Cnot3 (CCR4-NOT transcription complex subunit 3) - Rat Genome Database

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Gene: Cnot3 (CCR4-NOT transcription complex subunit 3) Heterocephalus glaber
Analyze
Symbol: Cnot3
Name: CCR4-NOT transcription complex subunit 3
RGD ID: 18929501
Description: INVOLVED IN positive regulation of cold-induced thermogenesis (ortholog); trophectodermal cell differentiation (ortholog); PARTICIPATES IN microRNA pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); Developmental Disabilities (ortholog); genetic disease (ortholog); FOUND IN CCR4-NOT complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248322,429,809 - 2,441,869 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248322,429,809 - 2,441,886 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cnot3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248322,429,809 - 2,441,869 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248322,429,809 - 2,441,886 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CNOT3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381954,137,762 - 54,155,681 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1954,137,749 - 54,155,681 (+)EnsemblGRCh38hg38GRCh38
GRCh371954,641,478 - 54,659,419 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361959,333,261 - 59,351,239 (+)NCBINCBI36Build 36hg18NCBI36
Build 341959,333,260 - 59,351,239NCBI
Celera1951,682,719 - 51,700,732 (+)NCBICelera
Cytogenetic Map19q13.42NCBI
HuRef1950,957,822 - 50,975,744 (+)NCBIHuRef
CHM1_11954,642,739 - 54,660,727 (+)NCBICHM1_1
T2T-CHM13v2.01957,217,961 - 57,235,947 (+)NCBIT2T-CHM13v2.0
Cnot3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3973,646,717 - 3,664,108 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl73,648,267 - 3,664,108 (+)EnsemblGRCm39 Ensembl
GRCm3873,645,247 - 3,661,109 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl73,645,268 - 3,661,109 (+)EnsemblGRCm38mm10GRCm38
MGSCv3773,596,871 - 3,612,711 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3673,239,140 - 3,264,187 (+)NCBIMGSCv36mm8
Celera73,557,188 - 3,573,023 (+)NCBICelera
Cytogenetic Map7A1NCBI
cM Map72.1NCBI
Cnot3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8174,471,284 - 74,487,527 (-)NCBIGRCr8
mRatBN7.2165,555,924 - 65,572,167 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl165,555,924 - 65,572,167 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx171,004,048 - 71,020,291 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0179,427,022 - 79,443,265 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0172,754,167 - 72,770,170 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0164,130,823 - 64,147,066 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl164,130,908 - 64,147,251 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0163,123,105 - 63,139,396 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4163,868,853 - 63,885,095 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1163,945,601 - 63,961,798 (-)NCBI
Celera163,280,966 - 63,297,090 (-)NCBICelera
Cytogenetic Map1q12NCBI
Cnot3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955604109,340 - 122,001 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955604109,522 - 122,001 (-)NCBIChiLan1.0ChiLan1.0
CNOT3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22060,143,163 - 60,161,334 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11962,064,979 - 62,083,138 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01951,071,167 - 51,089,289 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11959,913,040 - 59,931,108 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1959,913,040 - 59,931,108 (+)Ensemblpanpan1.1panPan2
CNOT3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11103,057,392 - 103,070,612 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1103,057,542 - 103,066,887 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1103,119,211 - 103,132,429 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01103,702,778 - 103,715,996 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1103,702,790 - 103,715,996 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11103,340,821 - 103,354,027 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01103,102,254 - 103,115,463 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01103,815,980 - 103,829,201 (-)NCBIUU_Cfam_GSD_1.0
Cnot3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093492,666,566 - 2,681,791 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936994258,938 - 273,765 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936994256,022 - 271,235 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNOT3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl655,973,612 - 55,991,287 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1655,975,628 - 55,993,140 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2653,227,109 - 53,243,171 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CNOT3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1646,814,695 - 46,832,657 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl646,819,903 - 46,836,838 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607326,905,339 - 26,921,474 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000012479   ⟹   ENSHGLP00000012344
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248322,429,809 - 2,441,869 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000012480   ⟹   ENSHGLP00000012345
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248322,430,056 - 2,430,871 (-)Ensembl
RefSeq Acc Id: XM_004866721   ⟹   XP_004866778
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248322,429,809 - 2,441,874 (-)NCBI
RefSeq Acc Id: XM_021246128   ⟹   XP_021101787
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248322,429,809 - 2,441,876 (-)NCBI
RefSeq Acc Id: XM_021246129   ⟹   XP_021101788
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248322,429,809 - 2,441,878 (-)NCBI
RefSeq Acc Id: XM_021246130   ⟹   XP_021101789
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248322,429,809 - 2,437,637 (-)NCBI
RefSeq Acc Id: XR_002389907
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248322,429,809 - 2,441,884 (-)NCBI
RefSeq Acc Id: XR_002389908
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248322,429,809 - 2,441,886 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004866778 (Get FASTA)   NCBI Sequence Viewer  
  XP_021101787 (Get FASTA)   NCBI Sequence Viewer  
  XP_021101788 (Get FASTA)   NCBI Sequence Viewer  
  XP_021101789 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000012344
Reference Protein Sequences
RefSeq Acc Id: XP_021101788   ⟸   XM_021246129
- Peptide Label: isoform X3
- UniProtKB: G5CBF6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021101787   ⟸   XM_021246128
- Peptide Label: isoform X1
- UniProtKB: G5CBF6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004866778   ⟸   XM_004866721
- Peptide Label: isoform X2
- UniProtKB: G5CBF6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021101789   ⟸   XM_021246130
- Peptide Label: isoform X4
- UniProtKB: G5CBF6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000012344   ⟸   ENSHGLT00000012479
RefSeq Acc Id: ENSHGLP00000012345   ⟸   ENSHGLT00000012480


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000008821 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000012479 ENTREZGENE
Gene3D-CATH CCR4-NOT complex subunit 2/3/5, C-terminal domain UniProtKB/TrEMBL
InterPro CCR4-NOT_su2/3/5_C_sf UniProtKB/TrEMBL
  CCR4-NOT_su3/5 UniProtKB/TrEMBL
  Not2/3/5 UniProtKB/TrEMBL
  NOT2/3/5_C UniProtKB/TrEMBL
  Not_N UniProtKB/TrEMBL
NCBI Gene Cnot3 ENTREZGENE
PANTHER CCR4 NOT-RELATED UniProtKB/TrEMBL
  CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 3 UniProtKB/TrEMBL
Pfam NOT2_3_5 UniProtKB/TrEMBL
  Not3 UniProtKB/TrEMBL
PIRSF NOT_su_3_5 UniProtKB/TrEMBL
PRINTS PRICHEXTENSN UniProtKB/TrEMBL
UniProt G5CBF6 ENTREZGENE, UniProtKB/TrEMBL