Kcne5 (potassium voltage-gated channel subfamily E regulatory subunit 5) - Rat Genome Database

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Gene: Kcne5 (potassium voltage-gated channel subfamily E regulatory subunit 5) Ictidomys tridecemlineatus
Analyze
Symbol: Kcne5
Name: potassium voltage-gated channel subfamily E regulatory subunit 5
RGD ID: 12563302
Description: ENCODES a protein that exhibits delayed rectifier potassium channel activity (inferred); potassium channel regulator activity (inferred); transmembrane transporter binding (inferred); INVOLVED IN atrial cardiac muscle cell action potential (inferred); cardiac muscle contraction (inferred); membrane repolarization during action potential (inferred); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); Brugada syndrome (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred); voltage-gated potassium channel complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: KCNE1-like; Kcne1l; potassium voltage-gated channel subfamily E regulatory beta subunit 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X82,099,472 - 82,100,922 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364995,557,202 - 5,557,627 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364995,557,076 - 5,558,467 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Kcne5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X82,099,472 - 82,100,922 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364995,557,202 - 5,557,627 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364995,557,076 - 5,558,467 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCNE5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X109,623,700 - 109,625,172 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX109,623,700 - 109,625,172 (-)EnsemblGRCh38hg38GRCh38
GRCh37X108,866,929 - 108,868,401 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X108,753,585 - 108,755,049 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X108,673,073 - 108,674,538NCBI
CeleraX109,346,567 - 109,348,031 (-)NCBICelera
Cytogenetic MapXq23NCBI
HuRefX98,489,930 - 98,491,217 (-)NCBIHuRef
CHM1_1X108,778,194 - 108,779,658 (-)NCBICHM1_1
T2T-CHM13v2.0X108,071,490 - 108,072,962 (-)NCBIT2T-CHM13v2.0
Kcne5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X141,087,749 - 141,089,194 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX141,087,748 - 141,089,290 (-)EnsemblGRCm39 Ensembl
GRCm38X142,304,753 - 142,306,198 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX142,304,752 - 142,306,294 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X138,739,296 - 138,740,741 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X137,551,121 - 137,552,566 (-)NCBIMGSCv36mm8
CeleraX126,300,230 - 126,301,675 (-)NCBICelera
Cytogenetic MapXF2NCBI
cM MapX63.11NCBI
Kcne5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X110,727,234 - 110,727,849 (-)NCBIGRCr8
mRatBN7.2X105,930,398 - 105,931,013 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX105,930,398 - 105,931,013 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX108,068,193 - 108,068,808 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X111,567,368 - 111,567,983 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X109,133,664 - 109,134,279 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X113,583,844 - 113,584,459 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX113,583,844 - 113,584,459 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X112,033,789 - 112,034,404 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X36,243,961 - 36,244,576 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX105,344,535 - 105,345,150 (-)NCBICelera
Cytogenetic MapXq33NCBI
Kcne5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554906,242,197 - 6,243,627 (+)NCBIChiLan1.0ChiLan1.0
KCNE5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X109,114,032 - 109,115,971 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X109,117,636 - 109,119,108 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X98,731,109 - 98,732,575 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X109,201,428 - 109,202,890 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX109,202,320 - 109,202,748 (-)Ensemblpanpan1.1panPan2
KCNE5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X82,844,188 - 82,845,641 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX82,845,064 - 82,846,083 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX68,922,748 - 68,924,125 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X84,494,588 - 84,496,047 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX84,495,468 - 84,495,884 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X81,971,600 - 81,973,057 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X83,665,901 - 83,667,358 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X83,494,598 - 83,495,963 (-)NCBIUU_Cfam_GSD_1.0
KCNE5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX89,741,190 - 89,742,672 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X89,741,187 - 89,742,732 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X105,356,199 - 105,357,717 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KCNE5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X97,477,667 - 97,485,376 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX97,478,562 - 97,478,987 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606522,673,085 - 22,676,609 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kcne5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248036,385,405 - 6,385,876 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005323363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000012411   ⟹   ENSSTOP00000011120
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364995,557,202 - 5,557,627 (+)Ensembl
RefSeq Acc Id: XM_005323363   ⟹   XP_005323420
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X82,099,472 - 82,100,922 (-)NCBI
SpeTri2.0NW_0049364995,557,076 - 5,558,467 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005323420 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000011120.2
GenBank Protein KAG3272730 (Get FASTA)   NCBI Sequence Viewer  
  KAG3272731 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005323420   ⟸   XM_005323363
- UniProtKB: I3MJ37 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000011120   ⟸   ENSSTOT00000012411


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000012417 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000012411.2 UniProtKB/TrEMBL
InterPro K_chnl_KCNE UniProtKB/TrEMBL
NCBI Gene Kcne5 ENTREZGENE
PANTHER POTASSIUM VOLTAGE-GATED CHANNEL SUBFAMILY E REGULATORY BETA SUBUNIT 5 UniProtKB/TrEMBL
  PTHR15282 UniProtKB/TrEMBL
UniProt I3MJ37 ENTREZGENE, UniProtKB/TrEMBL