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Gene: Ly6g6c (lymphocyte antigen 6 family member G6C) Ictidomys tridecemlineatus

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Symbol:

Ly6g6c

Name:

lymphocyte antigen 6 family member G6C

RGD ID:

12618237

Description:

ENCODES a protein that exhibits identical protein binding (inferred); INVOLVED IN response to bacterium (ortholog); ASSOCIATED WITH proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN external side of plasma membrane (inferred); membrane (inferred); protein-containing complex (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

lymphocyte antigen 6 complex locus protein G6c; lymphocyte antigen 6 complex, locus G6C

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	35,746,096 - 35,749,845 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936727	1,810,340 - 1,815,251 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936727	1,812,328 - 1,815,242 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ly6g6c	Squirrel	proteasome-associated autoinflammatory syndrome 1		ISO	LY6G6C (Homo sapiens)	8554872	ClinVar Annotator: match by term: Proteasome-associated autoinflammatory syndrome 1	ClinVar	PMID:28492532

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ly6g6c	Squirrel	response to bacterium	acts_upstream_of_or_within	ISO	Ly6g6c (Mus musculus)	9068941	PMID:23012479	MGI	PMID:23012479

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ly6g6c	Squirrel	external side of plasma membrane	located_in	IEA	UniProtKB:O95867 and ensembl:ENSP00000364978	150520179		Ensembl	GO_REF:0000107
Ly6g6c	Squirrel	external side of plasma membrane	located_in	IEA	PANTHER:PTN000783580	150520179		TreeGrafter	GO_REF:0000118
Ly6g6c	Squirrel	membrane	located_in	IEA	UniProtKB-KW:KW-0472	150520179		UniProt	GO_REF:0000043
Ly6g6c	Squirrel	protein-containing complex	part_of	IEA	UniProtKB:O95867 and ensembl:ENSP00000364978	150520179		Ensembl	GO_REF:0000107
Ly6g6c	Squirrel	protein-containing complex	part_of	IEA	PANTHER:PTN000783580	150520179		TreeGrafter	GO_REF:0000118

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ly6g6c	Squirrel	identical protein binding	enables	IEA	UniProtKB:O95867 and ensembl:ENSP00000364978	150520179		Ensembl	GO_REF:0000107
Ly6g6c	Squirrel	protein binding	enables	ISO	UniProtKB:Q8WVX3-2 more ...	9068941	PMID:32296183	IntAct	PMID:32296183

PMID:30032202

Ly6g6c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	35,746,096 - 35,749,845 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936727	1,810,340 - 1,815,251 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936727	1,812,328 - 1,815,242 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LY6G6C
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	31,718,648 - 31,721,746 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	31,718,648 - 31,721,746 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	31,686,425 - 31,689,523 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	31,794,404 - 31,797,489 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	31,794,403 - 31,797,489	NCBI
Celera	6	33,284,651 - 33,287,736 (-)	NCBI		Celera
Cytogenetic Map	6	p21.33	NCBI
HuRef	6	31,472,653 - 31,475,739 (-)	NCBI		HuRef
CHM1_1	6	31,688,542 - 31,691,628 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	31,571,681 - 31,575,898 (-)	NCBI		T2T-CHM13v2.0

Ly6g6c
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	35,286,301 - 35,289,024 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	35,284,364 - 35,289,026 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	35,067,325 - 35,070,048 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	35,065,388 - 35,070,050 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	35,204,270 - 35,206,993 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	34,675,381 - 34,678,104 (+)	NCBI		MGSCv36	mm8
Celera	17	38,164,006 - 38,166,732 (+)	NCBI		Celera
Cytogenetic Map	17	B1	NCBI
cM Map	17	18.59	NCBI

Ly6g6c
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	3,758,290 - 3,760,987 (-)	NCBI		GRCr8
mRatBN7.2	20	3,753,632 - 3,757,205 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	3,753,632 - 3,758,867 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	4,453,106 - 4,455,802 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	3,815,160 - 3,817,856 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	4,353,045 - 4,355,741 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	5,056,851 - 5,060,398 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	5,057,701 - 5,059,933 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	7,130,631 - 7,133,328 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	3,817,976 - 3,820,673 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	3,818,202 - 3,820,900 (-)	NCBI
Celera	20	4,269,727 - 4,272,424 (+)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

Ly6g6c
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955437	257,942 - 261,054 (-)	NCBI	ChiLan1.0	ChiLan1.0

LY6G6C
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	46,195,925 - 46,199,038 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	42,157,381 - 42,160,527 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	31,380,026 - 31,383,190 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	32,268,752 - 32,271,926 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	32,268,752 - 32,271,809 (-)	Ensembl	panpan1.1		panPan2

LY6G6C
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	1,197,828 - 1,201,660 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	1,198,301 - 1,201,102 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	1,334,395 - 1,338,249 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	1,343,212 - 1,347,065 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	1,343,199 - 1,346,484 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	1,202,508 - 1,206,353 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	1,269,715 - 1,273,576 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	1,337,345 - 1,341,201 (-)	NCBI		UU_Cfam_GSD_1.0

LY6G6C
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	23,829,791 - 23,833,196 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	23,829,790 - 23,833,610 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

LY6G6C
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	40,300,918 - 40,304,891 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	40,301,880 - 40,304,464 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	31,631,084 - 31,634,985 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ly6g6c
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	24,490,422 - 24,493,555 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	24,490,361 - 24,493,619 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_021735697	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040282385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040282386	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000013063 ⟹ ENSSTOP00000011707

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936727	1,810,340 - 1,814,777 (+)	Ensembl

Ensembl Acc Id:

ENSSTOT00000031434 ⟹ ENSSTOP00000031632

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936727	1,811,717 - 1,815,251 (+)	Ensembl

Ensembl Acc Id:

ENSSTOT00000033764 ⟹ ENSSTOP00000029072

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936727	1,812,386 - 1,813,967 (+)	Ensembl

RefSeq Acc Id:

XM_021735697 ⟹ XP_021591372

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	35,746,096 - 35,749,845 (-)	NCBI
SpeTri2.0	NW_004936727	1,812,328 - 1,815,242 (+)	NCBI

Sequence:

show sequence

CCCTGAAAATCTACTCTTGACAACGGCTGTGACTACTACCATTCTTGGGACCCTCACCATGAAAGGCCTTCTTCTGCTCACCCTGTCTGCTCTGCTCTGCTGGGTCTCAGCTGATATCCGCTGTCACT
CCTGCTACAAAGTCCCTGTGCTGGGCTGCGTGGACCGGCAGTCCTGCCGTCTGGAGCCAGGACACCAGTGCCTAACAACAAATGTGTACCTCGGGAAGATGTGGGTTTTCTCCAACCTGCGCTGTGGC
ACACCAGAAGAGCCCTGTCGGGAGGCCTTCAACCAAACCAACCACAAGCTGGGCCTGAACTATAACACCACCTGCTGCAGCAAAGACAACTGCAATAGCCCAGCCCCCCGGCCCACGCCCACCCTGAC
CCTGGTTTTCCTCACTTCCTTGGCTGGCCTTGGCCTCTGGCTGCTGCACTGAAGCTCATTCTGTGGCTGTCCTTCCTCCCCACCTGCCTTAGCCAGAGCCTCTCTCCTTATGACTCCCCATCTCCTGG
TTTCCCAGAATGATCTCTCTCTGGATCCCCTTCCTCTGAAGAGCATTTCTCCAGTCCCTTCTCATTTCTTTAATGAGACAGTGCCCAGAGTGGTCTCCCTATCTATTTTTCCCAAACTGTACCCTCTG
CTCTGTTTTTCCTTAGTCCTTTCCCTTTTCCCTTTAGACCACTCCAGATCCTCCACTGGCTCATGAAGGACTTCTACTTTGTCTTCTACACTCTGAGGTGCCCTCCTTGAGAAGGAGGGATTGGGATC
TGGGCGGGAAATGGGGCTTCTGTCCTGTCTCCAATGAAAGCCCCAGGAAGGACCTGATGACCTCACTCTATGGGATTGATTCACCAAACCCTCTACTCATCTTTTCCATTTTGAGTAATAAATGTCTG
TGTCT

hide sequence

RefSeq Acc Id:

XM_040282385 ⟹ XP_040138319

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	35,746,096 - 35,749,459 (-)	NCBI

RefSeq Acc Id:

XM_040282386 ⟹ XP_040138320

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	35,746,096 - 35,749,693 (-)	NCBI


Protein RefSeqs	XP_021591372	(Get FASTA)	NCBI Sequence Viewer
	XP_040138319	(Get FASTA)	NCBI Sequence Viewer
	XP_040138320	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000011707.3
	ENSSTOP00000029072.1
	ENSSTOP00000031632.1
GenBank Protein	KAG3289104	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_021591372 ⟸ XM_021735697
- Peptide Label:	isoform X1
- Sequence:	show sequence MKGLLLLTLSALLCWVSADIRCHSCYKVPVLGCVDRQSCRLEPGHQCLTTNVYLGKMWVFSNLRCGTPEEPCREAFNQTNHKLGLNYNTTCCSKDNCNSPAPRPTPTLTLVFLTSLAGLGLWLLH hide sequence

RefSeq Acc Id:	XP_040138320 ⟸ XM_040282386
- Peptide Label:	isoform X3
- UniProtKB:	A0A287DDK0 (UniProtKB/TrEMBL), I3MKB2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040138319 ⟸ XM_040282385
- Peptide Label:	isoform X2
- UniProtKB:	I3MKB2 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSSTOP00000031632 ⟸ ENSSTOT00000031434

Ensembl Acc Id:

ENSSTOP00000029072 ⟸ ENSSTOT00000033764

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000013066	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000013063.3	UniProtKB/TrEMBL
	ENSSTOT00000031434.1	UniProtKB/TrEMBL
	ENSSTOT00000033764.1	UniProtKB/TrEMBL
InterPro	LY6G6C	UniProtKB/TrEMBL
	Snake_toxin-like_sf	UniProtKB/TrEMBL
NCBI Gene	Ly6g6c	ENTREZGENE
PANTHER	LYMPHOCYTE ANTIGEN 6 COMPLEX LOCUS PROTEIN G6C	UniProtKB/TrEMBL
	PTHR32149	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57302	UniProtKB/TrEMBL
UniProt	A0A287D661_ICTTR	UniProtKB/TrEMBL
	A0A287DDK0	ENTREZGENE, UniProtKB/TrEMBL
	I3MKB2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-02-01	Ly6g6c	lymphocyte antigen 6 family member G6C		lymphocyte antigen 6 complex, locus G6C	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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