI36Build 36hg18NCBI36
Build 341629,924,335 - 29,929,902NCBI
Celera1672,773,320 - 72,778,886 (+)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1627,677,850 - 27,683,416 (-)NCBIHuRef
CHM1_11631,232,624 - 31,238,190 (-)NCBICHM1_1
T2T-CHM13v2.01630,288,154 - 30,305,880 (-)NCBIT2T-CHM13v2.0
Doc2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397126,446,525 - 126,451,877 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7126,446,588 - 126,451,877 (+)EnsemblGRCm39 Ensembl
GRCm387126,846,983 - 126,852,705 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7126,847,416 - 126,852,705 (+)EnsemblGRCm38mm10GRCm38
MGSCv377133,991,067 - 133,996,219 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367126,638,701 - 126,643,853 (+)NCBIMGSCv36mm8
Celera7126,695,691 - 126,700,843 (+)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.25NCBI
Doc2a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81190,887,306 - 190,893,057 (+)NCBIGRCr8
mRatBN7.21181,457,415 - 181,462,528 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1181,458,390 - 181,462,030 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1189,809,758 - 189,813,398 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01196,995,831 - 196,999,471 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01189,663,042 - 189,666,682 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01198,282,828 - 198,288,611 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1198,284,473 - 198,288,113 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01205,263,516 - 205,268,791 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41186,027,821 - 186,031,461 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11186,177,701 - 186,181,341 (+)NCBI
Celera1179,113,629 - 179,117,269 (+)NCBICelera
Cytogenetic Map1q36NCBI
Doc2a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554936,947,512 - 6,953,835 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554936,948,089 - 6,953,835 (+)NCBIChiLan1.0ChiLan1.0
DOC2A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21830,755,311 - 30,762,196 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11635,463,559 - 35,470,605 (+)NCBINHGRI_mPanPan1
PanPan1.11630,378,922 - 30,385,982 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1630,378,922 - 30,384,142 (-)Ensemblpanpan1.1panPan2
DOC2A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1618,041,551 - 18,046,779 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl618,041,296 - 18,046,265 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha619,618,518 - 19,623,772 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0618,175,690 - 18,180,937 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl618,175,456 - 18,181,065 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1617,974,905 - 17,980,142 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0617,890,274 - 17,895,521 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0618,205,875 - 18,211,122 (-)NCBIUU_Cfam_GSD_1.0
DOC2A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl318,210,965 - 18,216,102 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1318,211,264 - 18,216,096 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
DOC2A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1526,649,818 - 26,656,755 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl526,651,949 - 26,656,075 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660682,876,676 - 2,883,649 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Doc2a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478213,217,736 - 13,221,457 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478213,217,553 - 13,221,763 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000001547   ⟹   ENSSTOP00000001386
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493650112,458,482 - 12,463,199 (+)Ensembl
RefSeq Acc Id: XM_005323831   ⟹   XP_005323888
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344124,360,337 - 124,365,997 (+)NCBI
SpeTri2.0NW_00493650112,458,537 - 12,463,857 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040276703   ⟹   XP_040132637
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344124,360,172 - 124,365,997 (+)NCBI
RefSeq Acc Id: XM_040276704   ⟹   XP_040132638
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344124,359,244 - 124,365,997 (+)NCBI
RefSeq Acc Id: XM_040276705   ⟹   XP_040132639
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344124,359,243 - 124,365,997 (+)NCBI
RefSeq Acc Id: XM_040276706   ⟹   XP_040132640
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344124,360,855 - 124,365,997 (+)NCBI
RefSeq Acc Id: XM_040276707   ⟹   XP_040132641
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344124,360,288 - 124,365,997 (+)NCBI
RefSeq Acc Id: XP_005323888   ⟸   XM_005323831
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040132639   ⟸   XM_040276705
- Peptide Label: isoform X3
- UniProtKB: I3LYS8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040132638   ⟸   XM_040276704
- Peptide Label: isoform X3
- UniProtKB: I3LYS8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040132637   ⟸   XM_040276703
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040132641   ⟸   XM_040276707
- Peptide Label: isoform X3
- UniProtKB: I3LYS8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040132640   ⟸   XM_040276706
- Peptide Label: isoform X3
- UniProtKB: I3LYS8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000001386   ⟸   ENSSTOT00000001547
Protein Domains
C2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000001550 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000001547.3 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  Doc2 UniProtKB/TrEMBL
  Rabphilin/DOC2/Noc2 UniProtKB/TrEMBL
  Rabphilin_Doc2_C2A UniProtKB/TrEMBL
  Synaptotagmin UniProtKB/TrEMBL
NCBI Gene Doc2a ENTREZGENE
PANTHER PTHR45729 UniProtKB/TrEMBL
  PTHR45729:SF1 UniProtKB/TrEMBL
Pfam PF00168 UniProtKB/TrEMBL
PIRSF Doc2 UniProtKB/TrEMBL
PRINTS C2DOMAIN UniProtKB/TrEMBL
  SYNAPTOTAGMN UniProtKB/TrEMBL
PROSITE PS50004 UniProtKB/TrEMBL
SMART SM00239 UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/TrEMBL
UniProt I3LYS8 ENTREZGENE, UniProtKB/TrEMBL