Epb41l4b (erythrocyte membrane protein band 4.1 like 4B) - Rat Genome Database

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Gene: Epb41l4b (erythrocyte membrane protein band 4.1 like 4B) Ictidomys tridecemlineatus
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Symbol: Epb41l4b
Name: erythrocyte membrane protein band 4.1 like 4B
RGD ID: 12560409
Description: ENCODES a protein that exhibits cytoskeletal protein binding (inferred); INVOLVED IN actomyosin structure organization (ortholog); regulation of keratinocyte proliferation (ortholog); FOUND IN apical part of cell (inferred); cytoplasm (inferred); cytoskeleton (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: band 4.1-like protein 4B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947179,546,685 - 179,684,395 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365593,587,379 - 3,716,883 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365593,582,190 - 3,717,407 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Epb41l4bSquirrelactomyosin structure organization acts_upstream_of_or_withinISOEPB41L4B (Homo sapiens)9068941 PMID:22006950MGIPMID:22006950
Epb41l4bSquirrelactomyosin structure organization involved_inIEAPANTHER:PTN000589580 and PANTHER:PTN000589586150520179 TreeGrafterGO_REF:0000118
Epb41l4bSquirrelactomyosin structure organization involved_inIEAUniProtKB:Q9H329 and ensembl:ENSP00000363694150520179 EnsemblGO_REF:0000107
Epb41l4bSquirrelpositive regulation of cell adhesion involved_inIEAUniProtKB:Q9H329 and ensembl:ENSP00000363694150520179 EnsemblGO_REF:0000107
Epb41l4bSquirrelpositive regulation of gene expression involved_inIEAUniProtKB:Q9H329 and ensembl:ENSP00000363694150520179 EnsemblGO_REF:0000107
Epb41l4bSquirrelpositive regulation of keratinocyte migration involved_inIEAUniProtKB:Q9H329 and ensembl:ENSP00000363694150520179 EnsemblGO_REF:0000107
Epb41l4bSquirrelregulation of keratinocyte proliferation NOT|involved_inISOEPB41L4B (Homo sapiens)9068941 PMID:23664528UniProtPMID:23664528
Epb41l4bSquirrelwound healing involved_inIEAUniProtKB:Q9H329 and ensembl:ENSP00000363694150520179 EnsemblGO_REF:0000107

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Epb41l4bSquirrelapical part of cell located_inIEAUniProtKB:Q9H329 and ensembl:ENSP00000363694150520179 EnsemblGO_REF:0000107
Epb41l4bSquirrelcytoplasm located_inIEAUniProtKB:Q9H329 and ensembl:ENSP00000363694150520179 EnsemblGO_REF:0000107
Epb41l4bSquirrelcytoskeleton located_inIEAInterPro:IPR000299150520179 InterProGO_REF:0000002
Epb41l4bSquirrelcytoskeleton located_inIEAPANTHER:PTN000589580 and PANTHER:PTN000589586150520179 TreeGrafterGO_REF:0000118
Epb41l4bSquirrelcytosol located_inIEAUniProtKB:Q9H329 and ensembl:ENSP00000363694150520179 EnsemblGO_REF:0000107
Epb41l4bSquirrelplasma membrane located_inIEAUniProtKB:Q9H329 and ensembl:ENSP00000363694150520179 EnsemblGO_REF:0000107

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Epb41l4bSquirrelcytoskeletal protein binding enablesIEAInterPro:IPR000798150520179 InterProGO_REF:0000002
Epb41l4bSquirrelprotein binding enablesISOUniProtKB:Q6ZSZ59068941 PMID:22006950MGIPMID:22006950

PMID:22301074  



Epb41l4b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947179,546,685 - 179,684,395 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365593,587,379 - 3,716,883 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365593,582,190 - 3,717,407 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EPB41L4B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389109,171,974 - 109,321,059 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9109,171,974 - 109,321,059 (-)EnsemblGRCh38hg38GRCh38
GRCh379111,934,254 - 112,083,339 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369110,974,075 - 111,122,842 (-)NCBINCBI36Build 36hg18NCBI36
Celera982,433,463 - 82,582,331 (-)NCBICelera
Cytogenetic Map9q31.3NCBI
HuRef981,534,383 - 81,682,900 (-)NCBIHuRef
CHM1_19112,080,755 - 112,230,021 (-)NCBICHM1_1
T2T-CHM13v2.09121,341,055 - 121,490,407 (-)NCBIT2T-CHM13v2.0
Epb41l4b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39456,991,977 - 57,143,753 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl456,991,972 - 57,143,437 (-)EnsemblGRCm39 Ensembl
GRCm38456,991,972 - 57,143,168 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl456,991,972 - 57,143,437 (-)EnsemblGRCm38mm10GRCm38
MGSCv37457,074,598 - 57,156,028 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36457,089,660 - 57,251,234 (-)NCBIMGSCv36mm8
Celera456,971,790 - 57,053,159 (-)NCBICelera
Cytogenetic Map4B3NCBI
cM Map431.66NCBI
Epb41l4b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8576,486,886 - 76,647,752 (-)NCBIGRCr8
mRatBN7.2571,691,706 - 71,852,583 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl571,694,331 - 71,851,990 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx573,579,659 - 73,742,868 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0575,410,983 - 75,571,368 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0575,383,056 - 75,543,452 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0574,030,950 - 74,192,275 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl574,030,882 - 74,191,167 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0578,259,811 - 78,344,848 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4574,972,597 - 75,059,096 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera570,548,863 - 70,608,478 (-)NCBICelera
Celera570,618,652 - 70,703,659 (-)NCBICelera
Cytogenetic Map5q24NCBI
Epb41l4b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541917,686,882 - 17,823,605 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541917,686,096 - 17,821,884 (+)NCBIChiLan1.0ChiLan1.0
EPB41L4B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21130,086,890 - 30,235,815 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1930,089,255 - 30,239,746 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0980,324,948 - 80,401,283 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19108,496,690 - 108,650,645 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9108,499,267 - 108,604,576 (-)Ensemblpanpan1.1panPan2
EPB41L4B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11164,312,716 - 64,439,117 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1164,312,802 - 64,407,412 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1162,713,675 - 62,840,170 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01165,446,475 - 65,573,331 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1165,446,078 - 65,574,026 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11163,965,575 - 64,091,945 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01163,987,800 - 64,114,603 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01164,678,447 - 64,805,309 (-)NCBIUU_Cfam_GSD_1.0
EPB41L4B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1250,226,595 - 250,368,846 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11250,226,592 - 250,368,897 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21280,755,888 - 280,879,154 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EPB41L4B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11230,230,214 - 30,381,295 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1230,230,724 - 30,382,212 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603512,303,113 - 12,455,585 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Epb41l4b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247582,221,581 - 2,362,458 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247582,221,600 - 2,361,572 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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RefSeq Transcripts XM_021729410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040283816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000012230   ⟹   ENSSTOP00000010964
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365593,587,379 - 3,716,883 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000031546   ⟹   ENSSTOP00000026468
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365593,587,379 - 3,660,160 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000042662   ⟹   ENSSTOP00000026331
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365593,690,023 - 3,716,883 (+)Ensembl
RefSeq Acc Id: XM_040283816   ⟹   XP_040139750
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947179,546,685 - 179,684,395 (-)NCBI
Protein RefSeqs XP_040139750 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000010964.3
  ENSSTOP00000026331.1
  ENSSTOP00000026468.1
GenBank Protein KAG3287683 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040139750   ⟸   XM_040283816
- UniProtKB: I3MIS7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000010964   ⟸   ENSSTOT00000012230
Ensembl Acc Id: ENSSTOP00000026468   ⟸   ENSSTOT00000031546
Ensembl Acc Id: ENSSTOP00000026331   ⟸   ENSSTOT00000042662
FERM



1 to 40 of 40 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSTOG00000012217 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000012230.3 UniProtKB/TrEMBL
  ENSSTOT00000031546.1 UniProtKB/TrEMBL
  ENSSTOT00000042662.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.80.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
  Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 UniProtKB/TrEMBL
InterPro Band4.1-like4B UniProtKB/TrEMBL
  Band_41_domain UniProtKB/TrEMBL
  Ez/rad/moesin-like UniProtKB/TrEMBL
  FERM-adjacent UniProtKB/TrEMBL
  FERM/acyl-CoA-bd_prot_sf UniProtKB/TrEMBL
  FERM_2 UniProtKB/TrEMBL
  FERM_central UniProtKB/TrEMBL
  FERM_CS UniProtKB/TrEMBL
  FERM_domain UniProtKB/TrEMBL
  FERM_N UniProtKB/TrEMBL
  FERM_PH-like_C UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
NCBI Gene Epb41l4b ENTREZGENE
PANTHER 4.1 G PROTEIN UniProtKB/TrEMBL
  PTHR23280:SF18 UniProtKB/TrEMBL
Pfam FERM_C UniProtKB/TrEMBL
  FERM_M UniProtKB/TrEMBL
  FERM_N UniProtKB/TrEMBL
  PF08736 UniProtKB/TrEMBL
PRINTS BAND41 UniProtKB/TrEMBL
  ERMFAMILY UniProtKB/TrEMBL
PROSITE FERM_2 UniProtKB/TrEMBL
  FERM_3 UniProtKB/TrEMBL
SMART B41 UniProtKB/TrEMBL
  FERM_C UniProtKB/TrEMBL
  SM01195 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF47031 UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt A0A287CYI1_ICTTR UniProtKB/TrEMBL
  A0A287CYW8_ICTTR UniProtKB/TrEMBL
  I3MIS7 ENTREZGENE, UniProtKB/TrEMBL
1 to 40 of 40 rows