Twist2 (twist family bHLH transcription factor 2) - Rat Genome Database

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Gene: Twist2 (twist family bHLH transcription factor 2) Heterocephalus glaber
Analyze
Symbol: Twist2
Name: twist family bHLH transcription factor 2
RGD ID: 18904062
Description: ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription factor activity (ortholog); protein domain specific binding (ortholog); INVOLVED IN cell population proliferation (ortholog); cornea development in camera-type eye (ortholog); embryonic cranial skeleton morphogenesis (ortholog); ASSOCIATED WITH ablepharon macrostomia syndrome (ortholog); Barber-Say syndrome (ortholog); Bethlem Myopathy 1A (ortholog); FOUND IN cytoplasm (ortholog); nucleolus (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: twist basic helix-loop-helix transcription factor 2; twist-related protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248473,730,291 - 3,773,773 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248473,730,126 - 3,774,338 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Twist2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248473,730,291 - 3,773,773 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248473,730,126 - 3,774,338 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TWIST2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382238,848,085 - 238,910,534 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2238,848,032 - 238,910,534 (+)EnsemblGRCh38hg38GRCh38
GRCh372239,756,726 - 239,832,230 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362239,496,916 - 239,497,176 (+)NCBINCBI36Build 36hg18NCBI36
Build 342239,568,232 - 239,568,491NCBI
Celera2233,470,842 - 233,508,585 (+)NCBICelera
Cytogenetic Map2q37.3NCBI
HuRef2231,547,793 - 231,586,033 (+)NCBIHuRef
HuRef2231,602,511 - 231,603,214 (+)NCBIHuRef
CHM1_12239,838,012 - 239,838,268 (+)NCBICHM1_1
CHM1_12239,763,040 - 239,801,929 (+)NCBICHM1_1
T2T-CHM13v2.02239,335,184 - 239,402,179 (+)NCBIT2T-CHM13v2.0
Twist2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39191,729,183 - 91,775,756 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl191,729,183 - 91,775,750 (+)EnsemblGRCm39 Ensembl
GRCm38191,801,461 - 91,848,034 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl191,801,461 - 91,848,028 (+)EnsemblGRCm38mm10GRCm38
MGSCv37193,698,054 - 93,744,604 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36193,631,883 - 93,678,433 (+)NCBIMGSCv36mm8
Celera194,738,169 - 94,784,976 (+)NCBICelera
Cytogenetic Map1DNCBI
cM Map146.24NCBI
Twist2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8999,822,242 - 99,866,722 (+)NCBIGRCr8
mRatBN7.2992,374,740 - 92,419,222 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl992,374,574 - 92,419,222 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9100,809,039 - 100,853,482 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09105,944,804 - 105,989,247 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09104,302,463 - 104,346,934 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0998,924,134 - 98,968,510 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl998,924,134 - 98,968,510 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0998,599,201 - 98,642,827 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4991,016,450 - 91,058,863 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1991,221,218 - 91,263,067 (+)NCBI
Celera989,915,377 - 89,958,630 (+)NCBICelera
Cytogenetic Map9q36NCBI
Twist2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555421,959,765 - 2,000,665 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555421,959,765 - 2,000,665 (-)NCBIChiLan1.0ChiLan1.0
TWIST2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213141,482,546 - 141,549,418 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B141,499,450 - 141,564,099 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B126,080,684 - 126,143,677 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B244,921,429 - 244,982,136 (+)NCBIpanpan1.1PanPan1.1panPan2
TWIST2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12549,165,450 - 49,216,545 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2549,165,641 - 49,166,123 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2549,660,979 - 49,712,121 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02549,552,697 - 49,603,842 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2549,552,774 - 49,553,256 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12549,426,770 - 49,477,881 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02549,215,467 - 49,266,628 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02549,447,550 - 49,498,775 (+)NCBIUU_Cfam_GSD_1.0
Twist2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303191,151,472 - 191,191,746 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367452,028,286 - 2,067,948 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367452,067,272 - 2,067,948 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TWIST2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15138,228,807 - 138,229,289 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115138,228,640 - 138,276,341 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215152,586,205 - 152,633,994 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TWIST2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110124,889,954 - 124,953,135 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10124,890,134 - 124,890,613 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604074,468,298 - 74,529,773 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000026955   ⟹   ENSHGLP00000026717
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248473,730,291 - 3,773,773 (+)Ensembl
RefSeq Acc Id: XM_004868415   ⟹   XP_004868472
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248473,730,133 - 3,773,795 (+)NCBI
RefSeq Acc Id: XM_021247384   ⟹   XP_021103043
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248473,730,126 - 3,774,338 (+)NCBI
RefSeq Acc Id: XM_021247385   ⟹   XP_021103044
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248473,730,132 - 3,746,584 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004868472 (Get FASTA)   NCBI Sequence Viewer  
  XP_021103043 (Get FASTA)   NCBI Sequence Viewer  
  XP_021103044 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000026717
Reference Protein Sequences
RefSeq Acc Id: XP_021103043   ⟸   XM_021247384
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021103044   ⟸   XM_021247385
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004868472   ⟸   XM_004868415
- Peptide Label: isoform X2
RefSeq Acc Id: ENSHGLP00000026717   ⟸   ENSHGLT00000026955


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000019006 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000026955 ENTREZGENE
NCBI Gene Twist2 ENTREZGENE