Taf1c (TATA-box binding protein associated factor, RNA polymerase I subunit C) - Rat Genome Database

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Gene: Taf1c (TATA-box binding protein associated factor, RNA polymerase I subunit C) Ictidomys tridecemlineatus
Analyze
Symbol: Taf1c
Name: TATA-box binding protein associated factor, RNA polymerase I subunit C
RGD ID: 12517208
Description: ENCODES a protein that exhibits RNA polymerase I core promoter sequence-specific DNA binding (ortholog); RNA polymerase I general transcription initiation factor activity (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; ASSOCIATED WITH autistic disorder (ortholog); developmental and epileptic encephalopathy 11 (ortholog); persistent fetal circulation syndrome (ortholog); FOUND IN fibrillar center (ortholog); nucleolus (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: TATA box-binding protein-associated factor RNA polymerase I subunit C
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934927,895,585 - 27,900,276 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366413,649,177 - 3,653,798 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Taf1c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934927,895,585 - 27,900,276 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366413,649,177 - 3,653,798 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAF1C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381684,177,855 - 84,187,057 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1684,177,847 - 84,187,070 (-)EnsemblGRCh38hg38GRCh38
GRCh371684,211,461 - 84,220,663 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361682,768,962 - 82,778,163 (-)NCBINCBI36Build 36hg18NCBI36
Build 341682,768,962 - 82,778,163NCBI
Celera1668,513,270 - 68,522,472 (-)NCBICelera
Cytogenetic Map16q24.1NCBI
HuRef1669,965,230 - 69,974,453 (-)NCBIHuRef
CHM1_11685,622,840 - 85,632,064 (-)NCBICHM1_1
T2T-CHM13v2.01690,243,928 - 90,253,130 (-)NCBIT2T-CHM13v2.0
Taf1c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398120,324,713 - 120,331,945 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8120,324,610 - 120,331,961 (-)EnsemblGRCm39 Ensembl
GRCm388119,597,974 - 119,605,206 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8119,597,871 - 119,605,222 (-)EnsemblGRCm38mm10GRCm38
MGSCv378122,121,874 - 122,129,140 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368122,483,951 - 122,491,160 (-)NCBIMGSCv36mm8
Celera8123,815,454 - 123,822,720 (-)NCBICelera
Cytogenetic Map8E1NCBI
cM Map868.02NCBI
Taf1c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81964,561,079 - 64,567,599 (-)NCBIGRCr8
mRatBN7.21947,652,451 - 47,658,971 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1947,652,452 - 47,658,971 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1954,446,801 - 54,453,321 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01955,127,419 - 55,133,939 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01957,340,930 - 57,347,450 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01952,246,061 - 52,252,642 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1952,246,068 - 52,252,587 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01962,994,275 - 63,000,801 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41949,842,371 - 49,848,891 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11949,851,555 - 49,853,756 (-)NCBI
Celera1946,911,512 - 46,918,032 (-)NCBICelera
Cytogenetic Map19q12NCBI
Taf1c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495556487,452 - 134,650 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955564121,988 - 132,347 (+)NCBIChiLan1.0ChiLan1.0
TAF1C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21893,925,358 - 93,934,122 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11699,842,523 - 99,851,287 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01664,843,197 - 64,852,408 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11684,184,928 - 84,194,147 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1684,184,928 - 84,194,147 (-)Ensemblpanpan1.1panPan2
TAF1C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1568,175,196 - 68,184,267 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl568,175,014 - 68,184,277 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha568,189,403 - 68,198,337 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0568,413,879 - 68,481,937 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl568,473,001 - 68,481,935 (+)EnsemblROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.0568,257,398 - 68,266,294 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0568,673,069 - 68,682,017 (+)NCBIUU_Cfam_GSD_1.0
TAF1C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl64,448,778 - 4,457,088 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.164,448,672 - 4,457,109 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.265,030,498 - 5,038,769 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TAF1C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1569,587,592 - 69,596,312 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl569,587,769 - 69,593,814 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660476,159,382 - 6,167,713 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Taf1c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247463,406,644 - 3,412,188 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247463,403,122 - 3,412,709 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_005335456   ⟹   XP_005335513
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934927,895,589 - 27,900,276 (+)NCBI
SpeTri2.0NW_0049366413,649,177 - 3,653,798 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040279601   ⟹   XP_040135535
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934927,895,585 - 27,900,276 (+)NCBI
RefSeq Acc Id: XM_040279602   ⟹   XP_040135536
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934927,895,588 - 27,900,276 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005335513 (Get FASTA)   NCBI Sequence Viewer  
  XP_040135535 (Get FASTA)   NCBI Sequence Viewer  
  XP_040135536 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3256761 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005335513   ⟸   XM_005335456
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_040135535   ⟸   XM_040279601
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040135536   ⟸   XM_040279602
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
NCBI Gene Taf1c ENTREZGENE