| Gene: LOC102011130 (chromosome unknown open reading frame, human C20orf173) Chinchilla lanigera |
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Analyze |
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| Symbol: |
LOC102011130 |
| Name: |
chromosome unknown open reading frame, human C20orf173 |
| RGD ID: |
8834490 |
| Description: |
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| Type: |
protein-coding
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| RefSeq Status: |
MODEL |
| Previously known as: |
uncharacterized protein C20orf173 homolog |
| RGD Orthologs |
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| Alliance Orthologs |
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| More Info |
more info ...
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| More Info |
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| Latest Assembly: |
ChiLan1.0 - Chinchilla ChiLan1.0 Assembly |
| Position: |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 | NW_004955422 | 25,895,181 - 25,897,125 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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| JBrowse: |
View Region in Genome Browser (JBrowse)
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| Model |
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References
Additional References at PubMed
Genomics
Comparative Map Data
LOC102011130
(Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 | NW_004955422 | 25,895,181 - 25,897,125 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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C20orf173
(Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 20 | 35,520,741 - 35,529,652 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 20 | 35,523,186 - 35,529,652 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 20 | 34,108,569 - 34,117,481 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 20 | 33,578,213 - 33,580,862 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 20 | 33,578,212 - 33,580,862 | NCBI | | | | | Celera | 20 | 30,857,159 - 30,866,071 (-) | NCBI | | Celera | | | Cytogenetic Map | 20 | q11.22 | NCBI | | | | | HuRef | 20 | 30,886,074 - 30,894,985 (-) | NCBI | | HuRef | | | CHM1_1 | 20 | 34,009,933 - 34,018,843 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 20 | 37,241,634 - 37,250,546 (-) | NCBI | | T2T-CHM13v2.0 | | |
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6430550D23Rik
(Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 2 | 155,831,465 - 155,850,315 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 2 | 155,815,199 - 155,849,897 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 2 | 155,989,545 - 156,008,125 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 2 | 155,973,279 - 156,007,977 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 2 | 155,826,179 - 155,833,713 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 2 | 155,741,308 - 155,748,771 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 2 | 161,934,307 - 161,941,841 (-) | NCBI | | Celera | | | Cytogenetic Map | 2 | H1 | NCBI | | | | | cM Map | 2 | 77.26 | NCBI | | | | |
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C3h20orf173
(Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 3 | 164,972,748 - 164,985,195 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 3 | 144,514,060 - 144,524,979 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 3 | 144,519,930 - 144,524,920 (-) | Ensembl | | mRatBN7.2 Ensembl | | | Rnor_6.0 | 3 | 151,546,738 - 151,553,474 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 3 | 151,548,437 - 151,548,995 (-) | NCBI | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 3 | 157,912,018 - 157,918,070 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 3 | 146,411,621 - 146,412,464 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 3 | 143,239,990 - 143,246,726 (-) | NCBI | | Celera | | | Cytogenetic Map | 3 | q42 | NCBI | | | | |
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C21H20orf173
(Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 21 | 41,244,908 - 41,272,468 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 20 | 41,239,807 - 41,265,571 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 20 | 31,854,431 - 31,865,921 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 20 | 32,968,230 - 32,984,196 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 20 | 32,973,857 - 32,976,541 (-) | Ensembl | panpan1.1 | | panPan2 | |
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C24H20orf173
(Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 24 | 24,480,846 - 24,494,388 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 24 | 24,126,074 - 24,139,654 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 24 | 25,173,564 - 25,186,985 (-) | NCBI | | ROS_Cfam_1.0 | | | UMICH_Zoey_3.1 | 24 | 24,459,839 - 24,473,393 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 24 | 24,554,759 - 24,568,347 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 24 | 24,994,371 - 25,007,791 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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LOC101961066
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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C17H20orf173
(Sus scrofa - pig) |
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CUNH20orf173
(Heterocephalus glaber - naked mole-rat) |
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Expression
Sequence
| RefSeq Acc Id: |
XM_005384792 ⟹ XP_005384849 |
| Type: |
CODING |
| Position: |
| Chinchilla Assembly | Chr | Position (strand) | Source |
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ChiLan1.0 | NW_004955422 | 25,895,181 - 25,897,125 (+) | NCBI |
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| Sequence: |
TCTGGTCAGATGTCTTTGAGACATCTACATGGAAGTCCACTTAAAGAAGAAAGACAAAGGAACC
TGTCCCTGTGGATCGCACATTCAGTTTAGGCCATTTGGGCAGGACAGGATGATGACTTTCCAGG
CAGGCTACATGAAGGAGGTCACAATGTGCACTTTATGACGAGCTCTGTAATATATCTGGGATGA
CACTGAGCTTATCCTCCCTCCTGCAGGGGGCATTTGGGACCCAACACATGTTGTCTTTCTGCCG
TGGCATCTTTTTGTTGTTGTTCACTATGAACTTCTTCGTTGATGTAGAAATCGTCTCCCTGGCA
TCTTCCATCTCAGCCCAGCCCACATTCACTTTGGAGGTGGAGAAGCCCGTCAGCTGCCTGCCAC
ATGAGCCATTGCCTGAGCCAGACATGAAGCATTGGTGGAAGATTTTTGTCCTGTTCATCTTTTG
GGTGCCCATCTTGTGGCTGATGGCCCCCTACCTGGATCTGGCCCCTGAATTAGCACTCCAACAA
AAACAGAGGTGGTTGGTCCCATGGCATTACAACCACCCTTGGTTCAGATTTCCTTCTGGAACCT
GCAACTGCTCTTCCTGTCACCACAGAGTTGGAGAATGGAATTGGTTTGGAGCATGCCATGGGGA
GACTGGAGCATACTTCACGGGGACAAAAGTTTCCTGGAGGCTGGGTGGGAACTTAGTAAGTGAG
CTTGGCAGAGTGTGGGAGAAGATGTTGAAAGTGATTCCCAGATCTTTGGTGCACCATTCTGATT
TCTACTGTGTGACTTGTGTGGTGTTGAGGAACTCACAAATCCCACAGGGCTCTGGCCTCAGTGA
CATCGATCAGTACCACATGATCTTCAGGATGAAGCAGGCCTCTGCCCAGGGCTTTGAGACACTT
ACAGGGAACCAAACCACAGGACCCTTCATTTGTCCCAGGAATGCCAGTGACCAAGGCTCCTGGA
CACAGTGGCTGCTTCAGCTTTCTAATCTGGCATGAACTTTGGATGCTGTCCATGATAAAGTGAT
GGAAGAAATGTCCCTAGATGTTCTGTGAGGGACTGAGGAAAGGTCTCTTCAGAAGACAGCAGGT
GCTCCAGGAAGTGTCTGTGGTAGTTTCCTGGAGGCACCCAATGGATTTTTCCAGGCCTCAAGAG
CTTTGTGAAACTTTGCTACCTCTCATTCTTGAATTTTGGAGAATG
hide sequence
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| RefSeq Acc Id: |
XP_005384849 ⟸ XM_005384792 |
| - Sequence: |
MTLSLSSLLQGAFGTQHMLSFCRGIFLLLFTMNFFVDVEIVSLASSISAQPTFTLEVEKPVSCL
PHEPLPEPDMKHWWKIFVLFIFWVPILWLMAPYLDLAPELALQQKQRWLVPWHYNHPWFRFPSG
TCNCSSCHHRVGEWNWFGACHGETGAYFTGTKVSWRLGGNLVSELGRVWEKMLKVIPRSLVHHS
DFYCVTCVVLRNSQIPQGSGLSDIDQYHMIFRMKQASAQGFETLTGNQTTGPFICPRNASDQGS
WTQWLLQLSNLA
hide sequence
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Additional Information
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