LOC100737600 (DBIRD complex subunit ZNF326)

Gene: LOC100737600 (DBIRD complex subunit ZNF326) Sus scrofa

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Symbol:

LOC100737600 (Ensembl: ZNF326)

Name:

DBIRD complex subunit ZNF326 (Ensembl:zinc finger protein 326)

RGD ID:

13870999

Description:

ENCODES a protein that exhibits zinc ion binding (ortholog); INVOLVED IN positive regulation of DNA-templated transcription (ortholog); FOUND IN nuclear matrix (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

zinc finger protein 326; ZNF326

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	126,679,581 - 126,717,815 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	126,679,269 - 126,703,983 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	138,557,134 - 138,565,558 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA processing (IEA)

positive regulation of DNA-templated transcription (ISO)

regulation of DNA-templated transcription elongation (IBA,IEA)

regulation of RNA splicing (IEA)

RNA splicing (IEA)

Cellular Component

DBIRD complex (IBA,IEA)

intracellular membrane-bounded organelle (IEA)

intracellular organelle (IEA)

nuclear matrix (ISO)

nucleoplasm (IEA)

nucleus (IBA,IEA)

Molecular Function

DNA binding (IEA)

metal ion binding (IEA)

RNA polymerase II complex binding (IEA)

zinc ion binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Variants

Variants in LOC100737600
690 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium	9	1	3	3		22	2	3	1
Low	1	3		2	2	1			2
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021090831	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU468656	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000063873 ⟹ ENSSSCP00000055996

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	4	126,679,581 - 126,715,250 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000077501 ⟹ ENSSSCP00000073643

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	4	126,679,581 - 126,706,816 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000095647 ⟹ ENSSSCP00000079484

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	4	126,705,389 - 126,717,815 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000105134 ⟹ ENSSSCP00000079325

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	4	126,679,581 - 126,706,887 (-)	Ensembl

RefSeq Acc Id:

XM_021090831 ⟹ XP_020946490

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	126,679,269 - 126,703,983 (-)	NCBI

Sequence:

show sequence

CCTGTAGGCTCTCGGGGGAGAGGAACGCCTGCTTATCCTGAAAGTGCGTTTGGAAGCAGAAACT
ATGATGCTTTTGGAGGACCATCAACAGGCAGAGGCCGAGGCCGAGGACATATGAGTGATTTTGG
AAGCATTCATAGACCTGGAATTGTTGTTGACTATCAAAACAAACCCACCAGTGTGACAGTTGCT
GCCGCAAGAGGAATAAAGAGAAAAATGATGCAACCATTTAATAAGCCTGGTGGAACCTTTATCA
AGAAACCCAAGCTGGCGAAACCTGTGGAGAAGATGAGCCTCAGCAAATCGCCCACAAAAACTGA
TCCTAAAAATGAAGAAGAAGAAAAGCGGAGAATTGAGGCTCGGCGAGAGAAGCAAAGGCGCAGA
AGAGAGAAAAACAGTGAGAAATATGGAGATGGATACAGAATGGCATTCACGTGTTCATTTTGTA
AATTTCGAACATTTGAAGAAAAAGATATTGAACTGCATCTGGAAAGTTCTTCACATCAGGAAAC
ATTAGATCATATTCAAAAACAAACCAAATTCGATAAAGTAGTTATGGAGTTTTTGCATGAATGT
ATGGTAAATAAATTCAAGAAAACATCTATTCGTAAGCAGCAGACAAATAGTCAAACAGAAGTAG
TCAAGGTAACTGAAAAGGACGTTATGGAAGGTGTTACTGCAGACGATCACATGATGAAAGTAGA
GACTGTTCACTGCAGCGCCTGCAGTGTCTACATCCCGGCTCTGCACAGCTCGGTCCAGCAGCAC
TTGAAGTCTCCTGACCACAGCAAAGGGAAGCAGGCTTATAAGGAACAAATAAAAAGGGAGAGTG
TCTTGACTGCTACAAGCATTTTAAATAACCCAATAGTGAAGGCACGATACGAACGTTTTGTTAA
GGGTGAGAATCCTTTTGAAATTCAGGATCAGTCCCAGGATCAGCAACTGGAAGGAGATGAGGAG
GAGGAAGAAAAGATGGACGAGCCTGTTGAAGAGGAGGAGGCGGAGGAGGAGGAGGAGGAGGCGG
ATTTGCCTGTCTCAAGCCAGGAAAATCCAATTGGCATTTATCTTCCACTTTCGGGGCTGGAGCC
GAACAAGAGAAGGTTGTTGAAACTGGAAAATGTGGAGCCCATCTAG

hide sequence

Protein Sequences


Protein RefSeqs	XP_020946490	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000055996.2
	ENSSSCP00000073643.2
	ENSSSCP00000079325.1

RefSeq Acc Id:

XP_020946490 ⟸ XM_021090831

- Sequence:

show sequence

MSDFGSIHRPGIVVDYQNKPTSVTVAAARGIKRKMMQPFNKPGGTFIKKPKLAKPVEKMSLSKS
PTKTDPKNEEEEKRRIEARREKQRRRREKNSEKYGDGYRMAFTCSFCKFRTFEEKDIELHLESS
SHQETLDHIQKQTKFDKVVMEFLHECMVNKFKKTSIRKQQTNSQTEVVKVTEKDVMEGVTADDH
MMKVETVHCSACSVYIPALHSSVQQHLKSPDHSKGKQAYKEQIKRESVLTATSILNNPIVKARY
ERFVKGENPFEIQDQSQDQQLEGDEEEEEKMDEPVEEEEAEEEEEEADLPVSSQENPIGIYLPL
SGLEPNKRRLLKLENVEPI

hide sequence

RefSeq Acc Id:

ENSSSCP00000073643 ⟸ ENSSSCT00000077501

RefSeq Acc Id:

ENSSSCP00000055996 ⟸ ENSSSCT00000063873

RefSeq Acc Id:

ENSSSCP00000079484 ⟸ ENSSSCT00000095647

RefSeq Acc Id:

ENSSSCP00000079325 ⟸ ENSSSCT00000105134

Protein Domains

C2H2 AKAP95-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000038253	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000063873.2	UniProtKB/TrEMBL
	ENSSSCT00000077501.2	UniProtKB/TrEMBL
	ENSSSCT00000105134.1	UniProtKB/TrEMBL
InterPro	AKAP95	UniProtKB/TrEMBL
	ZF_C2H2_AKAP95	UniProtKB/TrEMBL
NCBI Gene	LOC100737600	ENTREZGENE
PANTHER	DBIRD COMPLEX SUBUNIT ZNF326	UniProtKB/TrEMBL
	PTHR12190	UniProtKB/TrEMBL
Pfam	AKAP95	UniProtKB/TrEMBL
PROSITE	ZF_C2H2_AKAP95	UniProtKB/TrEMBL
UniProt	A0A287BHC7_PIG	UniProtKB/TrEMBL
	A0A5G2R8P7_PIG	UniProtKB/TrEMBL
	A0A8W4FJC7_PIG	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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