LOC101961066 (CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC101961066 (CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101961066
Name: CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1
RGD ID: 12527360
Description: ENCODES a protein that exhibits beta-galactoside (CMP) alpha-2,3-sialyltransferase activity (inferred); sialyltransferase activity (inferred); transferase activity (inferred); INVOLVED IN ganglioside biosynthetic process via lactosylceramide (inferred); protein glycosylation (inferred); sialylation (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN extracellular region (inferred); Golgi apparatus (inferred); Golgi cisterna membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome unknown C20orf173 homolog; chromosome unknown open reading frame, human C20orf173; CUNH20orf173
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640173,469,542 - 173,472,039 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365615,271,963 - 5,279,570 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC101961066
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640173,469,542 - 173,472,039 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365615,271,963 - 5,279,570 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C20orf173
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382035,520,741 - 35,529,652 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2035,523,186 - 35,529,652 (-)EnsemblGRCh38hg38GRCh38
GRCh372034,108,569 - 34,117,481 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362033,578,213 - 33,580,862 (-)NCBINCBI36Build 36hg18NCBI36
Build 342033,578,212 - 33,580,862NCBI
Celera2030,857,159 - 30,866,071 (-)NCBICelera
Cytogenetic Map20q11.22NCBI
HuRef2030,886,074 - 30,894,985 (-)NCBIHuRef
CHM1_12034,009,933 - 34,018,843 (-)NCBICHM1_1
T2T-CHM13v2.02037,241,634 - 37,250,546 (-)NCBIT2T-CHM13v2.0
6430550D23Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392155,831,465 - 155,850,315 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2155,815,199 - 155,849,897 (-)EnsemblGRCm39 Ensembl
GRCm382155,989,545 - 156,008,125 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2155,973,279 - 156,007,977 (-)EnsemblGRCm38mm10GRCm38
MGSCv372155,826,179 - 155,833,713 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362155,741,308 - 155,748,771 (-)NCBIMGSCv36mm8
Celera2161,934,307 - 161,941,841 (-)NCBICelera
Cytogenetic Map2H1NCBI
cM Map277.26NCBI
C3h20orf173
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83164,972,748 - 164,985,195 (-)NCBIGRCr8
mRatBN7.23144,514,060 - 144,524,979 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3144,519,930 - 144,524,920 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.03151,546,738 - 151,553,474 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3151,548,437 - 151,548,995 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.03157,912,018 - 157,918,070 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43146,411,621 - 146,412,464 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3143,239,990 - 143,246,726 (-)NCBICelera
Cytogenetic Map3q42NCBI
LOC102011130
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542225,895,181 - 25,897,125 (+)NCBIChiLan1.0ChiLan1.0
C21H20orf173
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22141,244,908 - 41,272,468 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12041,239,807 - 41,265,571 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02031,854,431 - 31,865,921 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12032,968,230 - 32,984,196 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2032,973,857 - 32,976,541 (-)Ensemblpanpan1.1panPan2
C24H20orf173
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12424,480,846 - 24,494,388 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2424,126,074 - 24,139,654 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02425,173,564 - 25,186,985 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12424,459,839 - 24,473,393 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02424,554,759 - 24,568,347 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02424,994,371 - 25,007,791 (-)NCBIUU_Cfam_GSD_1.0
C17H20orf173
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11738,873,344 - 38,877,219 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21743,994,733 - 43,997,607 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH20orf173
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248423,883,756 - 3,885,256 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_040275755   ⟹   XP_040131689
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640173,469,542 - 173,472,028 (-)NCBI
RefSeq Acc Id: XM_040275756   ⟹   XP_040131690
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640173,469,542 - 173,472,028 (-)NCBI
RefSeq Acc Id: XM_040275757   ⟹   XP_040131691
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640173,469,542 - 173,472,028 (-)NCBI
RefSeq Acc Id: XM_040275758   ⟹   XP_040131692
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640173,469,542 - 173,472,010 (-)NCBI
RefSeq Acc Id: XM_040275759   ⟹   XP_040131693
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640173,469,542 - 173,472,039 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040131689 (Get FASTA)   NCBI Sequence Viewer  
  XP_040131690 (Get FASTA)   NCBI Sequence Viewer  
  XP_040131691 (Get FASTA)   NCBI Sequence Viewer  
  XP_040131692 (Get FASTA)   NCBI Sequence Viewer  
  XP_040131693 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000011801.3
Reference Protein Sequences
RefSeq Acc Id: XP_040131693   ⟸   XM_040275759
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040131690   ⟸   XM_040275756
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040131689   ⟸   XM_040275755
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040131691   ⟸   XM_040275757
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040131692   ⟸   XM_040275758
- Peptide Label: isoform X2
- UniProtKB: I3MKI0 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000013172 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000013165.3 UniProtKB/TrEMBL
Gene3D-CATH Glycosyl transferase family 29 UniProtKB/TrEMBL
InterPro Glyco_trans_29 UniProtKB/TrEMBL
  GT29-like_sf UniProtKB/TrEMBL
  Sialyl_trans UniProtKB/TrEMBL
NCBI Gene LOC101961066 ENTREZGENE
PANTHER ALPHA-2,3-SIALYLTRANSFERASE ST3GAL I ISOFORM X1 UniProtKB/TrEMBL
  ST3 BETA-GALACTOSIDE ALPHA-2,3-SIALYLTRANSFERASE 8 UniProtKB/TrEMBL
Pfam Glyco_transf_29 UniProtKB/TrEMBL
PIRSF Sialyl_trans UniProtKB/TrEMBL
UniProt I3MKI0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 LOC101961066  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1  CUNH20orf173  chromosome unknown C20orf173 homolog  Symbol and/or name change 5135510 APPROVED
2017-07-13 CUNH20orf173  chromosome unknown C20orf173 homolog  LOC101961066  chromosome unknown open reading frame, human C20orf173  Symbol and/or name change 5135510 APPROVED