Znf326 (zinc finger protein 326) - Rat Genome Database

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Gene: Znf326 (zinc finger protein 326) Ictidomys tridecemlineatus
Analyze
Symbol: Znf326
Name: zinc finger protein 326
RGD ID: 12557456
Description: ENCODES a protein that exhibits DNA binding (inferred); RNA polymerase II complex binding (inferred); zinc ion binding (inferred); INVOLVED IN positive regulation of DNA-templated transcription (ortholog); FOUND IN DBIRD complex (inferred); nuclear matrix (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DBIRD complex subunit ZNF326
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058100,150,106 - 100,188,552 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365378,760,834 - 8,797,730 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365378,760,311 - 8,797,869 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Znf326SquirrelmRNA processing involved_inIEAUniProtKB-KW:KW-0507150520179 UniProtGO_REF:0000043
Znf326Squirrelpositive regulation of DNA-templated transcription acts_upstream_of_or_withinISORGD:16159239068941 PMID:10798446MGIPMID:10798446
Znf326Squirrelregulation of DNA-templated transcription elongation involved_inIEAUniProtKB:Q5BKZ1|ensembl:ENSP00000340796150520179 EnsemblGO_REF:0000107
Znf326Squirrelregulation of DNA-templated transcription elongation involved_inIEAPANTHER:PTN001385384150520179 TreeGrafterGO_REF:0000118
Znf326Squirrelregulation of RNA splicing involved_inIEAUniProtKB:Q5BKZ1|ensembl:ENSP00000340796150520179 EnsemblGO_REF:0000107
Znf326SquirrelRNA splicing involved_inIEAUniProtKB-KW:KW-0508150520179 UniProtGO_REF:0000043

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Znf326SquirrelDBIRD complex part_ofIEAUniProtKB:Q5BKZ1|ensembl:ENSP00000340796150520179 EnsemblGO_REF:0000107
Znf326SquirrelDBIRD complex part_ofIEAPANTHER:PTN001385384150520179 TreeGrafterGO_REF:0000118
Znf326Squirrelnuclear matrix located_inIEAUniProtKB-SubCell:SL-0181150520179 UniProtGO_REF:0000044
Znf326Squirrelnucleoplasm located_inIEAUniProtKB:Q5BKZ1|ensembl:ENSP00000340796150520179 EnsemblGO_REF:0000107
Znf326Squirrelnucleus located_inIEAInterPro:IPR007071150520179 InterProGO_REF:0000002
Znf326Squirrelnucleus located_inIEAPANTHER:PTN001385384150520179 TreeGrafterGO_REF:0000118
Znf326Squirrelnucleus located_inIEAUniProtKB-KW:KW-0539150520179 UniProtGO_REF:0000043

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Znf326SquirrelDNA binding enablesIEAInterPro:IPR007071150520179 InterProGO_REF:0000002
Znf326SquirrelDNA binding enablesIEAUniProtKB-KW:KW-0238150520179 UniProtGO_REF:0000043
Znf326Squirrelprotein binding enablesISOUniProtKB:Q8N1639068941 PMID:22446626UniProtPMID:22446626
Znf326Squirrelprotein binding enablesISOUniProtKB:O15131|UniProtKB:O75525|UniProtKB:P02549|UniProtKB:P13807|UniProtKB:P57678|UniProtKB:Q2NL989068941 PMID:32296183IntActPMID:32296183
Znf326Squirrelprotein binding enablesISOUniProtKB:O604779068941 PMID:22446626IntActPMID:22446626
Znf326SquirrelRNA polymerase II complex binding enablesIEAUniProtKB:Q5BKZ1|ensembl:ENSP00000340796150520179 EnsemblGO_REF:0000107
Znf326Squirrelzinc ion binding enablesIEAUniProtKB-KW:KW-0863150520179 UniProtGO_REF:0000043

PMID:22301074   PMID:30032202  



Znf326
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058100,150,106 - 100,188,552 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365378,760,834 - 8,797,730 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365378,760,311 - 8,797,869 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF326
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38189,995,110 - 90,035,533 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl189,995,110 - 90,035,533 (+)EnsemblGRCh38hg38GRCh38
GRCh37190,460,669 - 90,501,092 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36190,233,266 - 90,266,682 (+)NCBINCBI36Build 36hg18NCBI36
Celera188,706,370 - 88,739,792 (+)NCBICelera
Cytogenetic Map1p22.2NCBI
HuRef188,577,877 - 88,611,300 (+)NCBIHuRef
CHM1_1190,576,010 - 90,609,429 (+)NCBICHM1_1
T2T-CHM13v2.0189,838,332 - 89,878,758 (+)NCBIT2T-CHM13v2.0
Zfp326
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395106,024,422 - 106,063,684 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5106,024,431 - 106,063,684 (+)EnsemblGRCm39 Ensembl
GRCm385105,876,556 - 105,915,818 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5105,876,565 - 105,915,818 (+)EnsemblGRCm38mm10GRCm38
MGSCv375106,305,587 - 106,344,837 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365106,116,904 - 106,156,114 (+)NCBIMGSCv36mm8
Celera5102,957,510 - 103,029,034 (+)NCBICelera
Cytogenetic Map5E5NCBI
cM Map550.88NCBI
Zfp326
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8144,246,081 - 4,286,805 (-)NCBIGRCr8
mRatBN7.2143,941,210 - 3,980,419 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl143,941,958 - 3,980,384 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0144,998,530 - 5,006,759 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0145,016,764 - 5,036,663 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl144,998,539 - 5,033,942 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0144,976,313 - 5,028,404 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera144,091,649 - 4,144,131 (-)NCBICelera
Cytogenetic Map14p22NCBI
Znf326
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554234,145,998 - 4,178,320 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554234,145,169 - 4,178,409 (-)NCBIChiLan1.0ChiLan1.0
ZNF326
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21136,990,980 - 137,029,528 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11136,151,732 - 136,185,304 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0192,656,490 - 92,693,995 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1191,405,460 - 91,438,913 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl191,405,472 - 91,438,913 (+)Ensemblpanpan1.1panPan2
ZNF326
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1658,597,606 - 58,632,781 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl658,598,416 - 58,632,776 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha661,306,237 - 61,343,925 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0658,991,407 - 59,029,111 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl658,991,686 - 59,029,075 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1658,682,678 - 58,720,428 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0658,634,913 - 58,672,669 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0659,115,669 - 59,153,389 (-)NCBIUU_Cfam_GSD_1.0
LOC100737600
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4126,679,581 - 126,717,815 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14126,679,269 - 126,703,983 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24138,557,134 - 138,565,558 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF326
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12043,447,762 - 43,483,594 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2043,448,595 - 43,483,462 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603374,450,099 - 74,485,865 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf326
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247427,714,797 - 7,760,022 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247427,713,965 - 7,760,193 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.






Ensembl Acc Id: ENSSTOT00000005181   ⟹   ENSSTOP00000004650
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365378,760,834 - 8,797,730 (-)Ensembl
RefSeq Acc Id: XM_005327742   ⟹   XP_005327799
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405058100,150,106 - 100,188,552 (+)NCBI
SpeTri2.0NW_0049365378,760,325 - 8,797,869 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021728037   ⟹   XP_021583712
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405058100,152,114 - 100,188,552 (+)NCBI
SpeTri2.0NW_0049365378,760,325 - 8,797,869 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040288972   ⟹   XP_040144906
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405058100,152,114 - 100,188,552 (+)NCBI
RefSeq Acc Id: XM_040288973   ⟹   XP_040144907
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405058100,159,297 - 100,188,552 (+)NCBI
RefSeq Acc Id: XM_040288974   ⟹   XP_040144908
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405058100,159,297 - 100,188,552 (+)NCBI
Protein RefSeqs XP_005327799 (Get FASTA)   NCBI Sequence Viewer  
  XP_021583712 (Get FASTA)   NCBI Sequence Viewer  
  XP_040144906 (Get FASTA)   NCBI Sequence Viewer  
  XP_040144907 (Get FASTA)   NCBI Sequence Viewer  
  XP_040144908 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000004650.3
RefSeq Acc Id: XP_005327799   ⟸   XM_005327742
- Peptide Label: isoform X1
- UniProtKB: I3M5L5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021583712   ⟸   XM_021728037
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_040144906   ⟸   XM_040288972
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040144907   ⟸   XM_040288973
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040144908   ⟸   XM_040288974
- Peptide Label: isoform X3
C2H2 AKAP95-type



1 to 10 of 10 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSTOG00000005176 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000005181.3 UniProtKB/TrEMBL
InterPro AKAP95 UniProtKB/TrEMBL
  ZF_C2H2_AKAP95 UniProtKB/TrEMBL
NCBI Gene Znf326 ENTREZGENE
PANTHER DBIRD COMPLEX SUBUNIT ZNF326 UniProtKB/TrEMBL
  PTHR12190 UniProtKB/TrEMBL
Pfam AKAP95 UniProtKB/TrEMBL
PROSITE ZF_C2H2_AKAP95 UniProtKB/TrEMBL
UniProt I3M5L5 ENTREZGENE, UniProtKB/TrEMBL
1 to 10 of 10 rows