Agmo (alkylglycerol monooxygenase) - Rat Genome Database

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Gene: Agmo (alkylglycerol monooxygenase) Ictidomys tridecemlineatus
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Symbol: Agmo
Name: alkylglycerol monooxygenase
RGD ID: 12562574
Description: ENCODES a protein that exhibits glyceryl-ether monooxygenase activity (inferred); iron ion binding (inferred); oxidoreductase activity (inferred); INVOLVED IN ether lipid metabolic process (inferred); lipid biosynthetic process (inferred); membrane lipid metabolic process (inferred); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511874,180,126 - 74,504,534 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365461,855,801 - 2,179,461 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365461,993,477 - 2,179,623 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Agmo
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511874,180,126 - 74,504,534 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365461,855,801 - 2,179,461 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365461,993,477 - 2,179,623 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AGMO
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38715,117,223 - 15,562,015 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl715,200,317 - 15,562,015 (-)EnsemblGRCh38hg38GRCh38
GRCh37715,239,942 - 15,601,640 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36715,206,468 - 15,568,165 (-)NCBINCBI36Build 36hg18NCBI36
Celera715,219,639 - 15,581,346 (-)NCBICelera
Cytogenetic Map7p21.2NCBI
HuRef715,123,252 - 15,486,473 (-)NCBIHuRef
CHM1_1715,239,321 - 15,601,040 (-)NCBICHM1_1
T2T-CHM13v2.0715,250,047 - 15,695,255 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2715,291,248 - 15,654,751 (-)NCBI
Agmo
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391237,291,638 - 37,632,201 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1237,291,640 - 37,632,201 (+)EnsemblGRCm39 Ensembl
GRCm381237,241,639 - 37,581,932 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1237,241,641 - 37,582,202 (+)EnsemblGRCm38mm10GRCm38
MGSCv371237,968,226 - 38,308,519 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361237,752,045 - 37,914,494 (+)NCBIMGSCv36mm8
Celera1238,679,380 - 39,021,590 (+)NCBICelera
Cytogenetic Map12A3NCBI
cM Map1216.84NCBI
Agmo
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8659,713,495 - 60,044,851 (+)NCBIGRCr8
mRatBN7.2653,986,236 - 54,317,838 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl653,986,292 - 54,317,623 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx654,286,337 - 54,629,952 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0654,601,226 - 54,944,840 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0654,073,814 - 54,404,607 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0656,846,859 - 57,193,918 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl656,846,789 - 57,193,961 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0666,448,763 - 66,793,166 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4656,042,873 - 56,380,045 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1656,045,999 - 56,382,545 (+)NCBI
Celera653,118,342 - 53,442,669 (+)NCBICelera
Cytogenetic Map6q21NCBI
Agmo
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541018,713,191 - 18,881,824 (-)NCBIChiLan1.0ChiLan1.0
AGMO
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2620,032,513 - 20,444,733 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1768,357,236 - 68,769,456 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0715,863,957 - 16,219,070 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1715,194,384 - 15,549,186 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl715,180,426 - 15,549,016 (-)Ensemblpanpan1.1panPan2
AGMO
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11429,863,011 - 30,208,088 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1429,864,318 - 30,324,006 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1429,386,911 - 29,730,252 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01429,779,813 - 30,123,841 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1429,778,469 - 30,123,636 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11429,875,816 - 30,219,301 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01429,602,388 - 29,946,221 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01429,912,164 - 30,256,735 (-)NCBIUU_Cfam_GSD_1.0
AGMO
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl984,551,889 - 84,894,843 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1984,551,874 - 84,931,146 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2993,083,980 - 93,427,801 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AGMO
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12142,525,086 - 42,877,237 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2142,525,847 - 42,876,970 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604261,619,472 - 61,972,804 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Agmo
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473914,587,427 - 14,775,057 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000020501   ⟹   ENSSTOP00000020193
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365461,855,801 - 2,179,461 (-)Ensembl
RefSeq Acc Id: XM_040291151   ⟹   XP_040147085
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511874,180,126 - 74,504,534 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040147085 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000020193.2
GenBank Protein KAG3277913 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040147085   ⟸   XM_040291151
- UniProtKB: I3N747 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000020193   ⟸   ENSSTOT00000020501
Protein Domains
Fatty acid hydroxylase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000028632 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000020501.2 UniProtKB/TrEMBL
InterPro Fatty_acid_hydroxylase UniProtKB/TrEMBL
  Sterol_Desaturase/TMEM195 UniProtKB/TrEMBL
NCBI Gene Agmo ENTREZGENE
PANTHER ALKYLGLYCEROL MONOOXYGENASE UniProtKB/TrEMBL
  STEROL DESATURASE-RELATED PROTEIN UniProtKB/TrEMBL
Pfam FA_hydroxylase UniProtKB/TrEMBL
UniProt I3N747 ENTREZGENE, UniProtKB/TrEMBL