AGMO (alkylglycerol monooxygenase) - Rat Genome Database

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Gene: AGMO (alkylglycerol monooxygenase) Homo sapiens
Analyze
Symbol: AGMO
Name: alkylglycerol monooxygenase
RGD ID: 1606863
HGNC Page HGNC
Description: Enables glyceryl-ether monooxygenase activity and iron ion binding activity. Involved in ether lipid metabolic process and membrane lipid metabolic process. Located in endoplasmic reticulum.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: FLJ16237; glyceryl-ether monooxygenase; MGC131748; TMEM195; transmembrane protein 195
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl715,200,317 - 15,562,015 (-)EnsemblGRCh38hg38GRCh38
GRCh38715,117,223 - 15,562,015 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37715,239,942 - 15,601,640 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36715,206,468 - 15,568,165 (-)NCBINCBI36hg18NCBI36
Celera715,219,639 - 15,581,346 (-)NCBI
Cytogenetic Map7p21.2NCBI
HuRef715,123,252 - 15,486,473 (-)NCBIHuRef
CHM1_1715,239,321 - 15,601,040 (-)NCBICHM1_1
CRA_TCAGchr7v2715,291,248 - 15,654,751 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

Additional References at PubMed
PMID:12477932   PMID:12690205   PMID:20081858   PMID:20419449   PMID:20571754   PMID:20613766   PMID:20643956   PMID:21873635   PMID:22220568   PMID:22399527   PMID:23251661   PMID:24722188  
PMID:27000257   PMID:28586473   PMID:31555905   PMID:32296183  


Genomics

Comparative Map Data
AGMO
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl715,200,317 - 15,562,015 (-)EnsemblGRCh38hg38GRCh38
GRCh38715,117,223 - 15,562,015 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37715,239,942 - 15,601,640 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36715,206,468 - 15,568,165 (-)NCBINCBI36hg18NCBI36
Celera715,219,639 - 15,581,346 (-)NCBI
Cytogenetic Map7p21.2NCBI
HuRef715,123,252 - 15,486,473 (-)NCBIHuRef
CHM1_1715,239,321 - 15,601,040 (-)NCBICHM1_1
CRA_TCAGchr7v2715,291,248 - 15,654,751 (-)NCBI
Agmo
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391237,291,638 - 37,632,201 (+)NCBIGRCm39mm39
GRCm39 Ensembl1237,291,640 - 37,632,201 (+)Ensembl
GRCm381237,241,639 - 37,581,932 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1237,241,641 - 37,582,202 (+)EnsemblGRCm38mm10GRCm38
MGSCv371237,968,226 - 38,308,519 (+)NCBIGRCm37mm9NCBIm37
MGSCv361237,752,045 - 37,914,494 (+)NCBImm8
Celera1238,679,380 - 39,021,590 (+)NCBICelera
Cytogenetic Map12A3NCBI
Agmo
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2653,986,236 - 54,317,838 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl653,986,292 - 54,317,623 (+)Ensembl
Rnor_6.0656,846,859 - 57,193,918 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl656,846,789 - 57,193,961 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0666,448,763 - 66,793,166 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4656,042,873 - 56,380,045 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1656,045,999 - 56,382,545 (+)NCBI
Celera653,118,342 - 53,442,669 (+)NCBICelera
Cytogenetic Map6q21NCBI
Agmo
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541018,713,191 - 18,881,824 (-)NCBIChiLan1.0ChiLan1.0
AGMO
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1715,194,384 - 15,549,186 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl715,180,426 - 15,549,016 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0715,863,957 - 16,219,070 (-)NCBIMhudiblu_PPA_v0panPan3
AGMO
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11429,863,011 - 30,208,088 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1429,864,318 - 30,324,006 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1429,386,911 - 29,730,252 (-)NCBI
ROS_Cfam_1.01429,779,813 - 30,123,841 (-)NCBI
UMICH_Zoey_3.11429,875,816 - 30,219,301 (-)NCBI
UNSW_CanFamBas_1.01429,602,388 - 29,946,221 (-)NCBI
UU_Cfam_GSD_1.01429,912,164 - 30,256,735 (-)NCBI
Agmo
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511874,180,126 - 74,504,534 (-)NCBI
SpeTri2.0NW_0049365461,993,477 - 2,179,623 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AGMO
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl984,470,277 - 84,894,843 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1984,551,874 - 84,931,146 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2993,083,980 - 93,427,801 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AGMO
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12142,525,086 - 42,877,237 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2142,525,847 - 42,876,970 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604261,619,472 - 61,972,804 (-)NCBIVero_WHO_p1.0
Agmo
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473914,587,427 - 14,775,057 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
D7S2557  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37715,272,202 - 15,272,356UniSTSGRCh37
GRCh37715,272,336 - 15,272,485UniSTSGRCh37
Build 36715,238,861 - 15,239,010RGDNCBI36
Celera715,251,903 - 15,252,057UniSTS
Celera715,252,037 - 15,252,188RGD
Cytogenetic Map7p21.2UniSTS
HuRef715,155,451 - 15,155,605UniSTS
HuRef715,155,585 - 15,155,736UniSTS
CRA_TCAGchr7v2715,323,519 - 15,323,673UniSTS
CRA_TCAGchr7v2715,323,653 - 15,323,812UniSTS
Marshfield Genetic Map723.29RGD
Marshfield Genetic Map723.29UniSTS
Genethon Genetic Map723.7UniSTS
TNG Radiation Hybrid Map76048.0UniSTS
deCODE Assembly Map728.75UniSTS
Stanford-G3 RH Map7570.0UniSTS
GeneMap99-GB4 RH Map774.54UniSTS
Whitehead-YAC Contig Map7 UniSTS
NCBI RH Map7186.7UniSTS
GeneMap99-G3 RH Map7570.0UniSTS
RH92058  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37715,440,621 - 15,440,807UniSTSGRCh37
Build 36715,407,146 - 15,407,332RGDNCBI36
Celera715,420,309 - 15,420,495RGD
Cytogenetic Map7p21.2UniSTS
HuRef715,323,852 - 15,324,038UniSTS
CRA_TCAGchr7v2715,491,936 - 15,492,122UniSTS
GeneMap99-GB4 RH Map772.29UniSTS
G49562  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37715,476,425 - 15,476,617UniSTSGRCh37
Build 36715,442,950 - 15,443,142RGDNCBI36
Celera715,456,029 - 15,456,221RGD
Cytogenetic Map7p21.2UniSTS
HuRef715,359,695 - 15,359,887UniSTS
CRA_TCAGchr7v2715,527,777 - 15,527,969UniSTS
TNG Radiation Hybrid Map76135.0UniSTS
SHGC-144154  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37715,518,643 - 15,518,920UniSTSGRCh37
Build 36715,485,168 - 15,485,445RGDNCBI36
Celera715,498,358 - 15,498,635RGD
Cytogenetic Map7p21.2UniSTS
HuRef715,402,509 - 15,402,786UniSTS
CRA_TCAGchr7v2715,569,993 - 15,570,270UniSTS
TNG Radiation Hybrid Map76119.0UniSTS
SHGC-147914  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37715,379,329 - 15,379,631UniSTSGRCh37
Build 36715,345,854 - 15,346,156RGDNCBI36
Celera715,359,017 - 15,359,319RGD
Cytogenetic Map7p21.2UniSTS
HuRef715,262,354 - 15,262,656UniSTS
CRA_TCAGchr7v2715,430,644 - 15,430,946UniSTS
TNG Radiation Hybrid Map76071.0UniSTS
AFM074ZG5  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37715,256,408 - 15,256,590UniSTSGRCh37
Build 36715,222,933 - 15,223,115RGDNCBI36
Celera715,236,103 - 15,236,291RGD
Cytogenetic Map7p21.2UniSTS
HuRef715,139,643 - 15,139,831UniSTS
CRA_TCAGchr7v2715,307,715 - 15,307,903UniSTS
Whitehead-YAC Contig Map7 UniSTS
D7S2340  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37715,502,636 - 15,502,935UniSTSGRCh37
Build 36715,469,161 - 15,469,460RGDNCBI36
Celera715,482,351 - 15,482,650RGD
Cytogenetic Map7p21.2UniSTS
HuRef715,385,906 - 15,386,205UniSTS
CRA_TCAGchr7v2715,553,986 - 15,554,285UniSTS
Whitehead-RH Map755.8UniSTS
Whitehead-YAC Contig Map7 UniSTS
D11S2921  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map1p36.1UniSTS
Cytogenetic Map3p24.2UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map2q22.3UniSTS
Cytogenetic Map9q22.33UniSTS
Cytogenetic Map15q13.2UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map14q13.2UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map10q24.33UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map17q11UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map11q14UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map2q32.3UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map4q32.1UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map13q12UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map3p21.1UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map6q22UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map20q11UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map20q11.22UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map11q25UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map1q32.3UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map12q21.33UniSTS
Cytogenetic Map7p22.3UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic MapXp11.4-p11.3UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map1q24.1UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic Map10p15.1UniSTS
Cytogenetic Map18p11.31UniSTS
Cytogenetic Map12p13.32UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map1p22UniSTS
Cytogenetic Map2q14UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map7p22UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map8q24.11UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map9q22.31UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map2q33-q34UniSTS
Cytogenetic Map17q22.2UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic MapYp11.2UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map2q37UniSTS
Cytogenetic Map18pter-p11.3UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map2q21.3UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic MapXq22.1UniSTS
Cytogenetic Map10q22.2UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map4q34.1UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map3q13.31UniSTS
Cytogenetic Map7q21.12UniSTS
Cytogenetic Map15q22.2UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map12q23.2UniSTS
Cytogenetic Map6p22UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map16p13.13UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map1q44UniSTS
Cytogenetic Map19p13.1-p12UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map18p11.31-p11.21UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map7p21.2UniSTS
Cytogenetic Map12q23-q24.1UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic Map5p15.33UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map1q42.1UniSTS
Cytogenetic Map12p13UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic Map19q13.3-q13.4UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map5q35UniSTS
Cytogenetic Map8p23-p22UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map17q21-q22UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map11p13-p12UniSTS
Cytogenetic MapXp22.33UniSTS
Cytogenetic MapYp11.3UniSTS
Cytogenetic Map2q12.1UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map3q26.32UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map3p25.1UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map5q12-q13UniSTS
Cytogenetic Map6p23UniSTS
Cytogenetic Map20p12.3-p11.21UniSTS
Cytogenetic Map17q11.2-q12UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map10q23-q24UniSTS
Cytogenetic Map14q21.3UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map12q13-q14UniSTS
Cytogenetic Map6q14.1UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic MapXp22.2UniSTS
Cytogenetic Map1p31UniSTS
Cytogenetic Map15q15-q21.1UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map2q33.3UniSTS
Cytogenetic Map11q22.1UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map21p11.1UniSTS
Cytogenetic Map14q23.2UniSTS
Cytogenetic Map6p22.3-p22.1UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map6q15UniSTS
Cytogenetic MapXq25-q26.3UniSTS
Cytogenetic Map10q22.3UniSTS
Cytogenetic Map12q24.31-q24.32UniSTS
Cytogenetic Map16p12.3UniSTS
Cytogenetic Map9q33.2UniSTS
Cytogenetic Map15q23UniSTS
Cytogenetic Map12p12.2-p11.2UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic MapXp11UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map3q21UniSTS
Cytogenetic Map20q13.2UniSTS
Cytogenetic Map10q26UniSTS
Cytogenetic Map6q22.31UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map22q13UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map18p11.32UniSTS
Cytogenetic Map12q15UniSTS
Cytogenetic MapXq22.3UniSTS
Cytogenetic Map2p25.3UniSTS
Cytogenetic Map16q21UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map3q13.13UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map4p13UniSTS
Cytogenetic Map16p12.1UniSTS
Cytogenetic Map14q32.11UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map16q12.1UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map20q13.1UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map10q23.33UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map9p24.1-p23UniSTS
Cytogenetic Map15q22UniSTS
Cytogenetic Map6p25UniSTS
Cytogenetic MapXq12-q13UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map14q23UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map1q42.1-q43UniSTS
Cytogenetic Map7q31.1-q31.3UniSTS
Cytogenetic Map20q11.21UniSTS
Cytogenetic Map20q12-q13.12UniSTS
Cytogenetic Map1q24-q25.3UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map1p13.2UniSTS
Cytogenetic Map2p13.3UniSTS
Cytogenetic Map6q25.1-q26UniSTS
Cytogenetic Map12q13.11-q14.3UniSTS
Cytogenetic Map7p11UniSTS
Cytogenetic Map12p11.22UniSTS
Cytogenetic Map17q23.1UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map9p11UniSTS
Cytogenetic Map6p24.3UniSTS
Cytogenetic Map9p24.1UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map6p22.2UniSTS
Cytogenetic Map12q24.2-q24.31UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map11p11.11UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map11q14.1UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map15q22-q23UniSTS
Cytogenetic Map9p21UniSTS
Cytogenetic Map15q13.1UniSTS
Cytogenetic Map15q22-qterUniSTS
Cytogenetic Map10q25UniSTS
Cytogenetic Map6p22.3UniSTS
Cytogenetic Map6p25.2UniSTS
Cytogenetic Map5p15.1UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map22q13.31UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map14q24.1UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map18q11.2UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map11q24UniSTS
Cytogenetic Map2q23.3UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map18q23UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map7p21.1UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map8p11.2UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map2q21.2UniSTS
Cytogenetic Map15q13.3UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map19p13.2-cenUniSTS
Cytogenetic Map19p13.3-p13.2UniSTS
Cytogenetic Map13q32.3UniSTS
Cytogenetic Map9q33UniSTS
Cytogenetic Map1p36-p35UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map12q23UniSTS
Cytogenetic Map21q22.13UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map7q31.1-q31.2UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map4q25-q27UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic MapXq26.2UniSTS
Cytogenetic Map8q13.2UniSTS
Cytogenetic Map8q13.1UniSTS
Cytogenetic Map8q22.2UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map5q23.1UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map3p26.1UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic MapXq21.3UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map20p11UniSTS
Cytogenetic Map6p12.3UniSTS
Cytogenetic Map5p13.1-p12UniSTS
Cytogenetic Map1p36.22UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map3p21.1-p14.3UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map10q24.31UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map13q12.11UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map13q14.13UniSTS
Cytogenetic Map11p15UniSTS
Cytogenetic Map6q14.3-q16.1UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic Map1p32-p31UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map8p11UniSTS
Cytogenetic Map6q25UniSTS
Cytogenetic Map8p11.23UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map7q35UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map16p12UniSTS
Cytogenetic Map6q14.3UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map8p12UniSTS
Cytogenetic Map13q12.2UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map6p21.2UniSTS
Cytogenetic Map18q21.1UniSTS
Cytogenetic Map10p11.21UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map3p26UniSTS
Cytogenetic Map9q22.3UniSTS
Cytogenetic Map17q21.1-q21.3UniSTS
Cytogenetic Map6q11.1UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map3q21.1UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map22q13.1-q13.2UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map9q32-q33.3UniSTS
Cytogenetic Map8q21.2UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map12p13.2-p12.3UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map5q11.2UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map18q21.32UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map15q26.2UniSTS
Cytogenetic Map14q22.1UniSTS
Cytogenetic Map5p15.2UniSTS
Cytogenetic Map12q23.1UniSTS
Cytogenetic Map10q24.2UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map5p13UniSTS
Cytogenetic Map16q23.2UniSTS
Cytogenetic Map10q24-q25UniSTS
Cytogenetic Map7p11.1UniSTS
Cytogenetic Map14q11.2-q21UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map10q21-q22UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic Map10q23.31UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map2p24.1UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map7p13-p11.1UniSTS
Cytogenetic Map7q21.1-q22UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map2q32.1UniSTS
Cytogenetic Map5p14.3UniSTS
Cytogenetic MapXp22.13UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map15qUniSTS
Cytogenetic Map7qUniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map10q23UniSTS
Cytogenetic Map5p12UniSTS
Cytogenetic Map11p11.2UniSTS
Cytogenetic Map10q11.21UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map13q22.1UniSTS
Cytogenetic Map15q21.2UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map9p13.1UniSTS
Cytogenetic Map9q34.13UniSTS
D7S2557  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7p21.2UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:686
Count of miRNA genes:488
Interacting mature miRNAs:529
Transcripts:ENST00000342526, ENST00000407277, ENST00000418075, ENST00000498264
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 15 293 293 5 293 23 1 8 53 7 11
Low 558 823 784 164 176 153 2153 155 1041 227 521 730 15 1198 1279 1
Below cutoff 1759 1762 549 160 718 13 2151 2001 2562 95 756 770 153 6 1502 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001004320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006715730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006715731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011515402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017012204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001744759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC004452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC006458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC012061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC091789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC099412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC099651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK131284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC108676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH236948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF458383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF458385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF458386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ534765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000342526   ⟹   ENSP00000341662
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl715,200,317 - 15,562,015 (-)Ensembl
RefSeq Acc Id: ENST00000407277   ⟹   ENSP00000385742
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl715,306,235 - 15,366,187 (-)Ensembl
RefSeq Acc Id: ENST00000418075   ⟹   ENSP00000394412
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl715,358,214 - 15,366,222 (-)Ensembl
RefSeq Acc Id: ENST00000498264
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl715,394,113 - 15,396,594 (-)Ensembl
RefSeq Acc Id: NM_001004320   ⟹   NP_001004320
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38715,200,317 - 15,562,015 (-)NCBI
GRCh37715,239,943 - 15,601,640 (-)RGD
Build 36715,206,468 - 15,568,165 (-)NCBI Archive
Celera715,219,639 - 15,581,346 (-)RGD
HuRef715,123,252 - 15,486,473 (-)RGD
CHM1_1715,239,321 - 15,601,040 (-)NCBI
CRA_TCAGchr7v2715,291,248 - 15,654,751 (-)ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006715730   ⟹   XP_006715793
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38715,306,235 - 15,562,015 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006715731   ⟹   XP_006715794
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38715,301,398 - 15,562,015 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011515402   ⟹   XP_011513704
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38715,158,404 - 15,562,015 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017012204   ⟹   XP_016867693
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38715,158,178 - 15,562,015 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001744759
RefSeq Status:
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38715,117,223 - 15,562,015 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001004320   ⟸   NM_001004320
- UniProtKB: Q6ZNB7 (UniProtKB/Swiss-Prot),   X5D773 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006715794   ⟸   XM_006715731
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006715793   ⟸   XM_006715730
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011513704   ⟸   XM_011515402
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_016867693   ⟸   XM_017012204
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSP00000394412   ⟸   ENST00000418075
RefSeq Acc Id: ENSP00000385742   ⟸   ENST00000407277
RefSeq Acc Id: ENSP00000341662   ⟸   ENST00000342526
Protein Domains
Fatty acid hydroxylase

Promoters
RGD ID:7209973
Promoter ID:EPDNEW_H10732
Type:initiation region
Name:AGMO_1
Description:alkylglycerol monooxygenase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38715,562,015 - 15,562,075EPDNEW

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh37/hg19 7p21.2(chr7:15424383-15534832)x3 copy number gain VATER association [RCV000521183] Chr7:15424383..15534832 [GRCh37]
Chr7:7p21.2
likely benign
GRCh38/hg38 7p22.3-14.1(chr7:54185-41875885)x3 copy number gain See cases [RCV000051159] Chr7:54185..41875885 [GRCh38]
Chr7:54185..41915483 [GRCh37]
Chr7:149268..41882008 [NCBI36]
Chr7:7p22.3-14.1
pathogenic
GRCh38/hg38 7p21.3-15.3(chr7:8274775-21988311)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052280]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052280]|See cases [RCV000052280] Chr7:8274775..21988311 [GRCh38]
Chr7:8314405..22027929 [GRCh37]
Chr7:8280930..21994454 [NCBI36]
Chr7:7p21.3-15.3
pathogenic
GRCh38/hg38 7p21.3-21.1(chr7:9975653-19356878)x1 copy number loss See cases [RCV000052281] Chr7:9975653..19356878 [GRCh38]
Chr7:10015280..19396501 [GRCh37]
Chr7:9981805..19363026 [NCBI36]
Chr7:7p21.3-21.1
pathogenic
GRCh38/hg38 7p21.2-21.1(chr7:14959516-19467349)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052288]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052288]|See cases [RCV000052288] Chr7:14959516..19467349 [GRCh38]
Chr7:14999141..19506972 [GRCh37]
Chr7:14965666..19473497 [NCBI36]
Chr7:7p21.2-21.1
pathogenic
GRCh38/hg38 7p21.2-21.1(chr7:15133711-19642829)x1 copy number loss See cases [RCV000052289] Chr7:15133711..19642829 [GRCh38]
Chr7:15173336..19682452 [GRCh37]
Chr7:15139861..19648977 [NCBI36]
Chr7:7p21.2-21.1
pathogenic
GRCh38/hg38 7p22.3-q36.3(chr7:53985-159282531)x1 copy number loss See cases [RCV000052250] Chr7:53985..159282531 [GRCh38]
Chr7:53985..159075220 [GRCh37]
Chr7:149068..158767981 [NCBI36]
Chr7:7p22.3-q36.3
pathogenic
GRCh38/hg38 7p22.3-15.3(chr7:53985-24361531)x3 copy number gain See cases [RCV000053528] Chr7:53985..24361531 [GRCh38]
Chr7:53985..24401150 [GRCh37]
Chr7:149068..24367675 [NCBI36]
Chr7:7p22.3-15.3
pathogenic
GRCh38/hg38 7p22.3-14.2(chr7:54185-37089712)x3 copy number gain See cases [RCV000053530] Chr7:54185..37089712 [GRCh38]
Chr7:54185..37129317 [GRCh37]
Chr7:149268..37095842 [NCBI36]
Chr7:7p22.3-14.2
pathogenic
NM_001004320.1(AGMO):c.409+22790A>G single nucleotide variant Lung cancer [RCV000105905] Chr7:15521982 [GRCh38]
Chr7:15561607 [GRCh37]
Chr7:7p21.2
uncertain significance
GRCh38/hg38 7p21.2-21.1(chr7:14904894-16925094)x1 copy number loss See cases [RCV000133737] Chr7:14904894..16925094 [GRCh38]
Chr7:14944519..16964718 [GRCh37]
Chr7:14911044..16931243 [NCBI36]
Chr7:7p21.2-21.1
pathogenic
GRCh38/hg38 7p22.3-q36.3(chr7:54185-159282390)x1 copy number loss See cases [RCV000135401] Chr7:54185..159282390 [GRCh38]
Chr7:54185..159075079 [GRCh37]
Chr7:149268..158767840 [NCBI36]
Chr7:7p22.3-q36.3
pathogenic
GRCh38/hg38 7p22.3-15.2(chr7:54185-26827634)x3 copy number gain See cases [RCV000136557] Chr7:54185..26827634 [GRCh38]
Chr7:54185..26867253 [GRCh37]
Chr7:149268..26833778 [NCBI36]
Chr7:7p22.3-15.2
pathogenic
GRCh38/hg38 7p21.2-21.1(chr7:13966197-18321354)x1 copy number loss See cases [RCV000136932] Chr7:13966197..18321354 [GRCh38]
Chr7:14005822..18360977 [GRCh37]
Chr7:13972347..18327502 [NCBI36]
Chr7:7p21.2-21.1
pathogenic
GRCh38/hg38 7p22.1-15.2(chr7:5682209-27230311)x3 copy number gain See cases [RCV000136649] Chr7:5682209..27230311 [GRCh38]
Chr7:5721840..27269930 [GRCh37]
Chr7:5688366..27236455 [NCBI36]
Chr7:7p22.1-15.2
pathogenic
GRCh38/hg38 7p21.3-21.2(chr7:13262814-15234164)x3 copy number gain See cases [RCV000136672] Chr7:13262814..15234164 [GRCh38]
Chr7:13302439..15273789 [GRCh37]
Chr7:13268964..15240314 [NCBI36]
Chr7:7p21.3-21.2
uncertain significance
GRCh38/hg38 7p22.3-15.3(chr7:45130-25221165)x3 copy number gain See cases [RCV000137824] Chr7:45130..25221165 [GRCh38]
Chr7:45130..25260784 [GRCh37]
Chr7:140213..25227309 [NCBI36]
Chr7:7p22.3-15.3
pathogenic
GRCh38/hg38 7p21.2-15.3(chr7:15533812-24851432)x1 copy number loss See cases [RCV000137924] Chr7:15533812..24851432 [GRCh38]
Chr7:15573437..24891051 [GRCh37]
Chr7:15539962..24857576 [NCBI36]
Chr7:7p21.2-15.3
pathogenic
GRCh38/hg38 7p21.2(chr7:15533812-15855669)x1 copy number loss See cases [RCV000140844] Chr7:15533812..15855669 [GRCh38]
Chr7:15573437..15895294 [GRCh37]
Chr7:15539962..15861819 [NCBI36]
Chr7:7p21.2
likely benign|uncertain significance
GRCh38/hg38 7p22.3-15.2(chr7:1698124-27207295)x3 copy number gain See cases [RCV000143060] Chr7:1698124..27207295 [GRCh38]
Chr7:1737760..27246914 [GRCh37]
Chr7:1704286..27213439 [NCBI36]
Chr7:7p22.3-15.2
pathogenic
GRCh38/hg38 7p21.3-21.2(chr7:11122492-16479303)x1 copy number loss See cases [RCV000142652] Chr7:11122492..16479303 [GRCh38]
Chr7:11162119..16518928 [GRCh37]
Chr7:11128644..16485453 [NCBI36]
Chr7:7p21.3-21.2
pathogenic
GRCh38/hg38 7p21.3-15.2(chr7:10610069-25760560)x1 copy number loss See cases [RCV000142708] Chr7:10610069..25760560 [GRCh38]
Chr7:10649696..25800180 [GRCh37]
Chr7:10616221..25766705 [NCBI36]
Chr7:7p21.3-15.2
pathogenic
GRCh38/hg38 7p21.2(chr7:14844332-15574557)x3 copy number gain See cases [RCV000143528] Chr7:14844332..15574557 [GRCh38]
Chr7:14883957..15614182 [GRCh37]
Chr7:14850482..15580707 [NCBI36]
Chr7:7p21.2
uncertain significance
GRCh38/hg38 7p22.3-15.2(chr7:43360-27196404)x3 copy number gain See cases [RCV000143586] Chr7:43360..27196404 [GRCh38]
Chr7:43360..27236023 [GRCh37]
Chr7:138443..27202548 [NCBI36]
Chr7:7p22.3-15.2
pathogenic
NC_000007.14:g.15194696C>G single nucleotide variant Lung cancer [RCV000105830] Chr7:15194696 [GRCh38]
Chr7:15234321 [GRCh37]
Chr7:7p21.2
uncertain significance
NM_001004320.2(AGMO):c.701A>G (p.Lys234Arg) single nucleotide variant not provided [RCV000594903] Chr7:15390881 [GRCh38]
Chr7:15430506 [GRCh37]
Chr7:7p21.2
uncertain significance
GRCh37/hg19 7p22.3-21.1(chr7:43360-17656861)x3 copy number gain See cases [RCV000449347] Chr7:43360..17656861 [GRCh37]
Chr7:7p22.3-21.1
pathogenic
TMEM106B-BRAF fusion deletion Pleomorphic xanthoastrocytoma [RCV000454357] Chr7:12258147..140494267 [GRCh37]
Chr7:7p21.3-q34
pathogenic
GRCh37/hg19 7p21.3-14.2(chr7:11562624-36395416)x3 copy number gain See cases [RCV000446478] Chr7:11562624..36395416 [GRCh37]
Chr7:7p21.3-14.2
pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43360-159119707)x1 copy number loss See cases [RCV000446044] Chr7:43360..159119707 [GRCh37]
Chr7:7p22.3-q36.3
pathogenic
GRCh37/hg19 7p21.2(chr7:15118871-15263613)x1 copy number loss See cases [RCV000446602] Chr7:15118871..15263613 [GRCh37]
Chr7:7p21.2
uncertain significance
GRCh37/hg19 7p21.2(chr7:15583087-15626825)x1 copy number loss See cases [RCV000445724] Chr7:15583087..15626825 [GRCh37]
Chr7:7p21.2
pathogenic|likely benign
GRCh37/hg19 7p21.2(chr7:15406533-15466967)x1 copy number loss See cases [RCV000447745] Chr7:15406533..15466967 [GRCh37]
Chr7:7p21.2
uncertain significance
GRCh37/hg19 7p21.2(chr7:15581329-15626825)x1 copy number loss See cases [RCV000448082] Chr7:15581329..15626825 [GRCh37]
Chr7:7p21.2
uncertain significance
GRCh37/hg19 7p21.3-12.1(chr7:11048840-52863626)x3 copy number gain See cases [RCV000512091] Chr7:11048840..52863626 [GRCh37]
Chr7:7p21.3-12.1
pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43361-159119707) copy number gain See cases [RCV000510686] Chr7:43361..159119707 [GRCh37]
Chr7:7p22.3-q36.3
pathogenic
GRCh37/hg19 7p22.3-15.3(chr7:43360-23674928)x3 copy number gain See cases [RCV000510652] Chr7:43360..23674928 [GRCh37]
Chr7:7p22.3-15.3
pathogenic
GRCh37/hg19 7p22.3-14.3(chr7:704573-29257946)x3 copy number gain See cases [RCV000510275] Chr7:704573..29257946 [GRCh37]
Chr7:7p22.3-14.3
pathogenic
NM_001004320.2(AGMO):c.1263+8del deletion not specified [RCV000504212] Chr7:15365506 [GRCh38]
Chr7:15405131 [GRCh37]
Chr7:7p21.2
uncertain significance
GRCh37/hg19 7p21.2(chr7:14993073-15253982)x1 copy number loss See cases [RCV000510312] Chr7:14993073..15253982 [GRCh37]
Chr7:7p21.2
likely benign
NM_001004320.2(AGMO):c.653C>T (p.Pro218Leu) single nucleotide variant not specified [RCV000502432] Chr7:15394136 [GRCh38]
Chr7:15433761 [GRCh37]
Chr7:7p21.2
uncertain significance
NM_001004320.2(AGMO):c.148T>A (p.Leu50Met) single nucleotide variant not specified [RCV000500691] Chr7:15560250 [GRCh38]
Chr7:15599875 [GRCh37]
Chr7:7p21.2
uncertain significance
GRCh37/hg19 7p21.2-21.1(chr7:14675063-18907030)x1 copy number loss See cases [RCV000511411] Chr7:14675063..18907030 [GRCh37]
Chr7:7p21.2-21.1
likely pathogenic
GRCh37/hg19 7p21.3-21.1(chr7:7660104-18400293)x3 copy number gain See cases [RCV000511575] Chr7:7660104..18400293 [GRCh37]
Chr7:7p21.3-21.1
uncertain significance
GRCh37/hg19 7p22.3-q36.3(chr7:43361-159119707)x3 copy number gain See cases [RCV000511549] Chr7:43361..159119707 [GRCh37]
Chr7:7p22.3-q36.3
pathogenic
NM_001004320.2(AGMO):c.1213C>T (p.Arg405Ter) single nucleotide variant not provided [RCV000595044] Chr7:15365564 [GRCh38]
Chr7:15405189 [GRCh37]
Chr7:7p21.2
conflicting interpretations of pathogenicity|uncertain significance
GRCh37/hg19 7p21.2(chr7:14477106-15458630)x3 copy number gain not provided [RCV000682878] Chr7:14477106..15458630 [GRCh37]
Chr7:7p21.2
likely benign
GRCh37/hg19 7p21.2(chr7:14584596-16342834)x3 copy number gain not provided [RCV000682890] Chr7:14584596..16342834 [GRCh37]
Chr7:7p21.2
uncertain significance
GRCh37/hg19 7p21.2-15.3(chr7:14544155-21719929)x3 copy number gain not provided [RCV000682908] Chr7:14544155..21719929 [GRCh37]
Chr7:7p21.2-15.3
pathogenic
GRCh37/hg19 7p21.2(chr7:15586378-16262103)x1 copy number loss not provided [RCV000682861] Chr7:15586378..16262103 [GRCh37]
Chr7:7p21.2
uncertain significance
GRCh37/hg19 7p21.2(chr7:15118760-15263613)x1 copy number loss not provided [RCV000845751] Chr7:15118760..15263613 [GRCh37]
Chr7:7p21.2
uncertain significance
NM_001004320.2(AGMO):c.706_708del (p.Tyr236del) deletion not provided [RCV001537591] Chr7:15390874..15390876 [GRCh38]
Chr7:15430499..15430501 [GRCh37]
Chr7:7p21.2
uncertain significance
GRCh37/hg19 7p22.3-q36.3(chr7:10704-159122532)x3 copy number gain not provided [RCV000746278] Chr7:10704..159122532 [GRCh37]
Chr7:7p22.3-q36.3
pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:44935-159126310)x3 copy number gain not provided [RCV000746280] Chr7:44935..159126310 [GRCh37]
Chr7:7p22.3-q36.3
pathogenic
GRCh37/hg19 7p21.2(chr7:15116757-15264585)x1 copy number loss not provided [RCV000746511] Chr7:15116757..15264585 [GRCh37]
Chr7:7p21.2
benign
GRCh37/hg19 7p21.2(chr7:15249864-15284032)x3 copy number gain not provided [RCV000746513] Chr7:15249864..15284032 [GRCh37]
Chr7:7p21.2
benign
GRCh37/hg19 7p21.2(chr7:15404211-15425411)x1 copy number loss not provided [RCV000746514] Chr7:15404211..15425411 [GRCh37]
Chr7:7p21.2
benign
GRCh37/hg19 7p21.2(chr7:15405219-15437962)x3 copy number gain not provided [RCV000746515] Chr7:15405219..15437962 [GRCh37]
Chr7:7p21.2
benign
GRCh37/hg19 7p21.2(chr7:15414734-15417899)x1 copy number loss not provided [RCV000746516] Chr7:15414734..15417899 [GRCh37]
Chr7:7p21.2
benign
GRCh37/hg19 7p21.2(chr7:15424383-15458194)x3 copy number gain not provided [RCV000746517] Chr7:15424383..15458194 [GRCh37]
Chr7:7p21.2
benign
GRCh37/hg19 7p21.2(chr7:15434065-15549468)x1 copy number loss not provided [RCV000746518] Chr7:15434065..15549468 [GRCh37]
Chr7:7p21.2
benign
NM_001004320.2(AGMO):c.22C>G (p.Gln8Glu) single nucleotide variant not provided [RCV000947002] Chr7:15561824 [GRCh38]
Chr7:15601449 [GRCh37]
Chr7:7p21.2
benign
NM_001004320.2(AGMO):c.429C>T (p.Ala143=) single nucleotide variant not provided [RCV000972761] Chr7:15431089 [GRCh38]
Chr7:15470714 [GRCh37]
Chr7:7p21.2
benign
NM_001004320.2(AGMO):c.26A>T (p.Asp9Val) single nucleotide variant not provided [RCV000969213] Chr7:15561820 [GRCh38]
Chr7:15601445 [GRCh37]
Chr7:7p21.2
benign
GRCh37/hg19 7p22.3-q36.3(chr7:10365-159119707)x3 copy number gain not provided [RCV000848126] Chr7:10365..159119707 [GRCh37]
Chr7:7p22.3-q36.3
pathogenic
GRCh37/hg19 7p21.2-21.1(chr7:13886653-20267202)x1 copy number loss not provided [RCV001005911] Chr7:13886653..20267202 [GRCh37]
Chr7:7p21.2-21.1
pathogenic
GRCh37/hg19 7p21.2(chr7:15286394-15487637)x1 copy number loss not provided [RCV001005915] Chr7:15286394..15487637 [GRCh37]
Chr7:7p21.2
uncertain significance
GRCh37/hg19 7p21.2(chr7:15581329-15626825)x1 copy number loss not provided [RCV000848327] Chr7:15581329..15626825 [GRCh37]
Chr7:7p21.2
uncertain significance
GRCh37/hg19 7p21.2(chr7:15217244-15275223)x1 copy number loss not provided [RCV000849447] Chr7:15217244..15275223 [GRCh37]
Chr7:7p21.2
uncertain significance
GRCh37/hg19 7p21.2(chr7:15581329-15626825)x1 copy number loss not provided [RCV000846824] Chr7:15581329..15626825 [GRCh37]
Chr7:7p21.2
uncertain significance
GRCh37/hg19 7p21.2(chr7:15586378-16252720)x3 copy number gain not provided [RCV000846993] Chr7:15586378..16252720 [GRCh37]
Chr7:7p21.2
uncertain significance
GRCh37/hg19 7p21.2(chr7:15397982-15563136)x1 copy number loss not provided [RCV000849245] Chr7:15397982..15563136 [GRCh37]
Chr7:7p21.2
uncertain significance
GRCh37/hg19 7p21.2(chr7:15581329-15621927)x1 copy number loss not provided [RCV000846965] Chr7:15581329..15621927 [GRCh37]
Chr7:7p21.2
uncertain significance
GRCh37/hg19 7p21.2(chr7:15581329-15614199)x1 copy number loss not provided [RCV000847474] Chr7:15581329..15614199 [GRCh37]
Chr7:7p21.2
uncertain significance
GRCh37/hg19 7p21.2(chr7:15581329-15626825)x3 copy number gain not provided [RCV000847608] Chr7:15581329..15626825 [GRCh37]
Chr7:7p21.2
uncertain significance
GRCh37/hg19 7p21.2(chr7:15354728-15575399)x1 copy number loss not provided [RCV001005916] Chr7:15354728..15575399 [GRCh37]
Chr7:7p21.2
uncertain significance
GRCh37/hg19 7p21.2(chr7:15117819-15263613)x1 copy number loss not provided [RCV000849817] Chr7:15117819..15263613 [GRCh37]
Chr7:7p21.2
uncertain significance
GRCh37/hg19 7p21.2(chr7:15581329-15614182)x1 copy number loss not provided [RCV000848403] Chr7:15581329..15614182 [GRCh37]
Chr7:7p21.2
uncertain significance
GRCh37/hg19 7p21.2(chr7:14350338-15586378)x3 copy number gain not provided [RCV000846253] Chr7:14350338..15586378 [GRCh37]
Chr7:7p21.2
uncertain significance
GRCh37/hg19 7p21.2(chr7:15581329-15638572)x1 copy number loss not provided [RCV001005917] Chr7:15581329..15638572 [GRCh37]
Chr7:7p21.2
likely benign|uncertain significance
GRCh37/hg19 7p22.3-21.1(chr7:43376-19520619)x3 copy number gain not provided [RCV000848100] Chr7:43376..19520619 [GRCh37]
Chr7:7p22.3-21.1
pathogenic
NM_001004320.2(AGMO):c.1221T>G (p.Gly407=) single nucleotide variant not provided [RCV000901623] Chr7:15365556 [GRCh38]
Chr7:15405181 [GRCh37]
Chr7:7p21.2
benign
NM_001004320.2(AGMO):c.92A>G (p.Gln31Arg) single nucleotide variant not provided [RCV000888996] Chr7:15561754 [GRCh38]
Chr7:15601379 [GRCh37]
Chr7:7p21.2
likely benign
NM_001004320.2(AGMO):c.519C>T (p.Phe173=) single nucleotide variant not provided [RCV000889587] Chr7:15418648 [GRCh38]
Chr7:15458273 [GRCh37]
Chr7:7p21.2
likely benign
NM_001004320.2(AGMO):c.60_61dup (p.Tyr21fs) duplication not provided [RCV000956924] Chr7:15561784..15561785 [GRCh38]
Chr7:15601409..15601410 [GRCh37]
Chr7:7p21.2
benign
GRCh37/hg19 7p21.2-21.1(chr7:14470668-20385165)x1 copy number loss Saethre-Chotzen syndrome [RCV001263216] Chr7:14470668..20385165 [GRCh37]
Chr7:7p21.2-21.1
pathogenic
GRCh37/hg19 7p21.2(chr7:15304967-15416687)x1 copy number loss not provided [RCV001259422] Chr7:15304967..15416687 [GRCh37]
Chr7:7p21.2
uncertain significance
NM_001004320.2(AGMO):c.712G>T (p.Gly238Cys) single nucleotide variant not provided [RCV001345979] Chr7:15390870 [GRCh38]
Chr7:15430495 [GRCh37]
Chr7:7p21.2
uncertain significance
Single allele deletion Kleefstra syndrome 2 [RCV001310226] Chr7:15199331..15209321 [GRCh38]
Chr7:15238956..15248946 [GRCh37]
Chr7:7p21.2
uncertain significance

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:33784 AgrOrtholog
COSMIC AGMO COSMIC
Ensembl Genes ENSG00000187546 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000341662 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000385742 UniProtKB/TrEMBL
  ENSP00000394412 UniProtKB/TrEMBL
Ensembl Transcript ENST00000342526 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000407277 UniProtKB/TrEMBL
  ENST00000418075 UniProtKB/TrEMBL
GTEx ENSG00000187546 GTEx
HGNC ID HGNC:33784 ENTREZGENE
Human Proteome Map AGMO Human Proteome Map
InterPro Fatty_acid_hydroxylase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:392636 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 392636 ENTREZGENE
OMIM 613738 OMIM
Pfam FA_hydroxylase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA162406334 PharmGKB
UniProt ALKMO_HUMAN UniProtKB/Swiss-Prot
  H0Y3V1_HUMAN UniProtKB/TrEMBL
  H7C0E0_HUMAN UniProtKB/TrEMBL
  Q6ZNB7 ENTREZGENE
  X5D773 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A4D114 UniProtKB/Swiss-Prot
  A6NCH5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 AGMO  alkylglycerol monooxygenase  TMEM195  transmembrane protein 195  Symbol and/or name change 5135510 APPROVED