LOC101965492 (poliovirus receptor homolog) - Rat Genome Database

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Pathways
Gene: LOC101965492 (poliovirus receptor homolog) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101965492 (Ensembl: PVR)
Name: poliovirus receptor homolog (Ensembl:PVR cell adhesion molecule)
RGD ID: 12587642
Description: ENCODES a protein that exhibits receptor ligand activity (ortholog); virus receptor activity (ortholog); INVOLVED IN natural killer cell mediated cytotoxicity (ortholog); negative regulation of natural killer cell mediated cytotoxicity (ortholog); positive regulation of natural killer cell mediated cytotoxicity (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); Breast Cancer, Familial (ortholog); cervical cancer (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: poliovirus receptor; Pvr; PVR cell adhesion molecule
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: mIctTri1.hap1 - mIctTri1.hap1 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap11511,086,338 - 11,099,267 (-)NCBImIctTri1.hap1
HiC_Itri_2NW_02440934917,009,613 - 17,022,236 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367061,357,041 - 1,370,442 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367061,356,690 - 1,369,547 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0



References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC101965492
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap11511,086,338 - 11,099,267 (-)NCBImIctTri1.hap1
HiC_Itri_2NW_02440934917,009,613 - 17,022,236 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367061,357,041 - 1,370,442 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367061,356,690 - 1,369,547 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PVR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381944,643,910 - 44,666,162 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1944,643,798 - 44,666,162 (+)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh371945,147,210 - 45,169,430 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361949,839,066 - 49,858,690 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341949,839,065 - 49,858,689NCBI
Celera1941,951,144 - 41,973,471 (+)NCBICelera
Cytogenetic Map19q13.31NCBI
HuRef1941,579,341 - 41,601,754 (+)NCBIHuRef
CHM1_11945,149,748 - 45,172,111 (+)NCBICHM1_1
T2T-CHM13v2.01947,468,632 - 47,490,944 (+)NCBIT2T-CHM13v2.0
Pvr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39719,637,503 - 19,655,068 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl719,637,503 - 19,655,085 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38719,903,578 - 19,921,143 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl719,903,578 - 19,921,160 (-)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv37720,488,927 - 20,506,492 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36719,062,100 - 19,079,613 (-)NCBIMGSCv36mm8
Celera717,310,717 - 17,327,912 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map79.95NCBI
Pvr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8188,689,235 - 88,704,641 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl188,688,981 - 88,704,630 (-)EnsemblGRCr8
mRatBN7.2179,561,294 - 79,576,700 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,546,879 - 79,576,715 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx184,955,696 - 84,971,120 (-)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0193,505,836 - 93,521,203 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0186,710,813 - 86,726,237 (-)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd187,309,091 - 87,324,496 (-)NCBI
Lyon_Normotensive192,446,080 - 92,461,485 (-)NCBI
Lyon_Hypertensive188,985,984 - 89,001,417 (-)NCBI
F344_StmMcwi187,434,705 - 87,450,106 (-)NCBI
Rnor_6.0180,820,306 - 80,835,712 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl180,820,050 - 80,835,701 (-)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.0182,085,555 - 82,100,961 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4179,213,654 - 79,229,063 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera174,018,461 - 74,033,867 (-)NCBICelera
RGSC_v3.1179,291,499 - 79,307,163 (-)NCBI
RH 3.4 Map1819.8RGD
Cytogenetic Map1q21NCBI
PVR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22050,803,497 - 50,823,257 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11952,675,478 - 52,695,282 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01941,592,042 - 41,614,397 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11950,196,980 - 50,216,832 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1950,196,980 - 50,217,006 (+)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
PVR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11110,692,906 - 110,713,209 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1110,697,911 - 110,754,296 (-)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1110,175,812 - 110,196,115 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01111,257,096 - 111,277,399 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1111,261,295 - 111,277,390 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11110,898,742 - 110,919,041 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01110,534,429 - 110,554,736 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01111,404,145 - 111,424,445 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
PVR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1651,161,320 - 51,178,464 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2647,020,048 - 47,038,024 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PVR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap1613,211,272 - 13,232,545 (-)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_023667612773 - 12,781 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.1638,127,864 - 38,141,612 (+)NCBIChlSab1.1ChlSab1.1chlSab2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000039461   ⟹   ENSSTOP00000027133
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367061,357,041 - 1,370,442 (+)Ensembl
RefSeq Acc Id: XM_005338198   ⟹   XP_005338255
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
mIctTri1.hap11511,086,338 - 11,099,267 (-)NCBI
HiC_Itri_2NW_02440934917,009,613 - 17,022,236 (+)NCBI
SpeTri2.0NW_0049367061,356,690 - 1,369,547 (+)NCBI
Sequence:
RefSeq Acc Id: XM_078031916   ⟹   XP_077888042
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
mIctTri1.hap11511,086,338 - 11,099,267 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005338255 (Get FASTA)   NCBI Sequence Viewer  
  XP_077888042 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000027133.1
GenBank Protein KAG3256219 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005338255   ⟸   XM_005338198
- Peptide Label: isoform X1
- UniProtKB: A0A287D0N4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000027133   ⟸   ENSSTOT00000039461
RefSeq Acc Id: XP_077888042   ⟸   XM_078031916
- Peptide Label: isoform X2
- UniProtKB: A0A287D0N4 (UniProtKB/TrEMBL)
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000033231 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000039461.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro CD80_C2-set UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
  Nectin/PVR UniProtKB/TrEMBL
KEGG Report iti:101965492 UniProtKB/TrEMBL
NCBI Gene LOC101965492 ENTREZGENE
PANTHER NECTIN-2 UniProtKB/TrEMBL
  PVR CELL ADHESION MOLECULE UniProtKB/TrEMBL
Pfam C2-set_2 UniProtKB/TrEMBL
  V-set UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGv UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A287D0N4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2025-12-16 LOC101965492  poliovirus receptor homolog  Pvr  PVR cell adhesion molecule  Symbol and/or name change 5135510 APPROVED
2021-03-26 Pvr  PVR cell adhesion molecule  LOC101965492  poliovirus receptor homolog  Symbol and/or name change 5135510 APPROVED