Epb41l4b (erythrocyte membrane protein band 4.1 like 4B) - Rat Genome Database

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Gene: Epb41l4b (erythrocyte membrane protein band 4.1 like 4B) Heterocephalus glaber
Analyze
Symbol: Epb41l4b
Name: erythrocyte membrane protein band 4.1 like 4B
RGD ID: 18909518
Description: ENCODES a protein that exhibits cytoskeletal protein binding (inferred); INVOLVED IN actomyosin structure organization (ortholog); positive regulation of cell adhesion (ortholog); positive regulation of gene expression (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN apical part of cell (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: band 4.1-like protein 4B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247582,221,581 - 2,362,458 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247582,221,600 - 2,361,572 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Epb41l4b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247582,221,581 - 2,362,458 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247582,221,600 - 2,361,572 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
EPB41L4B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389109,171,974 - 109,321,059 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9109,171,974 - 109,321,059 (-)EnsemblGRCh38hg38GRCh38
GRCh379111,934,254 - 112,083,339 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369110,974,075 - 111,122,842 (-)NCBINCBI36Build 36hg18NCBI36
Celera982,433,463 - 82,582,331 (-)NCBICelera
Cytogenetic Map9q31.3NCBI
HuRef981,534,383 - 81,682,900 (-)NCBIHuRef
CHM1_19112,080,755 - 112,230,021 (-)NCBICHM1_1
T2T-CHM13v2.09121,341,055 - 121,490,407 (-)NCBIT2T-CHM13v2.0
Epb41l4b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39456,991,977 - 57,143,753 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl456,991,972 - 57,143,437 (-)EnsemblGRCm39 Ensembl
GRCm38456,991,972 - 57,143,168 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl456,991,972 - 57,143,437 (-)EnsemblGRCm38mm10GRCm38
MGSCv37457,074,598 - 57,156,028 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36457,089,660 - 57,251,234 (-)NCBIMGSCv36mm8
Celera456,971,790 - 57,053,159 (-)NCBICelera
Cytogenetic Map4B3NCBI
cM Map431.66NCBI
Epb41l4b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8576,486,886 - 76,647,752 (-)NCBIGRCr8
mRatBN7.2571,691,706 - 71,852,583 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl571,694,331 - 71,851,990 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx573,579,659 - 73,742,868 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0575,410,983 - 75,571,368 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0575,383,056 - 75,543,452 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0574,030,950 - 74,192,275 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl574,030,882 - 74,191,167 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0578,259,811 - 78,344,848 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4574,972,597 - 75,059,096 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera570,548,863 - 70,608,478 (-)NCBICelera
Celera570,618,652 - 70,703,659 (-)NCBICelera
Cytogenetic Map5q24NCBI
Epb41l4b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541917,686,882 - 17,823,605 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541917,686,096 - 17,821,884 (+)NCBIChiLan1.0ChiLan1.0
EPB41L4B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21130,086,890 - 30,235,815 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1930,089,255 - 30,239,746 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0980,324,948 - 80,401,283 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19108,496,690 - 108,650,645 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9108,499,267 - 108,604,576 (-)Ensemblpanpan1.1panPan2
EPB41L4B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11164,312,716 - 64,439,117 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1164,312,802 - 64,407,412 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1162,713,675 - 62,840,170 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01165,446,475 - 65,573,331 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1165,446,078 - 65,574,026 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11163,965,575 - 64,091,945 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01163,987,800 - 64,114,603 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01164,678,447 - 64,805,309 (-)NCBIUU_Cfam_GSD_1.0
Epb41l4b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947179,546,685 - 179,684,395 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365593,587,379 - 3,716,883 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365593,582,190 - 3,717,407 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EPB41L4B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1250,226,595 - 250,368,846 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11250,226,592 - 250,368,897 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21280,755,888 - 280,879,154 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EPB41L4B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11230,230,214 - 30,381,295 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1230,230,724 - 30,382,212 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603512,303,113 - 12,455,585 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000019120   ⟹   ENSHGLP00000018931
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247582,221,581 - 2,362,458 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000019121   ⟹   ENSHGLP00000018932
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247582,221,581 - 2,303,448 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000019122   ⟹   ENSHGLP00000018933
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247582,333,186 - 2,358,531 (+)Ensembl
RefSeq Acc Id: XM_004848147   ⟹   XP_004848204
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247582,221,600 - 2,361,572 (+)NCBI
RefSeq Acc Id: XM_004848149   ⟹   XP_004848206
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247582,221,600 - 2,303,301 (+)NCBI
RefSeq Acc Id: XM_013073431   ⟹   XP_012928885
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247582,221,600 - 2,361,572 (+)NCBI
RefSeq Acc Id: XM_013073432   ⟹   XP_012928886
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247582,221,600 - 2,361,572 (+)NCBI
RefSeq Acc Id: XM_021261148   ⟹   XP_021116807
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247582,221,600 - 2,361,572 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_012928885   ⟸   XM_013073431
- Peptide Label: isoform X1
- UniProtKB: G5BAC8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012928886   ⟸   XM_013073432
- Peptide Label: isoform X3
- UniProtKB: G5BAC8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021116807   ⟸   XM_021261148
- Peptide Label: isoform X4
- UniProtKB: G5BAC8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004848204   ⟸   XM_004848147
- Peptide Label: isoform X2
- UniProtKB: G5BAC8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004848206   ⟸   XM_004848149
- Peptide Label: isoform X5
RefSeq Acc Id: ENSHGLP00000018931   ⟸   ENSHGLT00000019120
RefSeq Acc Id: ENSHGLP00000018933   ⟸   ENSHGLT00000019122
RefSeq Acc Id: ENSHGLP00000018932   ⟸   ENSHGLT00000019121


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013577 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000019120 ENTREZGENE
  ENSHGLT00000019121 ENTREZGENE
Gene3D-CATH 1.20.80.10 UniProtKB/TrEMBL
  Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) UniProtKB/TrEMBL
InterPro Band_41_domain UniProtKB/TrEMBL
  Ez/rad/moesin-like UniProtKB/TrEMBL
  FERM/acyl-CoA-bd_prot_sf UniProtKB/TrEMBL
  FERM_2 UniProtKB/TrEMBL
  FERM_central UniProtKB/TrEMBL
  FERM_domain UniProtKB/TrEMBL
  FERM_N UniProtKB/TrEMBL
  FERM_PH-like_C UniProtKB/TrEMBL
  IPR014847 UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
NCBI Gene Epb41l4b ENTREZGENE
PANTHER 4.1 G PROTEIN UniProtKB/TrEMBL
  BAND 4.1-LIKE PROTEIN 4B UniProtKB/TrEMBL
Pfam FERM_C UniProtKB/TrEMBL
  FERM_M UniProtKB/TrEMBL
  FERM_N UniProtKB/TrEMBL
  PF08736 UniProtKB/TrEMBL
PRINTS BAND41 UniProtKB/TrEMBL
  ERMFAMILY UniProtKB/TrEMBL
PROSITE FERM_3 UniProtKB/TrEMBL
SMART B41 UniProtKB/TrEMBL
  FERM_C UniProtKB/TrEMBL
  SM01195 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  Second domain of FERM UniProtKB/TrEMBL
  Ubiquitin-like UniProtKB/TrEMBL
UniProt G5BAC8 ENTREZGENE, UniProtKB/TrEMBL