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Gene: Cnot3 (CCR4-NOT transcription complex subunit 3) Ictidomys tridecemlineatus

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Symbol:

Cnot3

Name:

CCR4-NOT transcription complex subunit 3

RGD ID:

12611714

Description:

INVOLVED IN positive regulation of cold-induced thermogenesis (inferred); regulation of DNA-templated transcription (inferred); regulation of stem cell population maintenance (inferred); PARTICIPATES IN microRNA pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); genetic disease (ortholog); Intellectual Developmental Disorder with Speech Delay, Autism, and Dysmorphic Facies (ortholog); FOUND IN CCR4-NOT complex (inferred); CCR4-NOT core complex (inferred); cytoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

CCR4-NOT transcription complex subunit 3, transcript variant X1; CCR4-NOT transcription complex subunit 3, transcript variant X2; CCR4-NOT transcription complex subunit 3, transcript variant X3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	2,666,566 - 2,681,791 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936994	258,938 - 273,765 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936994	256,022 - 271,235 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cnot3	Squirrel	autism spectrum disorder		ISO	CNOT3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Autism spectrum disorder	ClinVar	PMID:25741868
Cnot3	Squirrel	genetic disease		ISO	CNOT3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar	PMID:25741868 more ...
Cnot3	Squirrel	Intellectual Developmental Disorder with Speech Delay, Autism, and Dysmorphic Facies		ISO	CNOT3 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:25741868 more ...
Cnot3	Squirrel	intellectual disability		ISO	CNOT3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Intellectual disability	ClinVar	PMID:25741868 and PMID:28492532

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cnot3	Squirrel	Prostatic Neoplasms		ISO	CNOT3 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:29610475 and PMID:29662167
Cnot3	Squirrel	T-cell acute lymphoblastic leukemia		ISO	CNOT3 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:23263491

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cnot3	Squirrel	Intellectual Developmental Disorder with Speech Delay, Autism, and Dysmorphic Facies		ISO	CNOT3 (Homo sapiens)	7240710		OMIM

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cnot3	Squirrel	positive regulation of cold-induced thermogenesis	involved_in	IEA	UniProtKB:Q8K0V4 and ensembl:ENSMUSP00000039098	150520179		Ensembl	GO_REF:0000107
Cnot3	Squirrel	regulation of DNA-templated transcription	involved_in	IEA	UniRule:UR001597788	150520179		UniProt	GO_REF:0000104
Cnot3	Squirrel	regulation of DNA-templated transcription	involved_in	IEA	InterPro:IPR007207 more ...	150520179		InterPro	GO_REF:0000002
Cnot3	Squirrel	regulation of stem cell population maintenance	involved_in	IEA	UniProtKB:O75175 more ...	150520179		Ensembl	GO_REF:0000107
Cnot3	Squirrel	regulation of stem cell population maintenance	involved_in	IEA	ARBA:ARBA00026296	150520179		UniProt	GO_REF:0000117
Cnot3	Squirrel	regulation of translation	involved_in	IEA	UniProtKB-KW:KW-0810	150520179		UniProt	GO_REF:0000043
Cnot3	Squirrel	regulatory ncRNA-mediated gene silencing	involved_in	IEA	UniProtKB-KW:KW-0943	150520179		UniProt	GO_REF:0000043
Cnot3	Squirrel	regulatory ncRNA-mediated gene silencing	involved_in	IEA	UniRule:UR001597788	150520179		UniProt	GO_REF:0000104
Cnot3	Squirrel	trophectodermal cell differentiation	involved_in	IEA	UniProtKB:Q8K0V4 and ensembl:ENSMUSP00000039098	150520179		Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cnot3	Squirrel	CCR4-NOT complex	part_of	IEA	UniProtKB:O75175 and ensembl:ENSP00000221232	150520179		Ensembl	GO_REF:0000107
Cnot3	Squirrel	CCR4-NOT core complex	part_of	IEA	UniRule:UR001597788	150520179		UniProt	GO_REF:0000104
Cnot3	Squirrel	CCR4-NOT core complex	part_of	IEA	InterPro:IPR012270 and InterPro:IPR040168	150520179		InterPro	GO_REF:0000002
Cnot3	Squirrel	cytoplasm	located_in	IEA	UniProtKB-KW:KW-0963	150520179		UniProt	GO_REF:0000043
Cnot3	Squirrel	nucleus	located_in	IEA	InterPro:IPR007207	150520179		InterPro	GO_REF:0000002
Cnot3	Squirrel	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	150520179		UniProt	GO_REF:0000044
Cnot3	Squirrel	nucleus	located_in	IEA	UniRule:UR001597788	150520179		UniProt	GO_REF:0000104
Cnot3	Squirrel	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	150520179		UniProt	GO_REF:0000043
Cnot3	Squirrel	P-body	located_in	IEA	UniProtKB-SubCell:SL-0230	150520179		UniProt	GO_REF:0000044
Cnot3	Squirrel	P-body	located_in	IEA	UniProtKB:Q8K0V4 and ensembl:ENSMUSP00000039098	150520179		Ensembl	GO_REF:0000107
Cnot3	Squirrel	P-body	located_in	IEA	UniRule:UR001597788	150520179		UniProt	GO_REF:0000104

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cnot3	Squirrel	protein binding	enables	ISO	UniProtKB:Q6ZQ73	9068941	PMID:12207886	IntAct	PMID:12207886
Cnot3	Squirrel	protein binding	enables	ISO	PR:Q8VEG6	9068941	PMID:17452450	MGI	PMID:17452450
Cnot3	Squirrel	protein binding	enables	ISO	UniProtKB:P16284 more ...	9068941	PMID:32814053	IntAct	PMID:32814053
Cnot3	Squirrel	protein binding	enables	ISO	UniProtKB:Q9HCJ0	9068941	PMID:21981923	IntAct	PMID:21981923
Cnot3	Squirrel	protein binding	enables	ISO	UniProtKB:A5YKK6 more ...	9068941	PMID:16778766	IntAct	PMID:16778766
Cnot3	Squirrel	protein binding	enables	ISO	UniProtKB:Q9HCJ0 and UniProtKB:Q9NZN8	9068941	PMID:21984185	IntAct	PMID:21984185
Cnot3	Squirrel	protein binding	enables	ISO	UniProtKB:Q9UFF9	9068941	PMID:10637334	IntAct	PMID:10637334
Cnot3	Squirrel	protein binding	enables	ISO	UniProtKB:P60321 more ...	9068941	PMID:24736845	BHF-UCL	PMID:24736845
Cnot3	Squirrel	protein binding	enables	ISO	UniProtKB:A5YKK6 and UniProtKB:Q9NZN8	9068941	PMID:26496610	IntAct	PMID:26496610
Cnot3	Squirrel	protein binding	enables	ISO	UniProtKB:Q9NZN8	9068941	PMID:16189514 more ...	IntAct	PMID:16189514 more ...
Cnot3	Squirrel	protein binding	enables	ISO	UniProtKB:A5YKK6 more ...	9068941	PMID:33961781	IntAct	PMID:33961781
Cnot3	Squirrel	protein binding	enables	ISO	UniProtKB:Q96LI5 and UniProtKB:Q9ULM6	9068941	PMID:17452450	IntAct	PMID:17452450
Cnot3	Squirrel	protein binding	enables	ISO	UniProtKB:P60322	9068941	PMID:20133598	UniProt	PMID:20133598
Cnot3	Squirrel	protein binding	enables	ISO	UniProtKB:P50616	9068941	PMID:18377426 and PMID:28514442	IntAct	PMID:18377426 and PMID:28514442
Cnot3	Squirrel	protein binding	enables	ISO	UniProtKB:O75155	9068941	PMID:12207886	UniProt	PMID:12207886

RGD Manual Annotations

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cnot3	Squirrel	microRNA pathway		ISO	CNOT3 (Homo sapiens)	9068941		RGD	PMID:23337855 and REF_RGD_ID:9850101

PMID:22301074	PMID:30032202

Cnot3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	2,666,566 - 2,681,791 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936994	258,938 - 273,765 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936994	256,022 - 271,235 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CNOT3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	54,137,762 - 54,155,681 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	54,137,749 - 54,155,681 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	54,641,478 - 54,659,419 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	59,333,261 - 59,351,239 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	59,333,260 - 59,351,239	NCBI
Celera	19	51,682,719 - 51,700,732 (+)	NCBI		Celera
Cytogenetic Map	19	q13.42	NCBI
HuRef	19	50,957,822 - 50,975,744 (+)	NCBI		HuRef
CHM1_1	19	54,642,739 - 54,660,727 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	57,217,961 - 57,235,947 (+)	NCBI		T2T-CHM13v2.0

Cnot3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	3,646,717 - 3,664,108 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	3,648,267 - 3,664,108 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	3,645,247 - 3,661,109 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	3,645,268 - 3,661,109 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	3,596,871 - 3,612,711 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	3,239,140 - 3,264,187 (+)	NCBI		MGSCv36	mm8
Celera	7	3,557,188 - 3,573,023 (+)	NCBI		Celera
Cytogenetic Map	7	A1	NCBI
cM Map	7	2.1	NCBI

Cnot3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	74,471,284 - 74,487,527 (-)	NCBI		GRCr8
mRatBN7.2	1	65,555,924 - 65,572,167 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	65,555,924 - 65,572,167 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	71,004,048 - 71,020,291 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	79,427,022 - 79,443,265 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	72,754,167 - 72,770,170 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	64,130,823 - 64,147,066 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	64,130,908 - 64,147,251 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	63,123,105 - 63,139,396 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	63,868,853 - 63,885,095 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	63,945,601 - 63,961,798 (-)	NCBI
Celera	1	63,280,966 - 63,297,090 (-)	NCBI		Celera
Cytogenetic Map	1	q12	NCBI

Cnot3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955604	109,340 - 122,001 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955604	109,522 - 122,001 (-)	NCBI	ChiLan1.0	ChiLan1.0

CNOT3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	60,143,163 - 60,161,334 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	62,064,979 - 62,083,138 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	51,071,167 - 51,089,289 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	59,913,040 - 59,931,108 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	59,913,040 - 59,931,108 (+)	Ensembl	panpan1.1		panPan2

CNOT3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	103,057,392 - 103,070,612 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	103,057,542 - 103,066,887 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	103,119,211 - 103,132,429 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	103,702,778 - 103,715,996 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	103,702,790 - 103,715,996 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	103,340,821 - 103,354,027 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	103,102,254 - 103,115,463 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	103,815,980 - 103,829,201 (-)	NCBI		UU_Cfam_GSD_1.0

CNOT3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	55,973,612 - 55,991,287 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	55,975,628 - 55,993,140 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	53,227,109 - 53,243,171 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CNOT3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	46,814,695 - 46,832,657 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	46,819,903 - 46,836,838 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	26,905,339 - 26,921,474 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cnot3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624832	2,429,809 - 2,441,869 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624832	2,429,809 - 2,441,886 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005342273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021721367	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021721368	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000025416 ⟹ ENSSTOP00000017135

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936994	258,938 - 273,765 (+)	Ensembl

RefSeq Acc Id:

XM_005342273 ⟹ XP_005342330

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	2,666,566 - 2,679,786 (-)	NCBI
SpeTri2.0	NW_004936994	259,727 - 271,235 (+)	NCBI

Sequence:

show sequence

GCCAGCAGCGTCTGTCTCCAAGGGAGTATGAAGAGAGTGCGTCTGTAGGGCAGGGAAGATGGCGGACAAGCGCAAACTCCAAGGTGAGATTGATCGCTGCCTCAAGAAGGTGTCCGAGGGTGTGGAGC
AGTTTGAAGATATTTGGCAGAAGCTCCACAACGCAGCCAACGCGAACCAGAAAGAAAAGTATGAGGCTGACCTAAAGAAGGAGATTAAGAAGCTACAACGGCTGAGGGACCAGATCAAGACATGGGTA
GCATCCAATGAGATCAAGGACAAAAGGCAGCTTATTGACAACCGCAAGCTTATTGAGACGCAAATGGAACGGTTCAAAGTTGTGGAAAGAGAGACCAAAACCAAAGCCTATAGCAAGGAGGGCCTGGG
CCTGGCACAGAAGGTGGATCCCGCCCAGAAGGAAAAGGAAGAGGTTGGCCAGTGGCTCACGAATACCATCGACACCCTAAACATGCAGGTGGACCAGTTTGAGAGTGAAGTGGAATCGCTGTCAGTGC
AAACGCGCAAGAAGAAGGGCGACAAGGATAAGCAGGACCGGATTGAGGGCTTGAAGCGGCACATCGAGAAGCACCGCTACCATGTGCGCATGCTGGAGACCATCCTGCGCATGCTGGACAATGACTCC
ATCCTCGTGGATGCCATTCGCAAGATCAAGGATGATGTTGAGTACTACGTTGACTCCTCTCAGGACCCTGACTTTGAGGAGAATGAGTTCCTCTATGATGACCTGGATCTCGAGGACATTCCACAGGC
GCTGGTCGCCACCTCCCCCCCCAGCCACAGCCACATGGAGGACGAGATCTTCAACCAGTCCAGCAGCACGCCCACCTCGACCACCTCCAGCTCTCCCATCCCCCCCAGTCCAGCCAACTGCACCACGG
AGAACTCTGAAGATGATAAGAAGAGAGGACGCTCGACAGATAGTGAAGTCAGCCAGTCTCCAGCCAAAAATGGTTCCAAGCCTGTCCACAGCAACCAGCATCCCCAGTCCCCAGCTATGCCACCCACC
TACCCCTCTGGTCCCCCGCCTGCCACCTCTGCCTTGAGCACCACCCCTGGCAACAATGGGGCACCTGCCCCAGCAGCACCCCCAAGTGCCCTGGGCCCTAAGGCCAGTCCAGCTCCCAGCCACAACTC
GGGCACCCCTGCCCCCTATGCTCAGGCTGTGGCCCCACCAGCCCCCAGTGGGCCCAGTGCTGCCCAGCCCCGACCCCCCAGTGCCCAGCCTGGCGGGGGTGGTGGTGGCGGTGGTGGAGGGAGCGGCG
GTAATAGTAACAGCAGCACAGGTGGAGGGGCTGGCAAGCAGAACGGTGCCACCAGCTACAGCTCAGTCGTGGCAGACAGCCCTGCAGAGGTGGCCCTGAGCAGCAGTGGAGGCAACAGTGCTAGCAGC
CAGGCCCTGGGTCCGGCCTCAGGTCCCCACAATCCACCTCCCAGCACCTCGAAAGAATCCAGTGCGGCAGCCCCAACAGGGGCTGGCGGTGTGGCCCCAGGCTCAGGGAACAACTCAGGGGGACCCAG
CCTTCTAGTGCCACTGCCTGTGAACCCCCCCAGCTCCCCAACGCCCAGCTTCAGTGAGGCCAAGGCAGCTGGTGCTCTGCTTAATGGACCTCCGCAGTTCAGCACCACCCCAGAAGTCAAGGCTCCTG
AACCTCTGAGCTCCCTGAAGTCCATGGCAGAGCGGGCAGCCATCAGCTCTGGTATTGAGGACCCTGTGCCAACGTTACACCTAACGGAGCGAGACATCATCCTGAGCAGCACATCAGCACCTCCGGCC
TCAGCCCAGCCACCCCTACAACTGTCAGAGGTGAACATACCACTGTCGCTGGGTGTGTGTCCACTGGGGCCAGTGCCCCTCACCAAGGAGCAGCTCTACCAGCAGGCCATGGAGGAGGCTGCCTGGCA
CCATATGCCCCACCCCTCTGACTCCGAGCGCATCCGGCAGTACCTACCCCGGAACCCTTGCCCGACGCCCCCCTACCACCACCAGATGCCGCCCCCACACTCGGACACCGTGGAGTTCTATCAGCGCC
TGTCGACTGAGACGCTCTTCTTCATCTTCTACTATCTGGAGGGCACTAAAGCACAGTACCTGGCAGCCAAGGCCCTAAAGAAGCAATCATGGCGATTCCACACCAAGTACATGATGTGGTTCCAGAGG
CACGAGGAGCCCAAGACCATCACCGATGAGTTTGAGCAGGGCACCTACATCTACTTTGACTACGAGAAGTGGGGCCAGCGGAAGAAGGAAGGCTTCACCTTTGAGTACCGCTACCTGGAGGACCGGGA
CCTCCAGTGACACCGGCCCCCTCTACCTGACCCTTCCCCCGCATGCTGATCCCCCTGCCCAGGTGAGGGCCCTGCCCTGGAAGACTGGGGAGGCCCCAGGCCATGGGGCACCCCCTCCCCCAGGAAGC
AGGGAGAGGGCCGGGAGGTTTTCTCTTCCTCTCAGCCCCACCCTGGGGGCCCCGGGGGGGGCGGGGCGAGGGCTGCCCCCTCCTCCCCTCCCCAGTGAGGGACATTTTTTGGTAAACCTATTTTCATT
TTGGAAAATATTTATGAATAAATAGTTTTATATGACGGCTGGCAGCACAGCCTCTCCTGTA

hide sequence

RefSeq Acc Id:

XM_021721368 ⟹ XP_021577043

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	2,666,700 - 2,681,791 (-)	NCBI
SpeTri2.0	NW_004936994	256,022 - 271,098 (+)	NCBI

Sequence:

show sequence

TGCCTCTCCGGGTGTCAAGTCCACCGCGGTGCGGGTGTCGGGGCCGGTTAGCTCCCCGGGTCTG
GGTGAAGCCTCCCGAGCCCACTCTCCGTGCTGTTGCGTCTGTCTCCAAGGGAGTATGAAGAGAGTGCGTCTGTAGGGCAGGGAAGATGGCGGACAAGCGCAAACTCCAAGGTGAGATTGATCGCTGCC
TCAAGAAGGTGTCCGAGGGTGTGGAGCAGTTTGAAGATATTTGGCAGAAGCTCCACAACGCAGCCAACGCGAACCAGAAAGAAAAGTATGAGGCTGACCTAAAGAAGGAGATTAAGAAGCTACAACGG
CTGAGGGACCAGATCAAGACATGGGTAGCATCCAATGAGATCAAGGACAAAAGGCAGCTTATTGACAACCGCAAGCTTATTGAGACGCAAATGGAACGGTTCAAAGTTGTGGAAAGAGAGACCAAAAC
CAAAGCCTATAGCAAGGAGGGCCTGGGCCTGGCACAGAAGGTGGATCCCGCCCAGAAGGAAAAGGAAGAGGTTGGCCAGTGGCTCACGAATACCATCGACACCCTAAACATGCAGGTGGACCAGTTTG
AGAGTGAAGTGGAATCGCTGTCAGTGCAAACGCGCAAGAAGAAGGGCGACAAGGATCAGAAGCAGGACCGGATTGAGGGCTTGAAGCGGCACATCGAGAAGCACCGCTACCATGTGCGCATGCTGGAG
ACCATCCTGCGCATGCTGGACAATGACTCCATCCTCGTGGATGCCATTCGCAAGATCAAGGATGATGTTGAGTACTACGTTGACTCCTCTCAGGACCCTGACTTTGAGGAGAATGAGTTCCTCTATGA
TGACCTGGATCTCGAGGACATTCCACAGGCGCTGGTCGCCACCTCCCCCCCCAGCCACAGCCACATGGAGGACGAGATCTTCAACCAGTCCAGCAGCACGCCCACCTCGACCACCTCCAGCTCTCCCA
TCCCCCCCAGTCCAGCCAACTGCACCACGGAGAACTCTGAAGATGATAAGAAGAGAGGACGCTCGACAGATAGTGAAGTCAGCCAGTCTCCAGCCAAAAATGGTTCCAAGCCTGTCCACAGCAACCAG
CATCCCCAGTCCCCAGCTATGCCACCCACCTACCCCTCTGGTCCCCCGCCTGCCACCTCTGCCTTGAGCACCACCCCTGGCAACAATGGGGCACCTGCCCCAGCAGCACCCCCAAGTGCCCTGGGCCC
TAAGGCCAGTCCAGCTCCCAGCCACAACTCGGGCACCCCTGCCCCCTATGCTCAGGCTGTGGCCCCACCAGCCCCCAGTGGGCCCAGTGCTGCCCAGCCCCGACCCCCCAGTGCCCAGCCTGGCGGGG
GTGGTGGTGGCGGTGGTGGAGGGAGCGGCGGTAATAGTAACAGCAGCACAGGTGGAGGGGCTGGCAAGCAGAACGGTGCCACCAGCTACAGCTCAGTCGTGGCAGACAGCCCTGCAGAGGTGGCCCTG
AGCAGCAGTGGAGGCAACAGTGCTAGCAGCCAGGCCCTGGGTCCGGCCTCAGGTCCCCACAATCCACCTCCCAGCACCTCGAAAGAATCCAGTGCGGCAGCCCCAACAGGGGCTGGCGGTGTGGCCCC
AGGCTCAGGGAACAACTCAGGGGGACCCAGCCTTCTAGTGCCACTGCCTGTGAACCCCCCCAGCTCCCCAACGCCCAGCTTCAGTGAGGCCAAGGCAGCTGGTGCTCTGCTTAATGGACCTCCGCAGT
TCAGCACCACCCCAGAAGTCAAGGCTCCTGAACCTCTGAGCTCCCTGAAGTCCATGGCAGAGCGGGCAGCCATCAGCTCTGGTATTGAGGACCCTGTGCCAACGTTACACCTAACGGAGCGAGACATC
ATCCTGAGCAGCACATCAGCACCTCCGGCCTCAGCCCAGCCACCCCTACAACTGTCAGAGGTGAACATACCACTGTCGCTGGGTGTGTGTCCACTGGGGCCAGTGCCCCTCACCAAGGAGCAGCTCTA
CCAGCAGGCCATGGAGGAGGCTGCCTGGCACCATATGCCCCACCCCTCTGACTCCGAGCGCATCCGGCAGTACCTACCCCGGAACCCTTGCCCGACGCCCCCCTACCACCACCAGATGCCGCCCCCAC
ACTCGGACACCGTGGAGTTCTATCAGCGCCTGTCGACTGAGACGCTCTTCTTCATCTTCTACTATCTGGAGGGCACTAAAGCACAGTACCTGGCAGCCAAGGCCCTAAAGAAGCAATCATGGCGATTC
CACACCAAGTACATGATGTGGTTCCAGAGGCACGAGGAGCCCAAGACCATCACCGATGAGTTTGAGCAGGGCACCTACATCTACTTTGACTACGAGAAGTGGGGCCAGCGGAAGAAGGAAGGCTTCAC
CTTTGAGTACCGCTACCTGGAGGACCGGGACCTCCAGTGACACCGGCCCCCTCTACCTGACCCTTCCCCCGCATGCTGATCCCCCTGCCCAGGTGAGGGCCCTGCCCTGGAAGACTGGGGAGGCCCCA
GGCCATGGGGCACCCCCTCCCCCAGGAAGCAGGGAGAGGGCCGGGAGGTTTTCTCTTCCTCTCAGCCCCACCCTGGGGGCCC

hide sequence


Protein RefSeqs	XP_005342330	(Get FASTA)	NCBI Sequence Viewer
	XP_021577043	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000017135.1
GenBank Protein	KAG3255672	(Get FASTA)	NCBI Sequence Viewer
	KAG3255673	(Get FASTA)	NCBI Sequence Viewer
	KAG3255674	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005342330 ⟸ XM_005342273
- Peptide Label:	isoform X2
- UniProtKB:	I3MYD9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVASNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKEKEEVGQWL TNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIEKHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALVATSPPSHSHMEDEIFNQ SSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQSPAKNGSKPVHSNQHPQSPAMPPTYPSGPPPATSALSTTPGNNGAPAPAAPPSALGPKASPAPSHNSGTPAPYAQAVAPPAPSGPS AAQPRPPSAQPGGGGGGGGGGSGGNSNSSTGGGAGKQNGATSYSSVVADSPAEVALSSSGGNSASSQALGPASGPHNPPPSTSKESSAAAPTGAGGVAPGSGNNSGGPSLLVPLPVNPPSSPTPSFSE AKAAGALLNGPPQFSTTPEVKAPEPLSSLKSMAERAAISSGIEDPVPTLHLTERDIILSSTSAPPASAQPPLQLSEVNIPLSLGVCPLGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNP CPTPPYHHQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ hide sequence

RefSeq Acc Id:

XP_021577043 ⟸ XM_021721368

- Peptide Label:

isoform X1

- Sequence:

show sequence

MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVASNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKEKEEVGQWL
TNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDQKQDRIEGLKRHIEKHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALVATSPPSHSHMEDEIFN
QSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQSPAKNGSKPVHSNQHPQSPAMPPTYPSGPPPATSALSTTPGNNGAPAPAAPPSALGPKASPAPSHNSGTPAPYAQAVAPPAPSGP
SAAQPRPPSAQPGGGGGGGGGGSGGNSNSSTGGGAGKQNGATSYSSVVADSPAEVALSSSGGNSASSQALGPASGPHNPPPSTSKESSAAAPTGAGGVAPGSGNNSGGPSLLVPLPVNPPSSPTPSFS
EAKAAGALLNGPPQFSTTPEVKAPEPLSSLKSMAERAAISSGIEDPVPTLHLTERDIILSSTSAPPASAQPPLQLSEVNIPLSLGVCPLGPVPLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRN
PCPTPPYHHQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ

hide sequence

Ensembl Acc Id:

ENSSTOP00000017135 ⟸ ENSSTOT00000025416

Protein Domains

CCR4-Not complex component Not N-terminal NOT2/NOT3/NOT5 C-terminal

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000028248	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000025416.2	UniProtKB/TrEMBL
Gene3D-CATH	2.30.30.1020	UniProtKB/TrEMBL
InterPro	CCR4-NOT_su2/3/5_N_sf	UniProtKB/TrEMBL
	CCR4-NOT_su3/5	UniProtKB/TrEMBL
	Not2/3/5	UniProtKB/TrEMBL
	NOT2/3/5_C	UniProtKB/TrEMBL
	Not_N	UniProtKB/TrEMBL
NCBI Gene	Cnot3	ENTREZGENE
PANTHER	PTHR23326	UniProtKB/TrEMBL
Pfam	NOT2_3_5	UniProtKB/TrEMBL
	Not3	UniProtKB/TrEMBL
PIRSF	NOT_su_3_5	UniProtKB/TrEMBL
UniProt	I3MYD9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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