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Gene: Twist2 (twist family bHLH transcription factor 2) Ictidomys tridecemlineatus

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Symbol:

Twist2

Name:

twist family bHLH transcription factor 2

RGD ID:

12607943

Description:

ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription factor activity (ortholog); protein domain specific binding (ortholog); INVOLVED IN cell population proliferation (ortholog); cornea development in camera-type eye (ortholog); embryonic cranial skeleton morphogenesis (ortholog); ASSOCIATED WITH ablepharon macrostomia syndrome (ortholog); Barber-Say syndrome (ortholog); Bethlem Myopathy 1A (ortholog); FOUND IN transcription regulator complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

twist basic helix-loop-helix transcription factor 2; twist-related protein 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	191,151,472 - 191,191,746 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936745	2,028,286 - 2,067,948 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936745	2,067,272 - 2,067,948 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Twist2	Squirrel	ablepharon macrostomia syndrome		ISO	RGD:735468	8554872	ClinVar Annotator: match by term: Ablepharon macrostomia syndrome	ClinVar	PMID:11038439\|PMID:11807864\|PMID:15103726\|PMID:2036354\|PMID:21595001\|PMID:25741868\|PMID:26119818\|PMID:8746822
Twist2	Squirrel	Barber-Say syndrome		ISO	RGD:735468	8554872	ClinVar Annotator: match by term: Barber-Say syndrome	ClinVar	PMID:16650233\|PMID:1867254\|PMID:19760652\|PMID:20799330\|PMID:20830793\|PMID:25741868\|PMID:26119818\|PMID:27092433\|PMID:28680619\|PMID:8368246\|PMID:9674915
Twist2	Squirrel	Bethlem Myopathy 1A		ISO	RGD:735468	8554872	ClinVar Annotator: match by term: Bethlem myopathy 1A	ClinVar	PMID:26004199\|PMID:28492532
Twist2	Squirrel	chromosome 2q37 deletion syndrome		ISO	RGD:735468	8554872	ClinVar Annotator: match by term: Chromosome 2q37 deletion syndrome	ClinVar	PMID:25741868
Twist2	Squirrel	D-2-hydroxyglutaric aciduria 1		ISO	RGD:735468	8554872	ClinVar Annotator: match by term: D-2-hydroxyglutaric aciduria 1	ClinVar	PMID:16081310\|PMID:20020533\|PMID:20691407\|PMID:21384162\|PMID:21820098\|PMID:24715439\|PMID:28492532\|PMID:30848064\|PMID:31488895
Twist2	Squirrel	Focal Facial Dermal Dysplasia 3		ISO	RGD:735468	8554872	ClinVar Annotator: match by term: Focal facial dermal dysplasia 3, Setleis type	ClinVar	PMID:14069095\|PMID:20691403\|PMID:21931173\|PMID:8818454
Twist2	Squirrel	genetic disease		ISO	RGD:735468	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar	PMID:11038439\|PMID:11807864\|PMID:15103726\|PMID:2036354\|PMID:21595001\|PMID:25741868\|PMID:26119818\|PMID:8746822
Twist2	Squirrel	hereditary spastic paraplegia 30		ISO	RGD:735468	8554872	ClinVar Annotator: match by term: Hereditary spastic paraplegia 30	ClinVar	PMID:16081310\|PMID:20020533\|PMID:20691407\|PMID:21384162\|PMID:21820098\|PMID:24715439\|PMID:28492532\|PMID:30848064\|PMID:31488895
Twist2	Squirrel	intellectual disability		ISO	RGD:735468	8554872	ClinVar Annotator: match by term: Intellectual disability	ClinVar

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Twist2	Squirrel	Focal Facial Dermal Dysplasia		ISO	RGD:735468	9068941	CTD Direct Evidence: marker/mechanism	CTD

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Twist2	Squirrel	ablepharon macrostomia syndrome		ISO	RGD:735468	7240710		OMIM
Twist2	Squirrel	Barber-Say syndrome		ISO	RGD:735468	7240710		OMIM
Twist2	Squirrel	Focal Facial Dermal Dysplasia 3		ISO	RGD:735468	7240710		OMIM

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Twist2	Squirrel	cell population proliferation	acts_upstream_of	ISO	MGI:3044412	9068941	PMID:19090621	MGI	PMID:19090621
Twist2	Squirrel	cornea development in camera-type eye	acts_upstream_of_or_within	ISO	MGI:3044412	9068941	PMID:20574024	MGI	PMID:20574024
Twist2	Squirrel	developmental process	involved_in	IEA	PANTHER:PTN000598549	150520179		TreeGrafter	GO_REF:0000118
Twist2	Squirrel	embryonic cranial skeleton morphogenesis	acts_upstream_of_or_within	ISO	MGI:99829	9068941	PMID:15030764	MGI	PMID:15030764
Twist2	Squirrel	face morphogenesis	acts_upstream_of_or_within	ISO	MGI:3044412	9068941	PMID:20574024, PMID:20691403	MGI	PMID:20574024\|PMID:20691403
Twist2	Squirrel	keratinocyte proliferation	acts_upstream_of	ISO	MGI:3044412	9068941	PMID:20574024	MGI	PMID:20574024
Twist2	Squirrel	myeloid cell differentiation	acts_upstream_of	ISO	MGI:3044412	9068941	PMID:19090621	MGI	PMID:19090621
Twist2	Squirrel	negative regulation of apoptotic process		ISO	RGD:621286	9068941		RGD	PMID:10485844\|REF_RGD_ID:634726
Twist2	Squirrel	negative regulation of cell population proliferation	acts_upstream_of_or_within	ISO	MGI:3044412	9068941	PMID:19090621	MGI	PMID:19090621
Twist2	Squirrel	negative regulation of DNA-templated transcription	involved_in	ISO	RGD:735469	9068941	PMID:7589808	UniProt	PMID:7589808
Twist2	Squirrel	negative regulation of macrophage cytokine production	acts_upstream_of_or_within	ISO	MGI:98872	9068941	PMID:16831897	MGI	PMID:16831897
Twist2	Squirrel	negative regulation of macrophage cytokine production	acts_upstream_of_or_within	ISO	MGI:3044412	9068941	PMID:16831897	MGI	PMID:16831897
Twist2	Squirrel	negative regulation of myeloid cell differentiation	acts_upstream_of_or_within	ISO	MGI:3044412	9068941	PMID:19090621	MGI	PMID:19090621
Twist2	Squirrel	negative regulation of osteoblast differentiation	involved_in	IEA	UniProtKB:Q8WVJ9\|ensembl:ENSP00000482581	150520179		Ensembl	GO_REF:0000107
Twist2	Squirrel	negative regulation of osteoblast differentiation	acts_upstream_of_or_within	ISO	MGI:3044412	9068941	PMID:15030764	MGI	PMID:15030764
Twist2	Squirrel	negative regulation of transcription by RNA polymerase II	acts_upstream_of_or_within	ISO	MGI:107606\|MGI:108086	9068941	PMID:14654692	MGI	PMID:14654692
Twist2	Squirrel	negative regulation of transcription by RNA polymerase II	acts_upstream_of_or_within	ISO	MGI:99480\|MGI:99852	9068941	PMID:19090621	MGI	PMID:19090621
Twist2	Squirrel	negative regulation of transcription by RNA polymerase II	acts_upstream_of_or_within	ISO	RGD:735469	9068941	PMID:16831897	MGI	PMID:16831897
Twist2	Squirrel	negative regulation of tumor necrosis factor production	acts_upstream_of_or_within	ISO	MGI:98872	9068941	PMID:16831897	MGI	PMID:16831897
Twist2	Squirrel	negative regulation of tumor necrosis factor production	acts_upstream_of_or_within	ISO	MGI:3044412	9068941	PMID:16831897	MGI	PMID:16831897
Twist2	Squirrel	osteoblast differentiation	acts_upstream_of_or_within	ISO	MGI:3044412	9068941	PMID:15030764	MGI	PMID:15030764
Twist2	Squirrel	positive regulation of cell migration	involved_in	IEA	UniProtKB:Q8WVJ9\|ensembl:ENSP00000482581	150520179		Ensembl	GO_REF:0000107
Twist2	Squirrel	positive regulation of keratinocyte proliferation	acts_upstream_of_or_within	ISO	MGI:3044412	9068941	PMID:20574024	MGI	PMID:20574024
Twist2	Squirrel	regulation of transcription by RNA polymerase II	involved_in	IEA	PANTHER:PTN000598549	150520179		TreeGrafter	GO_REF:0000118
Twist2	Squirrel	regulation of transcription by RNA polymerase II	acts_upstream_of_or_within	ISO	RGD:735469	9068941	PMID:7589808	MGI	PMID:7589808
Twist2	Squirrel	response to insulin		ISO	RGD:621286	9068941		RGD	PMID:20818503\|REF_RGD_ID:151667419

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Twist2	Squirrel	cytoplasm	located_in	IEA	UniProtKB:Q8WVJ9\|ensembl:ENSP00000482581	150520179		Ensembl	GO_REF:0000107
Twist2	Squirrel	nucleolus	located_in	IEA	UniProtKB:Q8WVJ9\|ensembl:ENSP00000482581	150520179		Ensembl	GO_REF:0000107
Twist2	Squirrel	nucleoplasm	located_in	IEA	UniProtKB:Q8WVJ9\|ensembl:ENSP00000482581	150520179		Ensembl	GO_REF:0000107
Twist2	Squirrel	nucleus	located_in	IEA	UniProtKB:Q8WVJ9\|ensembl:ENSP00000482581	150520179		Ensembl	GO_REF:0000107
Twist2	Squirrel	transcription regulator complex	part_of	ISO	PR:P15806	9068941	PMID:7589808	MGI	PMID:7589808

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Twist2	Squirrel	chromatin binding	enables	ISO	RGD:735469	9068941	PMID:16831897	MGI	PMID:16831897
Twist2	Squirrel	DNA-binding transcription factor activity	enables	ISO	RGD:735469	9068941	PMID:7589808	MGI	PMID:7589808
Twist2	Squirrel	DNA-binding transcription factor activity, RNA polymerase II-specific	enables	IEA	PANTHER:PTN000598549	150520179		TreeGrafter	GO_REF:0000118
Twist2	Squirrel	protein binding	enables	ISO	UniProtKB:A0A6Q8PF08\|UniProtKB:P01023\|UniProtKB:P37840\|UniProtKB:P42858\|UniProtKB:P54253\|UniProtKB:Q14203-5\|UniProtKB:Q9UBB4	9068941	PMID:32814053	IntAct	PMID:32814053
Twist2	Squirrel	protein binding	enables	ISO	PR:Q9WTN3	9068941	PMID:14654692	MGI	PMID:14654692
Twist2	Squirrel	protein binding	enables	ISO	UniProtKB:P15923-3\|UniProtKB:Q99081-3\|UniProtKB:Q9BZE0	9068941	PMID:32296183	IntAct	PMID:32296183
Twist2	Squirrel	protein binding	enables	ISO	UniProtKB:P15884	9068941	PMID:28514442	IntAct	PMID:28514442
Twist2	Squirrel	protein binding	enables	ISO	PR:Q03347	9068941	PMID:19090621	MGI	PMID:19090621
Twist2	Squirrel	protein binding	enables	ISO	UniProtKB:Q08775	9068941	PMID:20655471	IntAct	PMID:20655471
Twist2	Squirrel	protein binding	enables	ISO	UniProtKB:P15884\|UniProtKB:Q99081	9068941	PMID:25416956, PMID:33961781	IntAct	PMID:25416956\|PMID:33961781
Twist2	Squirrel	protein binding	enables	ISO	UniProtKB:P15036	9068941	PMID:18598946	IntAct	PMID:18598946
Twist2	Squirrel	protein binding	enables	ISO	UniProtKB:Q9BSQ5	9068941	PMID:25814554	IntAct	PMID:25814554
Twist2	Squirrel	protein dimerization activity	enables	IEA	InterPro:IPR011598\|InterPro:IPR036638	150520179		InterPro	GO_REF:0000002
Twist2	Squirrel	protein domain specific binding	enables	ISO	PR:Q08775	9068941	PMID:15030764	MGI	PMID:15030764
Twist2	Squirrel	RNA polymerase II transcription regulatory region sequence-specific DNA binding	enables	IEA	PANTHER:PTN000598549	150520179		TreeGrafter	GO_REF:0000118
Twist2	Squirrel	RNA polymerase II transcription regulatory region sequence-specific DNA binding	enables	IEA	InterPro:IPR047094	150520179		InterPro	GO_REF:0000002

PMID:22301074	PMID:30032202

Twist2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	191,151,472 - 191,191,746 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936745	2,028,286 - 2,067,948 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936745	2,067,272 - 2,067,948 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TWIST2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	238,848,085 - 238,910,534 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	238,848,032 - 238,910,534 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	239,756,726 - 239,832,230 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	239,496,916 - 239,497,176 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	239,568,232 - 239,568,491	NCBI
Celera	2	233,470,842 - 233,508,585 (+)	NCBI		Celera
Cytogenetic Map	2	q37.3	NCBI
HuRef	2	231,547,793 - 231,586,033 (+)	NCBI		HuRef
HuRef	2	231,602,511 - 231,603,214 (+)	NCBI		HuRef
CHM1_1	2	239,838,012 - 239,838,268 (+)	NCBI		CHM1_1
CHM1_1	2	239,763,040 - 239,801,929 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	239,335,184 - 239,402,179 (+)	NCBI		T2T-CHM13v2.0

Twist2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	91,729,183 - 91,775,756 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	91,729,183 - 91,775,750 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	91,801,461 - 91,848,034 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	91,801,461 - 91,848,028 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	93,698,054 - 93,744,604 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	93,631,883 - 93,678,433 (+)	NCBI		MGSCv36	mm8
Celera	1	94,738,169 - 94,784,976 (+)	NCBI		Celera
Cytogenetic Map	1	D	NCBI
cM Map	1	46.24	NCBI

Twist2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	99,822,242 - 99,866,722 (+)	NCBI		GRCr8
mRatBN7.2	9	92,374,740 - 92,419,222 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	92,374,574 - 92,419,222 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	100,809,039 - 100,853,482 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	105,944,804 - 105,989,247 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	104,302,463 - 104,346,934 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	98,924,134 - 98,968,510 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	98,924,134 - 98,968,510 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	98,599,201 - 98,642,827 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	91,016,450 - 91,058,863 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	91,221,218 - 91,263,067 (+)	NCBI
Celera	9	89,915,377 - 89,958,630 (+)	NCBI		Celera
Cytogenetic Map	9	q36	NCBI

Twist2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955542	1,959,765 - 2,000,665 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955542	1,959,765 - 2,000,665 (-)	NCBI	ChiLan1.0	ChiLan1.0

TWIST2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	141,482,546 - 141,549,418 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	141,499,450 - 141,564,099 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	126,080,684 - 126,143,677 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	244,921,429 - 244,982,136 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

TWIST2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	49,165,450 - 49,216,545 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	49,165,641 - 49,166,123 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	49,660,979 - 49,712,121 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	49,552,697 - 49,603,842 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	49,552,774 - 49,553,256 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	49,426,770 - 49,477,881 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	49,215,467 - 49,266,628 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	49,447,550 - 49,498,775 (+)	NCBI		UU_Cfam_GSD_1.0

TWIST2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	138,228,807 - 138,229,289 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	138,228,640 - 138,276,341 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	152,586,205 - 152,633,994 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TWIST2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	124,889,954 - 124,953,135 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	124,890,134 - 124,890,613 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	74,468,298 - 74,529,773 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Twist2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624847	3,730,291 - 3,773,773 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624847	3,730,126 - 3,774,338 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_021719641	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005725937	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000004618 ⟹ ENSSTOP00000004144

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936745	2,028,286 - 2,067,948 (-)	Ensembl

RefSeq Acc Id:

XM_021719641 ⟹ XP_021575316

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	191,151,472 - 191,191,746 (+)	NCBI
SpeTri2.0	NW_004936745	2,067,272 - 2,067,948 (-)	NCBI

Sequence:

show sequence

TTTCCAAAAAAGTTAGAATAACTTCCTCTCCCGGAGACCTCGGTTTTGCACAAACCGGCCCGTAACCAGAGCCTTTCCAGCAACCCGAGAGCGTGTGCTCGGCGGCCGCGGGCTTGGCCAGCGGCGCG
CGGCGCCTCCAGCCCCACGCGCGCCGGGCGGGCGTCATGGAGGAGGGCTCCAGCTCGCCCGTGTCCCCCGTGGACAGCTTGGGCACCAGCGAGGAGGAGCTCGAGCGGCAGCCCAAGCGCTTCGGCCG
GAAGCGGCGCTACAGCAAGAAGTCAAGCGAAGATGGCAGCCCGACCCCGGGCAAGCGCGGCAAGAAGGGCAGCCCGAGCGCGCAGTCCTTCGAGGAGCTCCAGAGCCAGCGCATCCTGGCCAACGTGC
GCGAGCGCCAGCGCACCCAGTCGCTCAATGAGGCCTTCGCTGCACTGCGCAAGATCATCCCCACGCTGCCCTCGGACAAGCTCAGCAAGATCCAGACGCTCAAGCTGGCCGCCAGGTACATAGACTTC
CTCTACCAGGTCCTGCAGAGCGACGAGATGGACAATAAGATGACCAGCTGCAGCTACGTGGCCCACGAGCGCCTCAGCTACGCCTTCTCCGTGTGGCGCATGGAAGGCGCGTGGTCCATGTCCGCCTC
CCACTAGCGCCGCGCCACCCACCTCCGGACCGGCGCA

hide sequence

RefSeq Acc Id:

XR_005725937

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	191,151,472 - 191,191,746 (+)	NCBI


Protein RefSeqs	XP_021575316	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000004144.1
GenBank Protein	KAG3275661	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_021575316 ⟸ XM_021719641
- UniProtKB:	I3M4K6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEEGSSSPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQSFEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDEMDN KMTSCSYVAHERLSYAFSVWRMEGAWSMSASH hide sequence

Ensembl Acc Id:

ENSSTOP00000004144 ⟸ ENSSTOT00000004618

Protein Domains

bHLH

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000004633	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000004618.2	UniProtKB/TrEMBL
Gene3D-CATH	4.10.280.10	UniProtKB/TrEMBL
InterPro	bHLH_dom	UniProtKB/TrEMBL
	E-box_TF_Regulators	UniProtKB/TrEMBL
	HLH_DNA-bd_sf	UniProtKB/TrEMBL
	Twist2_bHLH	UniProtKB/TrEMBL
NCBI Gene	Twist2	ENTREZGENE
PANTHER	BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST	UniProtKB/TrEMBL
	PTHR23349:SF70	UniProtKB/TrEMBL
Pfam	HLH	UniProtKB/TrEMBL
PROSITE	BHLH	UniProtKB/TrEMBL
SMART	HLH	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47459	UniProtKB/TrEMBL
UniProt	I3M4K6	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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