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Gene: Tro (trophinin) Ictidomys tridecemlineatus

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Symbol:

Tro

Name:

trophinin

RGD ID:

12577575

Description:

INVOLVED IN negative regulation of cell growth (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); Cornelia de Lange syndrome 2 (ortholog); FOUND IN cytoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

LOC101976785; trophinin, transcript variant X1; trophinin, transcript variant X2; trophinin, transcript variant X3; trophinin, transcript variant X4; trophinin, transcript variant X5

RGD Orthologs

Alliance Orthologs

More Info

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More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TRO (trophinin)	NCBI	Ortholog
Mus musculus (house mouse):	Tro (trophinin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Tro (trophinin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tro (trophinin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TRO (trophinin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TRO (trophinin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TRO (trophinin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LOC103232030 (trophinin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tro (trophinin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	39,400,999 - 39,412,531 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936751	1,740,804 - 1,752,256 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

autosomal hemophilia A (ISO)

Cornelia de Lange syndrome 2 (ISO)

factor VIII deficiency (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of cell growth (ISO)

negative regulation of transcription by RNA polymerase II (IEA)

Cellular Component

cytoplasm (ISO)

nucleus (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Tro
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	39,400,999 - 39,412,531 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936751	1,740,804 - 1,752,256 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TRO
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	54,920,824 - 54,931,431 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	54,920,462 - 54,931,431 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	54,947,257 - 54,957,864 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	54,963,974 - 54,974,589 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	X	58,782,397 - 58,793,012 (+)	NCBI		Celera
Cytogenetic Map	X	p11.21	NCBI
HuRef	X	51,998,723 - 52,009,749 (+)	NCBI		HuRef
CHM1_1	X	54,937,045 - 54,947,913 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	54,213,910 - 54,224,559 (+)	NCBI		T2T-CHM13v2.0

Tro
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	149,427,706 - 149,440,579 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	149,428,300 - 149,440,579 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	150,644,710 - 150,657,583 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	150,645,304 - 150,657,583 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	147,079,846 - 147,091,979 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	145,986,019 - 145,998,115 (-)	NCBI		MGSCv36	mm8
Celera	X	133,755,638 - 133,767,712 (+)	NCBI		Celera
Cytogenetic Map	X	F3	NCBI
cM Map	X	68.46	NCBI

Tro
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	22,990,922 - 23,001,955 (-)	NCBI		GRCr8
mRatBN7.2	X	19,563,395 - 19,574,507 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	19,563,517 - 19,572,953 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	X	23,079,809 - 23,090,912 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	X	23,502,729 - 23,511,435 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	X	19,834,549 - 19,843,753 (-)	NCBI		Celera
Cytogenetic Map	X	q12	NCBI

Tro
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955475	2,266,522 - 2,278,016 (+)	NCBI	ChiLan1.0	ChiLan1.0

TRO
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	56,316,789 - 56,327,602 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	56,320,457 - 56,331,209 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	47,131,249 - 47,142,012 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	55,362,063 - 55,373,560 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	55,363,522 - 55,373,467 (+)	Ensembl	panpan1.1		panPan2

TRO
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	46,566,844 - 46,617,430 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	37,942,110 - 37,951,258 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	46,895,135 - 46,904,283 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	X	46,404,891 - 46,414,038 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	46,871,465 - 46,880,614 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	46,813,740 - 46,822,888 (+)	NCBI		UU_Cfam_GSD_1.0

TRO
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	47,759,334 - 47,772,014 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	47,759,334 - 47,772,014 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	53,700,769 - 53,708,135 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LOC103232030
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	51,001,421 - 51,015,299 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	51,005,208 - 51,013,942 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666086	4,976,998 - 4,989,915 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tro
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624910	291,559 - 303,561 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624910	291,820 - 303,686 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021719776	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021719777	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021719778	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021719779	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021719780	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040281338	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_021719776 ⟹ XP_021575451

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	X	39,400,999 - 39,412,531 (+)	NCBI
SpeTri2.0	NW_004936751	1,740,804 - 1,752,256 (+)	NCBI

Sequence:

show sequence

CGGGGGGACTGGCTCAGACCTAAGGAGAGGCTTGGAGAGAGCAGACGCTTTCTGGACTCCAGAG
GACGAGCCTATTTCTCTCAGGCTCAGCTTTTACTTGGCTTTCCAGAAAGATGGATAGAAGAAAT
GACTATGGTTATAGAACAACGGTGTTCCAGGGCCCTCTGCCTCCCTCTGGGAGCCTGGGGCTTC
CCTTCCCTCCAGATGTAGAGACCGAGACCACAGAAGAGGACAGTGTCTTGCTGATGCATACCCT
GTTGGCGGCAACCAAGGACCCACCTGTTGCCAACCGACCTAAGAAAAGCAAGACCAAGAAGACT
TCTCTTAAGGCTGTTACTAAGTCTGCACCTGCTGCCTCTCCAGTCCCAACTGCCAATGAGATTG
CCACCAACAAGCCCAAAATAACTTTACAGGCTTTAAACTTGCCCATGCTCACTCAGATCAGCCA
GTCTTCAGCTACTACTGAGGTAGCCAATATTCAGGCTTCTTCAGTCACTGTTCAGCCTAAGAAA
GCCAACAAGACAAAGAGAGTTTCTGCCAAGGTAGCTCAAGGCTCCCAGTCCCCAACTGGGAGTG
AGGGTGTTACTACCCAACTCAAGTCACCCTTGCAGACCCTAAACCTACCAGTGATTTCACAGAC
AATCCAGGTTCCAGTTGCCAGTGAGTCAGCCAGTTCCTTGGCCTTGATAGTCTCTACCAAGCCT
AAGAAAGCTTCCAAGGCCAAGAAGGCTGCCAATAAGACCATAGCTAGTGCCACTGAAATCTTAC
CAGCTCCAACTACTATCCACATAGCTACTACCCAAGGCCAAATTACCAGTGAGACAGCCAATAT
CCAAGCTACAGCAGCCTCTATCAGAACCAAGAAAGCTCCCAAGGCCAAGAAGACAACTGCTAAG
GCCCCAAATACTGACACAGAACATCTAGAGTCTCCAAATTCTACTGAGGCAGTGAGCAGGCAGA
TTGAGGCCACAGCAGCAGTTCTCCGGCCCAAAAAGCCCAAAGGAAAGAAGATTGTCAATAAAGG
CCCAAATTCTGCCTCTGAGATCACTGAGGCTCCACCCACCACTCAGATGGTTACAAACCAAACC
ATAGTAGCTACTATTCGAGTCAAGAGAGGGTCTAGGGCTCGAAAGGCTGGCACTAAGGCTCGGG
TAACTGAAAGCCAGACTCCAGTTGCTGACCAGGGGGCTCAGGTGAAGATGGCTGCCTCTCAGAC
CAGCATAAGCGCCCTTGAGACTCAGGTTGCTGCTGCTGTCCAGGCCCTGGCAGATGACTATTTG
GCTCAGTTGAGTCTGGAGCCCACAACTAGGACCCGGGGCAAGAGAAACCGAAAGTCCAAACATC
CAAATGGGGATGAGAGAAGTGGCAGTAATTATAGGCGGATCCCATGGGGCCGGAGGCCTACGCC
ACCACGAGATGTGGCCATTTTGCAAGAAAGGGCAAATAAATTGGTGAAATACCTGTTGGTTAAG
GATCAAACAAAGATCCCCATAAAGCGCTCAGACATGCTGAAGGATGTCATCCAAGAATATGATG
AATATTTCCCAGAGATCATTGAACGAGCAAGCTACGCTCTGGAAAAGATGTTTCGAGTCAATCT
GAAGGAAATCGATAAGCAAAGTAGCTTGTATATTCTGATCAGCACTCAGGAATCCTCTGCAGGC
ATACTGGGAACGACCAAGGATACACCCAAGCTGGGTCTCCTCATGGTGATTCTGAGTGTCATTT
TTATGAATGGCAACAAGGCCAGTGAGGCTGTCATCTGGGAGGTGCTGCGCAAGTTGGGGCTACG
CCCTGGGGTGAGACATTCACTTTTTGGGGAAGTGAGGAAGCTCATCACAGACGAATTTGTGAAG
CAAAAGTACCTGGAGTATAAGAGGGTCCCCAACAGCAGACCACCTGAGTATGAGTTCTTCTGGG
GCCTGCGCTCTTACCATGAGACTAGCAAGATGAAAGTCCTCAAGTTTGCATGCAAGGTGCAGAA
GAAAGACCCCAAAGACTGGGCTGCTCAGTATCGGGAGGCAGTGGAGATGGAAGTCCAAGCTGCA
GCTGTGGCTGTGGCTGAGGCTGAGGCCAGGGCTGAGGCAAGAGCCCAAATGGGGATTGGAGAGG
AAGCTGTGGCTGGGCCTTGGAATTGGGATGACATGGATATCGACTGCCTAACAAGGGAAGAATT
AGGTGATGATGCTCAGGCCTGGAGCAGATTTTCATTTGAAATTGAGGCGAGAGCCCAAGAAAAT
GCAGATGCCACCACCAATGTCAACTTCAACCGAGGAACTAGCACCAGGGGTGGTTTCAGTGATG
GTGCTAGTGTTAGCTTTAATGGTGCACCCGGCCCCAGTGATGGCTTTGGTGGTGGAGCTGGTAT
TACCTTCGGAGGTGCACCTAGCACCAGTGCTAGCTTCAGCAATGCAGCCAGCATTAGCTTTGGT
GGCACATCCAGTACCAGTGCCAGTTTCAGCAGTGCAGCCAGCATTAGCTTTGGTGGTGCACCCA
GCACTAACACTAGTTTCAGCGGTGGAGCCAGCATTAGCTTTGGTGGTGCACCCAGTACCAGTGC
CAGCTTCTGCAGCACAGCCAGCATTAGCTTTGGTGGCACACCTAACACTATTACTAGTTTCAGT
GGAGGAGCCAGCATTAGCTTTGGTGGTGCACCCAGCACTAGCACTAGTTTCAGCAGCACAGCCA
GCATTAGTTTTGGTGGTGCACCCAGCACAAGCACCAGCTTTAGTGGAGGAGCCTGCATTAGCTT
TGGTGGTGCACCCAGCATCGGCACCAGCTTTAGTGGGGGAGCCAGCATTAGCTTTGGTGGTGCA
CCTGGCACCGGCACTAGTTACAGTGGTGGAGCCAGCATCAGTTTTGGTGGTGCACCTTGTACAA
GTGCCAGTTTCAGTGGTGGAGCCAGCTCTGGCTTTGGAGGCACGCTCAGCAGCACCACAGCTGG
CTTTAGCAGTGCACTTAGCACTAGCACCAGCTTTGGCAGTACACCCACCACAAGCACTGTCTTC
ACTGGCGCACTTAGCACCAGCACTGGCTTTGGAGGCACACTTAGCACCAGTGTATGTTTTGGTG
GCTCTCCAAGTTCTGGTTCCAGCTTTGGTGGCACACTCAGTACTAGTATCTGTTTCGGTGGCTC
TCCTAGCACCAGCACTGGTTTTGGTGGTACACTAAGCACCAGTGTCTCCTTTGGTGGCTCTTCT
ATCACCAGTCCTGACTTTGGAGGTACACTAAGCACCAGTGTCTGCTTTGGTGGCTCTCCTAGTA
CCAGTGCCAGCTTTGGTGGTGCACTTAATAGCAGTGCTGGCTTTGGCGGTGCCATCAGCACCAG
TGCCGGCTTTGGTGATGCCATCAGCACCAGTGCCAACTTTGGCAGTGCACTTAACAGCAGTGCT
GGCTTTGGCAGTGCCATCAGCACCAGCTCCAGCTTCGGTGGTGCACTCAACAGCAATGCCAGCT
TCAGCAGTGCCATTGGCACCAGTGCTGGCTTTGGTGGTGCCATCAGCACCAATACTGGCTTTGG
CAGTACACTCAATAGCAGTGCCGGCTTTGGCAGTGTCATCAGCACCAGTGCCGGCTTTGGAGGT
GCACTCAGCAGCAGTGCCGGCTTTGGCAATGCCATGAGTACCAGTGCTGGCTTTGATGGTGCTG
TCAGTACTAGTGCTGGCTTCAGTGGTGCACCAAGCACCAACCCTGGCTTTGGTGGTGCATTCAG
CACCAGTGCTGGCTTCAGTGGGGCACTTAGTACCACTACTGACTTTGGCAGTACTCACAGCAAC
AGCATTGGCTTTGGCAGTGCTCCCAGCACCAGCGTCAGCTTTGGTGGTGCTCACAGCACCAGCC
TCTGTTTTGGTGGAGCTCCCAGCACCAGCCTCTGCTTTGGCAGTGCATCTAACACCAACCTATG
CTTTGGTGGCTCTCCTAGCACCAGTGCCTGCTTTAGTGGTGCCACCAGTGCCAGTTTTAGTGAT
GGACTCAGCACCAGTGCCGGTTTCAGCTTTGGTAATGGGTTAAGCACCAGTGCTGGATTTGGAG
GTGGACTGAGCACCAGTGCTGGCTTCGGTGGCAACCTAGGCACCAGTACTGGCTTCGGTGGCGG
CCTAGGCAGTGGCTCCGGCTTCGATGGTGGCCTAGGTACCAGTGCTGACTTTGGTGGCGGACTA
AGCACCAGCACTGGCTTCGGTGGCGGACTAGGCACTGGCACTGACTTTGATGGTGGACTAGGCA
CCGGCACTGGCTTTGGTGGTGGATTAGGTACCAGTGCTGGCTTCAGTGGCGGACTGGGTACCAG
CACTGGCTTTGGTGGCGAACTAGTCACCAGTGATGGCTTTGGTAGTGCACTGGGTACCAATGCT
GGTTTTGGCGGCACACTTGGCACTGGTGTGGGTTTTAGTGGTGGCCTCAGCACCAGCGATGGCT
TTGGCGGTGGGCCTAATGCCAGCTTTGACAGAGGACTGAGTACCATCATTGGCTTTGGCAGTGG
TTCCAACACCAGCACTGGCTTTACTGGCGAACCCAGCACCGGCACCAGCTTCAATAGTGGACCC
ACTTCTATTGTTGGCTTCAATAGTGGACCGAGCACTGGTGCTGGCTTCTGCAGTGGGCCAAGCA
CTGGTGGCTTTGGTGGTGGACTGAGCACTGGAGCTGGCTTTGGCGGACCGAGCACCGGAGCTGG
CTTCGGTGGTGGACTGGGCACCAGTACAGGCTTCGGTGGACCAAGCAGCAGTGCTGGCTTCGGT
GGTGGACCAAGCAGCAGTGCTGGATTCGGCGGTGGACCGAGCACCGGTTCTGGCTTTGGTGGTG
GACCTAATAGCCTTGGTGCCTGTGGCTTCTCCTACGGCTAATGAAGTTTCAGGTTTATTCCCCA
TGTTTACAGACACCACTAATAAATTGCAGCAGTCTTTCCCATGGAGCCAAGGTACAGCCTTGGA
ATCTTTGTCCACACAGCAATCCTAAGCAGCTACTACCAATCAGCTGAGGGTGACATGCTTTGAA
AAAAATCTGTTCGCTGTTCTTGCTTTCTTGTTTGCTTTCTGTGTGCTGTCATATTTTGGTATTA
GAGTTATTAAATTTGCAAAATGAA

hide sequence

RefSeq Acc Id:

XM_021719777 ⟹ XP_021575452

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	X	39,401,090 - 39,412,531 (+)	NCBI
SpeTri2.0	NW_004936751	1,740,880 - 1,752,256 (+)	NCBI

Sequence:

show sequence

TGAGGTGCCCAGCTTTAGTGAAGAACCCCTGGGGGCCTCTGGGCTGAGGCTTCAAGGCTCCTGA
CTCCATACAGCCTTAAGCCTATTTCTCTCAGGCTCAGCTTTTACTTGGCTTTCCAGAAAGATGG
ATAGAAGAAATGACTATGGTTATAGAACAACGGTGTTCCAGGGCCCTCTGCCTCCCTCTGGGAG
CCTGGGGCTTCCCTTCCCTCCAGATGTAGAGACCGAGACCACAGAAGAGGACAGTGTCTTGCTG
ATGCATACCCTGTTGGCGGCAACCAAGGACCCACCTGTTGCCAACCGACCTAAGAAAAGCAAGA
CCAAGAAGACTTCTCTTAAGGCTGTTACTAAGTCTGCACCTGCTGCCTCTCCAGTCCCAACTGC
CAATGAGATTGCCACCAACAAGCCCAAAATAACTTTACAGGCTTTAAACTTGCCCATGCTCACT
CAGATCAGCCAGTCTTCAGCTACTACTGAGGTAGCCAATATTCAGGCTTCTTCAGTCACTGTTC
AGCCTAAGAAAGCCAACAAGACAAAGAGAGTTTCTGCCAAGGTAGCTCAAGGCTCCCAGTCCCC
AACTGGGAGTGAGGGTGTTACTACCCAACTCAAGTCACCCTTGCAGACCCTAAACCTACCAGTG
ATTTCACAGACAATCCAGGTTCCAGTTGCCAGTGAGTCAGCCAGTTCCTTGGCCTTGATAGTCT
CTACCAAGCCTAAGAAAGCTTCCAAGGCCAAGAAGGCTGCCAATAAGACCATAGCTAGTGCCAC
TGAAATCTTACCAGCTCCAACTACTATCCACATAGCTACTACCCAAGGCCAAATTACCAGTGAG
ACAGCCAATATCCAAGCTACAGCAGCCTCTATCAGAACCAAGAAAGCTCCCAAGGCCAAGAAGA
CAACTGCTAAGGCCCCAAATACTGACACAGAACATCTAGAGTCTCCAAATTCTACTGAGGCAGT
GAGCAGGCAGATTGAGGCCACAGCAGCAGTTCTCCGGCCCAAAAAGCCCAAAGGAAAGAAGATT
GTCAATAAAGGCCCAAATTCTGCCTCTGAGATCACTGAGGCTCCACCCACCACTCAGATGGTTA
CAAACCAAACCATAGTAGCTACTATTCGAGTCAAGAGAGGGTCTAGGGCTCGAAAGGCTGGCAC
TAAGGCTCGGGTAACTGAAAGCCAGACTCCAGTTGCTGACCAGGGGGCTCAGGTGAAGATGGCT
GCCTCTCAGACCAGCATAAGCGCCCTTGAGACTCAGGTTGCTGCTGCTGTCCAGGCCCTGGCAG
ATGACTATTTGGCTCAGTTGAGTCTGGAGCCCACAACTAGGACCCGGGGCAAGAGAAACCGAAA
GTCCAAACATCCAAATGGGGATGAGAGAAGTGGCAGTAATTATAGGCGGATCCCATGGGGCCGG
AGGCCTACGCCACCACGAGATGTGGCCATTTTGCAAGAAAGGGCAAATAAATTGGTGAAATACC
TGTTGGTTAAGGATCAAACAAAGATCCCCATAAAGCGCTCAGACATGCTGAAGGATGTCATCCA
AGAATATGATGAATATTTCCCAGAGATCATTGAACGAGCAAGCTACGCTCTGGAAAAGATGTTT
CGAGTCAATCTGAAGGAAATCGATAAGCAAAGTAGCTTGTATATTCTGATCAGCACTCAGGAAT
CCTCTGCAGGCATACTGGGAACGACCAAGGATACACCCAAGCTGGGTCTCCTCATGGTGATTCT
GAGTGTCATTTTTATGAATGGCAACAAGGCCAGTGAGGCTGTCATCTGGGAGGTGCTGCGCAAG
TTGGGGCTACGCCCTGGGGTGAGACATTCACTTTTTGGGGAAGTGAGGAAGCTCATCACAGACG
AATTTGTGAAGCAAAAGTACCTGGAGTATAAGAGGGTCCCCAACAGCAGACCACCTGAGTATGA
GTTCTTCTGGGGCCTGCGCTCTTACCATGAGACTAGCAAGATGAAAGTCCTCAAGTTTGCATGC
AAGGTGCAGAAGAAAGACCCCAAAGACTGGGCTGCTCAGTATCGGGAGGCAGTGGAGATGGAAG
TCCAAGCTGCAGCTGTGGCTGTGGCTGAGGCTGAGGCCAGGGCTGAGGCAAGAGCCCAAATGGG
GATTGGAGAGGAAGCTGTGGCTGGGCCTTGGAATTGGGATGACATGGATATCGACTGCCTAACA
AGGGAAGAATTAGGTGATGATGCTCAGGCCTGGAGCAGATTTTCATTTGAAATTGAGGCGAGAG
CCCAAGAAAATGCAGATGCCACCACCAATGTCAACTTCAACCGAGGAACTAGCACCAGGGGTGG
TTTCAGTGATGGTGCTAGTGTTAGCTTTAATGGTGCACCCGGCCCCAGTGATGGCTTTGGTGGT
GGAGCTGGTATTACCTTCGGAGGTGCACCTAGCACCAGTGCTAGCTTCAGCAATGCAGCCAGCA
TTAGCTTTGGTGGCACATCCAGTACCAGTGCCAGTTTCAGCAGTGCAGCCAGCATTAGCTTTGG
TGGTGCACCCAGCACTAACACTAGTTTCAGCGGTGGAGCCAGCATTAGCTTTGGTGGTGCACCC
AGTACCAGTGCCAGCTTCTGCAGCACAGCCAGCATTAGCTTTGGTGGCACACCTAACACTATTA
CTAGTTTCAGTGGAGGAGCCAGCATTAGCTTTGGTGGTGCACCCAGCACTAGCACTAGTTTCAG
CAGCACAGCCAGCATTAGTTTTGGTGGTGCACCCAGCACAAGCACCAGCTTTAGTGGAGGAGCC
TGCATTAGCTTTGGTGGTGCACCCAGCATCGGCACCAGCTTTAGTGGGGGAGCCAGCATTAGCT
TTGGTGGTGCACCTGGCACCGGCACTAGTTACAGTGGTGGAGCCAGCATCAGTTTTGGTGGTGC
ACCTTGTACAAGTGCCAGTTTCAGTGGTGGAGCCAGCTCTGGCTTTGGAGGCACGCTCAGCAGC
ACCACAGCTGGCTTTAGCAGTGCACTTAGCACTAGCACCAGCTTTGGCAGTACACCCACCACAA
GCACTGTCTTCACTGGCGCACTTAGCACCAGCACTGGCTTTGGAGGCACACTTAGCACCAGTGT
ATGTTTTGGTGGCTCTCCAAGTTCTGGTTCCAGCTTTGGTGGCACACTCAGTACTAGTATCTGT
TTCGGTGGCTCTCCTAGCACCAGCACTGGTTTTGGTGGTACACTAAGCACCAGTGTCTCCTTTG
GTGGCTCTTCTATCACCAGTCCTGACTTTGGAGGTACACTAAGCACCAGTGTCTGCTTTGGTGG
CTCTCCTAGTACCAGTGCCAGCTTTGGTGGTGCACTTAATAGCAGTGCTGGCTTTGGCGGTGCC
ATCAGCACCAGTGCCGGCTTTGGTGATGCCATCAGCACCAGTGCCAACTTTGGCAGTGCACTTA
ACAGCAGTGCTGGCTTTGGCAGTGCCATCAGCACCAGCTCCAGCTTCGGTGGTGCACTCAACAG
CAATGCCAGCTTCAGCAGTGCCATTGGCACCAGTGCTGGCTTTGGTGGTGCCATCAGCACCAAT
ACTGGCTTTGGCAGTACACTCAATAGCAGTGCCGGCTTTGGCAGTGTCATCAGCACCAGTGCCG
GCTTTGGAGGTGCACTCAGCAGCAGTGCCGGCTTTGGCAATGCCATGAGTACCAGTGCTGGCTT
TGATGGTGCTGTCAGTACTAGTGCTGGCTTCAGTGGTGCACCAAGCACCAACCCTGGCTTTGGT
GGTGCATTCAGCACCAGTGCTGGCTTCAGTGGGGCACTTAGTACCACTACTGACTTTGGCAGTA
CTCACAGCAACAGCATTGGCTTTGGCAGTGCTCCCAGCACCAGCGTCAGCTTTGGTGGTGCTCA
CAGCACCAGCCTCTGTTTTGGTGGAGCTCCCAGCACCAGCCTCTGCTTTGGCAGTGCATCTAAC
ACCAACCTATGCTTTGGTGGCTCTCCTAGCACCAGTGCCTGCTTTAGTGGTGCCACCAGTGCCA
GTTTTAGTGATGGACTCAGCACCAGTGCCGGTTTCAGCTTTGGTAATGGGTTAAGCACCAGTGC
TGGATTTGGAGGTGGACTGAGCACCAGTGCTGGCTTCGGTGGCAACCTAGGCACCAGTACTGGC
TTCGGTGGCGGCCTAGGCAGTGGCTCCGGCTTCGATGGTGGCCTAGGTACCAGTGCTGACTTTG
GTGGCGGACTAAGCACCAGCACTGGCTTCGGTGGCGGACTAGGCACTGGCACTGACTTTGATGG
TGGACTAGGCACCGGCACTGGCTTTGGTGGTGGATTAGGTACCAGTGCTGGCTTCAGTGGCGGA
CTGGGTACCAGCACTGGCTTTGGTGGCGAACTAGTCACCAGTGATGGCTTTGGTAGTGCACTGG
GTACCAATGCTGGTTTTGGCGGCACACTTGGCACTGGTGTGGGTTTTAGTGGTGGCCTCAGCAC
CAGCGATGGCTTTGGCGGTGGGCCTAATGCCAGCTTTGACAGAGGACTGAGTACCATCATTGGC
TTTGGCAGTGGTTCCAACACCAGCACTGGCTTTACTGGCGAACCCAGCACCGGCACCAGCTTCA
ATAGTGGACCCACTTCTATTGTTGGCTTCAATAGTGGACCGAGCACTGGTGCTGGCTTCTGCAG
TGGGCCAAGCACTGGTGGCTTTGGTGGTGGACTGAGCACTGGAGCTGGCTTTGGCGGACCGAGC
ACCGGAGCTGGCTTCGGTGGTGGACTGGGCACCAGTACAGGCTTCGGTGGACCAAGCAGCAGTG
CTGGCTTCGGTGGTGGACCAAGCAGCAGTGCTGGATTCGGCGGTGGACCGAGCACCGGTTCTGG
CTTTGGTGGTGGACCTAATAGCCTTGGTGCCTGTGGCTTCTCCTACGGCTAATGAAGTTTCAGG
TTTATTCCCCATGTTTACAGACACCACTAATAAATTGCAGCAGTCTTTCCCATGGAGCCAAGGT
ACAGCCTTGGAATCTTTGTCCACACAGCAATCCTAAGCAGCTACTACCAATCAGCTGAGGGTGA
CATGCTTTGAAAAAAATCTGTTCGCTGTTCTTGCTTTCTTGTTTGCTTTCTGTGTGCTGTCATA
TTTTGGTATTAGAGTTATTAAATTTGCAAAATGAA

hide sequence

RefSeq Acc Id:

XM_021719779 ⟹ XP_021575454

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	X	39,400,999 - 39,411,946 (+)	NCBI
SpeTri2.0	NW_004936751	1,740,804 - 1,751,727 (+)	NCBI

Sequence:

show sequence

CGGGGGGACTGGCTCAGACCTAAGGAGAGGCTTGGAGAGAGCAGACGCTTTCTGGACTCCAGAG
GACGAGCCTATTTCTCTCAGGCTCAGCTTTTACTTGGCTTTCCAGAAAGATGGATAGAAGAAAT
GACTATGGTTATAGAACAACGGTGTTCCAGGGCCCTCTGCCTCCCTCTGGGAGCCTGGGGCTTC
CCTTCCCTCCAGATGTAGAGACCGAGACCACAGAAGAGGACAGTGTCTTGCTGATGCATACCCT
GTTGGCGGCAACCAAGGACCCACCTGTTGCCAACCGACCTAAGAAAAGCAAGACCAAGAAGACT
TCTCTTAAGGCTGTTACTAAGTCTGCACCTGCTGCCTCTCCAGTCCCAACTGCCAATGAGATTG
CCACCAACAAGCCCAAAATAACTTTACAGGCTTTAAACTTGCCCATGCTCACTCAGATCAGCCA
GTCTTCAGCTACTACTGAGGTAGCCAATATTCAGGCTTCTTCAGTCACTGTTCAGCCTAAGAAA
GCCAACAAGACAAAGAGAGTTTCTGCCAAGGTAGCTCAAGGCTCCCAGTCCCCAACTGGGAGTG
AGGGTGTTACTACCCAACTCAAGTCACCCTTGCAGACCCTAAACCTACCAGTGATTTCACAGAC
AATCCAGGTTCCAGTTGCCAGTGAGTCAGCCAGTTCCTTGGCCTTGATAGTCTCTACCAAGCCT
AAGAAAGCTTCCAAGGCCAAGAAGGCTGCCAATAAGACCATAGCTAGTGCCACTGAAATCTTAC
CAGCTCCAACTACTATCCACATAGCTACTACCCAAGGCCAAATTACCAGTGAGACAGCCAATAT
CCAAGCTACAGCAGCCTCTATCAGAACCAAGAAAGCTCCCAAGGCCAAGAAGACAACTGCTAAG
GCCCCAAATACTGACACAGAACATCTAGAGTCTCCAAATTCTACTGAGGCAGTGAGCAGGCAGA
TTGAGGCCACAGCAGCAGTTCTCCGGCCCAAAAAGCCCAAAGGAAAGAAGATTGTCAATAAAGG
CCCAAATTCTGCCTCTGAGATCACTGAGGCTCCACCCACCACTCAGATGGTTACAAACCAAACC
ATAGTAGCTACTATTCGAGTCAAGAGAGGGTCTAGGGCTCGAAAGGCTGGCACTAAGGCTCGGG
TAACTGAAAGCCAGACTCCAGTTGCTGACCAGGGGGCTCAGGTGAAGATGGCTGCCTCTCAGAC
CAGCATAAGCGCCCTTGAGACTCAGGTTGCTGCTGCTGTCCAGGCCCTGGCAGATGACTATTTG
GCTCAGTTGAGTCTGGAGCCCACAACTAGGACCCGGGGCAAGAGAAACCGAAAGTCCAAACATC
CAAATGGGGATGAGAGAAGTGGCAGTAATTATAGGCGGATCCCATGGGGCCGGAGGCCTACGCC
ACCACGAGATGTGGCCATTTTGCAAGAAAGGGCAAATAAATTGGTGAAATACCTGTTGGTTAAG
GATCAAACAAAGATCCCCATAAAGCGCTCAGACATGCTGAAGGATGTCATCCAAGAATATGATG
AATATTTCCCAGAGATCATTGAACGAGCAAGCTACGCTCTGGAAAAGATGTTTCGAGTCAATCT
GAAGGAAATCGATAAGCAAAGTAGCTTGTATATTCTGATCAGCACTCAGGAATCCTCTGCAGGC
ATACTGGGAACGACCAAGGATACACCCAAGCTGGGTCTCCTCATGGTGATTCTGAGTGTCATTT
TTATGAATGGCAACAAGGCCAGTGAGGCTGTCATCTGGGAGGTGCTGCGCAAGTTGGGGCTACG
CCCTGGGGTGAGACATTCACTTTTTGGGGAAGTGAGGAAGCTCATCACAGACGAATTTGTGAAG
CAAAAGTACCTGGAGTATAAGAGGGTCCCCAACAGCAGACCACCTGAGTATGAGTTCTTCTGGG
GCCTGCGCTCTTACCATGAGACTAGCAAGATGAAAGTCCTCAAGTTTGCATGCAAGGTGCAGAA
GAAAGACCCCAAAGACTGGGCTGCTCAGTATCGGGAGGCAGTGGAGATGGAAGTCCAAGCTGCA
GCTGTGGCTGTGGCTGAGGCTGAGGCCAGGGCTGAGGCAAGAGCCCAAATGGGGATTGGAGAGG
AAGCTGTGGCTGGGCCTTGGAATTGGGATGACATGGATATCGACTGCCTAACAAGGGAAGAATT
AGTGGTTCCAACACCAGCACTGGCTTTACTGGCGAACCCAGCACCGGCACCAGCTTCAATAGTG
GACCCACTTCTATTGTTGGCTTCAATAGTGGACCGAGCACTGGTGCTGGCTTCTGCAGTGGGCC
AAGCACTGGTGGCTTTGGTGGTGGACTGAGCACTGGAGCTGGCTTTGGCGGACCGAGCACCGGA
GCTGGCTTCGGTGGTGGACTGGGCACCAGTACAGGCTTCGGTGGACCAAGCAGCAGT

hide sequence

RefSeq Acc Id:

XM_021719780 ⟹ XP_021575455

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	X	39,400,999 - 39,411,888 (+)	NCBI
SpeTri2.0	NW_004936751	1,740,804 - 1,751,739 (+)	NCBI

Sequence:

show sequence

CGGGGGGACTGGCTCAGACCTAAGGAGAGGCTTGGAGAGAGCAGACGCTTTCTGGACTCCAGAG
GACGAGCCTATTTCTCTCAGGCTCAGCTTTTACTTGGCTTTCCAGAAAGATGGATAGAAGAAAT
GACTATGGTTATAGAACAACGGTGTTCCAGGGCCCTCTGCCTCCCTCTGGGAGCCTGGGGCTTC
CCTTCCCTCCAGATGTAGAGACCGAGACCACAGAAGAGGACAGTGTCTTGCTGATGCATACCCT
GTTGGCGGCAACCAAGGACCCACCTGTTGCCAACCGACCTAAGAAAAGCAAGACCAAGAAGACT
TCTCTTAAGGCTGTTACTAAGTCTGCACCTGCTGCCTCTCCAGTCCCAACTGCCAATGAGATTG
CCACCAACAAGCCCAAAATAACTTTACAGGCTTTAAACTTGCCCATGCTCACTCAGATCAGCCA
GTCTTCAGCTACTACTGAGGTAGCCAATATTCAGGCTTCTTCAGTCACTGTTCAGCCTAAGAAA
GCCAACAAGACAAAGAGAGTTTCTGCCAAGGTAGCTCAAGGCTCCCAGTCCCCAACTGGGAGTG
AGGGTGTTACTACCCAACTCAAGTCACCCTTGCAGACCCTAAACCTACCAGTGATTTCACAGAC
AATCCAGGTTCCAGTTGCCAGTGAGTCAGCCAGTTCCTTGGCCTTGATAGTCTCTACCAAGCCT
AAGAAAGCTTCCAAGGCCAAGAAGGCTGCCAATAAGACCATAGCTAGTGCCACTGAAATCTTAC
CAGCTCCAACTACTATCCACATAGCTACTACCCAAGGCCAAATTACCAGTGAGACAGCCAATAT
CCAAGCTACAGCAGCCTCTATCAGAACCAAGAAAGCTCCCAAGGCCAAGAAGACAACTGCTAAG
GCCCCAAATACTGACACAGAACATCTAGAGTCTCCAAATTCTACTGAGGCAGTGAGCAGGCAGA
TTGAGGCCACAGCAGCAGTTCTCCGGCCCAAAAAGCCCAAAGGAAAGAAGATTGTCAATAAAGG
CCCAAATTCTGCCTCTGAGATCACTGAGGCTCCACCCACCACTCAGATGGTTACAAACCAAACC
ATAGTAGCTACTATTCGAGTCAAGAGAGGGTCTAGGGCTCGAAAGGCTGGCACTAAGGCTCGGG
TAACTGAAAGCCAGACTCCAGTTGCTGACCAGGGGGCTCAGGTGAAGATGGCTGCCTCTCAGAC
CAGCATAAGCGCCCTTGAGACTCAGGTTGCTGCTGCTGTCCAGGCCCTGGCAGATGACTATTTG
GCTCAGTTGAGTCTGGAGCCCACAACTAGGACCCGGGGCAAGAGAAACCGAAAGTCCAAACATC
CAAATGGGGATGAGAGAAGTGGCAGTAATTATAGGCGGATCCCATGGGGCCGGAGGCCTACGCC
ACCACGAGATGTGGCCATTTTGCAAGAAAGGGCAAATAAATTGGTGAAATACCTGTTGGTTAAG
GATCAAACAAAGATCCCCATAAAGCGCTCAGACATGCTGAAGGATGTCATCCAAGAATATGATG
AATATTTCCCAGAGATCATTGAACGAGCAAGCTACGCTCTGGAAAAGATGTTTCGAGTCAATCT
GAAGGAAATCGATAAGCAAAGTAGCTTGTATATTCTGATCAGCACTCAGGAATCCTCTGCAGGC
ATACTGGGAACGACCAAGGATACACCCAAGCTGGGTCTCCTCATGGTGATTCTGAGTGTCATTT
TTATGAATGGCAACAAGGCCAGTGAGGCTGTCATCTGGGAGGTGCTGCGCAAGTTGGGGCTACG
CCCTGGGGTGAGACATTCACTTTTTGGGGAAGTGAGGAAGCTCATCACAGACGAATTTGTGAAG
CAAAAGTACCTGGAGTATAAGAGGGTCCCCAACAGCAGACCACCTGAGTATGAGTTCTTCTGGG
GCCTGCGCTCTTACCATGAGACTAGCAAGATGAAAGTCCTCAAGTTTGCATGCAAGGTGCAGAA
GAAAGACCCCAAAGACTGGGCTGCTCAGTATCGGGAGGCAGTGGAGATGGAAGTCCAAGCTGCA
GCTGTGGCTGTGGCTGAGGCTGAGGCCAGGGCTGAGTGGTTCCAACACCAGCACTGGCTTTACT
GGCGAACCCAGCACCGGCACCAGCTTCAATAGTGGACCCACTTCTATTGTTGGCTTCAATAGTG
GACCGAGCACTGGTGCTGGCTTCTGCAGTGGGCCAAGCACTGGTGGCTTTGGTGGTGGACTGAG
CACTGGAGCTGGCTTTGGCGGACCGAGCACCGGAGCTGGCTTCGGTGGTGGACTGGGCACCAGT
ACAGGCTTCGGTGGACCAAGCAGCAGTGCTGGCTTCGGT

hide sequence

RefSeq Acc Id:

XM_040281338 ⟹ XP_040137272

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	X	39,401,098 - 39,412,531 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_021575451	(Get FASTA)	NCBI Sequence Viewer
	XP_021575452	(Get FASTA)	NCBI Sequence Viewer
	XP_021575454	(Get FASTA)	NCBI Sequence Viewer
	XP_021575455	(Get FASTA)	NCBI Sequence Viewer
	XP_040137272	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000023851.2
GenBank Protein	KAG3272203	(Get FASTA)	NCBI Sequence Viewer
	KAG3272204	(Get FASTA)	NCBI Sequence Viewer
	KAG3272205	(Get FASTA)	NCBI Sequence Viewer
	KAG3272206	(Get FASTA)	NCBI Sequence Viewer
	KAG3272207	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_021575451 ⟸ XM_021719776

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDRRNDYGYRTTVFQGPLPPSGSLGLPFPPDVETETTEEDSVLLMHTLLAATKDPPVANRPKKS
KTKKTSLKAVTKSAPAASPVPTANEIATNKPKITLQALNLPMLTQISQSSATTEVANIQASSVT
VQPKKANKTKRVSAKVAQGSQSPTGSEGVTTQLKSPLQTLNLPVISQTIQVPVASESASSLALI
VSTKPKKASKAKKAANKTIASATEILPAPTTIHIATTQGQITSETANIQATAASIRTKKAPKAK
KTTAKAPNTDTEHLESPNSTEAVSRQIEATAAVLRPKKPKGKKIVNKGPNSASEITEAPPTTQM
VTNQTIVATIRVKRGSRARKAGTKARVTESQTPVADQGAQVKMAASQTSISALETQVAAAVQAL
ADDYLAQLSLEPTTRTRGKRNRKSKHPNGDERSGSNYRRIPWGRRPTPPRDVAILQERANKLVK
YLLVKDQTKIPIKRSDMLKDVIQEYDEYFPEIIERASYALEKMFRVNLKEIDKQSSLYILISTQ
ESSAGILGTTKDTPKLGLLMVILSVIFMNGNKASEAVIWEVLRKLGLRPGVRHSLFGEVRKLIT
DEFVKQKYLEYKRVPNSRPPEYEFFWGLRSYHETSKMKVLKFACKVQKKDPKDWAAQYREAVEM
EVQAAAVAVAEAEARAEARAQMGIGEEAVAGPWNWDDMDIDCLTREELGDDAQAWSRFSFEIEA
RAQENADATTNVNFNRGTSTRGGFSDGASVSFNGAPGPSDGFGGGAGITFGGAPSTSASFSNAA
SISFGGTSSTSASFSSAASISFGGAPSTNTSFSGGASISFGGAPSTSASFCSTASISFGGTPNT
ITSFSGGASISFGGAPSTSTSFSSTASISFGGAPSTSTSFSGGACISFGGAPSIGTSFSGGASI
SFGGAPGTGTSYSGGASISFGGAPCTSASFSGGASSGFGGTLSSTTAGFSSALSTSTSFGSTPT
TSTVFTGALSTSTGFGGTLSTSVCFGGSPSSGSSFGGTLSTSICFGGSPSTSTGFGGTLSTSVS
FGGSSITSPDFGGTLSTSVCFGGSPSTSASFGGALNSSAGFGGAISTSAGFGDAISTSANFGSA
LNSSAGFGSAISTSSSFGGALNSNASFSSAIGTSAGFGGAISTNTGFGSTLNSSAGFGSVISTS
AGFGGALSSSAGFGNAMSTSAGFDGAVSTSAGFSGAPSTNPGFGGAFSTSAGFSGALSTTTDFG
STHSNSIGFGSAPSTSVSFGGAHSTSLCFGGAPSTSLCFGSASNTNLCFGGSPSTSACFSGATS
ASFSDGLSTSAGFSFGNGLSTSAGFGGGLSTSAGFGGNLGTSTGFGGGLGSGSGFDGGLGTSAD
FGGGLSTSTGFGGGLGTGTDFDGGLGTGTGFGGGLGTSAGFSGGLGTSTGFGGELVTSDGFGSA
LGTNAGFGGTLGTGVGFSGGLSTSDGFGGGPNASFDRGLSTIIGFGSGSNTSTGFTGEPSTGTS
FNSGPTSIVGFNSGPSTGAGFCSGPSTGGFGGGLSTGAGFGGPSTGAGFGGGLGTSTGFGGPSS
SAGFGGGPSSSAGFGGGPSTGSGFGGGPNSLGACGFSYG

hide sequence

RefSeq Acc Id:

XP_021575455 ⟸ XM_021719780

- Peptide Label:

isoform X4

- Sequence:

show sequence

MDRRNDYGYRTTVFQGPLPPSGSLGLPFPPDVETETTEEDSVLLMHTLLAATKDPPVANRPKKS
KTKKTSLKAVTKSAPAASPVPTANEIATNKPKITLQALNLPMLTQISQSSATTEVANIQASSVT
VQPKKANKTKRVSAKVAQGSQSPTGSEGVTTQLKSPLQTLNLPVISQTIQVPVASESASSLALI
VSTKPKKASKAKKAANKTIASATEILPAPTTIHIATTQGQITSETANIQATAASIRTKKAPKAK
KTTAKAPNTDTEHLESPNSTEAVSRQIEATAAVLRPKKPKGKKIVNKGPNSASEITEAPPTTQM
VTNQTIVATIRVKRGSRARKAGTKARVTESQTPVADQGAQVKMAASQTSISALETQVAAAVQAL
ADDYLAQLSLEPTTRTRGKRNRKSKHPNGDERSGSNYRRIPWGRRPTPPRDVAILQERANKLVK
YLLVKDQTKIPIKRSDMLKDVIQEYDEYFPEIIERASYALEKMFRVNLKEIDKQSSLYILISTQ
ESSAGILGTTKDTPKLGLLMVILSVIFMNGNKASEAVIWEVLRKLGLRPGVRHSLFGEVRKLIT
DEFVKQKYLEYKRVPNSRPPEYEFFWGLRSYHETSKMKVLKFACKVQKKDPKDWAAQYREAVEM
EVQAAAVAVAEAEARAEWFQHQHWLYWRTQHRHQLQ

hide sequence

RefSeq Acc Id:

XP_021575454 ⟸ XM_021719779

- Peptide Label:

isoform X3

- Sequence:

show sequence

MDRRNDYGYRTTVFQGPLPPSGSLGLPFPPDVETETTEEDSVLLMHTLLAATKDPPVANRPKKS
KTKKTSLKAVTKSAPAASPVPTANEIATNKPKITLQALNLPMLTQISQSSATTEVANIQASSVT
VQPKKANKTKRVSAKVAQGSQSPTGSEGVTTQLKSPLQTLNLPVISQTIQVPVASESASSLALI
VSTKPKKASKAKKAANKTIASATEILPAPTTIHIATTQGQITSETANIQATAASIRTKKAPKAK
KTTAKAPNTDTEHLESPNSTEAVSRQIEATAAVLRPKKPKGKKIVNKGPNSASEITEAPPTTQM
VTNQTIVATIRVKRGSRARKAGTKARVTESQTPVADQGAQVKMAASQTSISALETQVAAAVQAL
ADDYLAQLSLEPTTRTRGKRNRKSKHPNGDERSGSNYRRIPWGRRPTPPRDVAILQERANKLVK
YLLVKDQTKIPIKRSDMLKDVIQEYDEYFPEIIERASYALEKMFRVNLKEIDKQSSLYILISTQ
ESSAGILGTTKDTPKLGLLMVILSVIFMNGNKASEAVIWEVLRKLGLRPGVRHSLFGEVRKLIT
DEFVKQKYLEYKRVPNSRPPEYEFFWGLRSYHETSKMKVLKFACKVQKKDPKDWAAQYREAVEM
EVQAAAVAVAEAEARAEARAQMGIGEEAVAGPWNWDDMDIDCLTREELVVPTPALALLANPAPA
PASIVDPLLLLASIVDRALVLASAVGQALVALVVD

hide sequence

RefSeq Acc Id:

XP_021575452 ⟸ XM_021719777

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDRRNDYGYRTTVFQGPLPPSGSLGLPFPPDVETETTEEDSVLLMHTLLAATKDPPVANRPKKS
KTKKTSLKAVTKSAPAASPVPTANEIATNKPKITLQALNLPMLTQISQSSATTEVANIQASSVT
VQPKKANKTKRVSAKVAQGSQSPTGSEGVTTQLKSPLQTLNLPVISQTIQVPVASESASSLALI
VSTKPKKASKAKKAANKTIASATEILPAPTTIHIATTQGQITSETANIQATAASIRTKKAPKAK
KTTAKAPNTDTEHLESPNSTEAVSRQIEATAAVLRPKKPKGKKIVNKGPNSASEITEAPPTTQM
VTNQTIVATIRVKRGSRARKAGTKARVTESQTPVADQGAQVKMAASQTSISALETQVAAAVQAL
ADDYLAQLSLEPTTRTRGKRNRKSKHPNGDERSGSNYRRIPWGRRPTPPRDVAILQERANKLVK
YLLVKDQTKIPIKRSDMLKDVIQEYDEYFPEIIERASYALEKMFRVNLKEIDKQSSLYILISTQ
ESSAGILGTTKDTPKLGLLMVILSVIFMNGNKASEAVIWEVLRKLGLRPGVRHSLFGEVRKLIT
DEFVKQKYLEYKRVPNSRPPEYEFFWGLRSYHETSKMKVLKFACKVQKKDPKDWAAQYREAVEM
EVQAAAVAVAEAEARAEARAQMGIGEEAVAGPWNWDDMDIDCLTREELGDDAQAWSRFSFEIEA
RAQENADATTNVNFNRGTSTRGGFSDGASVSFNGAPGPSDGFGGGAGITFGGAPSTSASFSNAA
SISFGGTSSTSASFSSAASISFGGAPSTNTSFSGGASISFGGAPSTSASFCSTASISFGGTPNT
ITSFSGGASISFGGAPSTSTSFSSTASISFGGAPSTSTSFSGGACISFGGAPSIGTSFSGGASI
SFGGAPGTGTSYSGGASISFGGAPCTSASFSGGASSGFGGTLSSTTAGFSSALSTSTSFGSTPT
TSTVFTGALSTSTGFGGTLSTSVCFGGSPSSGSSFGGTLSTSICFGGSPSTSTGFGGTLSTSVS
FGGSSITSPDFGGTLSTSVCFGGSPSTSASFGGALNSSAGFGGAISTSAGFGDAISTSANFGSA
LNSSAGFGSAISTSSSFGGALNSNASFSSAIGTSAGFGGAISTNTGFGSTLNSSAGFGSVISTS
AGFGGALSSSAGFGNAMSTSAGFDGAVSTSAGFSGAPSTNPGFGGAFSTSAGFSGALSTTTDFG
STHSNSIGFGSAPSTSVSFGGAHSTSLCFGGAPSTSLCFGSASNTNLCFGGSPSTSACFSGATS
ASFSDGLSTSAGFSFGNGLSTSAGFGGGLSTSAGFGGNLGTSTGFGGGLGSGSGFDGGLGTSAD
FGGGLSTSTGFGGGLGTGTDFDGGLGTGTGFGGGLGTSAGFSGGLGTSTGFGGELVTSDGFGSA
LGTNAGFGGTLGTGVGFSGGLSTSDGFGGGPNASFDRGLSTIIGFGSGSNTSTGFTGEPSTGTS
FNSGPTSIVGFNSGPSTGAGFCSGPSTGGFGGGLSTGAGFGGPSTGAGFGGGLGTSTGFGGPSS
SAGFGGGPSSSAGFGGGPSTGSGFGGGPNSLGACGFSYG

hide sequence

RefSeq Acc Id:	XP_040137272 ⟸ XM_040281338
- Peptide Label:	isoform X2

Protein Domains

MAGE

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000020140	UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000021745.2	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.1200	UniProtKB/TrEMBL
	1.10.10.1210	UniProtKB/TrEMBL
InterPro	MAGE	UniProtKB/TrEMBL
	MAGE_WH1	UniProtKB/TrEMBL
	MAGE_WH2	UniProtKB/TrEMBL
	MHD_dom	UniProtKB/TrEMBL
NCBI Gene	LOC101976785	ENTREZGENE
PANTHER	PTHR11736	UniProtKB/TrEMBL
	TROPHININ	UniProtKB/TrEMBL
Pfam	MAGE	UniProtKB/TrEMBL
PROSITE	MAGE	UniProtKB/TrEMBL
SMART	MAGE	UniProtKB/TrEMBL
UniProt	I3NHK4_ICTTR	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-07-13	Tro	trophinin	LOC101976785		Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar