Advanced Search (OLGA)

Gene: Nfya (nuclear transcription factor Y subunit alpha) Ictidomys tridecemlineatus

Analyze

Symbol:

Nfya

Name:

nuclear transcription factor Y subunit alpha

RGD ID:

12495132

Description:

ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN positive regulation of DNA-templated transcription (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN altered p53 signaling pathway; ASSOCIATED WITH Lung Neoplasms (ortholog); FOUND IN CCAAT-binding factor complex (ortholog); nucleoplasm (ortholog); protein-DNA complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

nuclear transcription factor Y subunit alpha, transcript variant X1; nuclear transcription factor Y subunit alpha, transcript variant X2; nuclear transcription factor Y subunit alpha, transcript variant X3; nuclear transcription factor Y subunit alpha, transcript variant X4; nuclear transcription factor Y subunit alpha, transcript variant X5; nuclear transcription factor Y subunit alpha, transcript variant X6; nuclear transcription factor Y subunit alpha, transcript variant X7; nuclear transcription factor Y subunit alpha, transcript variant X8

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	45,209,288 - 45,233,519 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	18,725,907 - 18,750,864 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936476	18,728,575 - 18,750,917 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Lung Neoplasms (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of DNA-templated transcription (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

regulation of DNA-templated transcription (IEA)

Cellular Component

CCAAT-binding factor complex (IEA,ISO)

nucleoplasm (ISO)

nucleus (IEA)

protein-DNA complex (ISO)

RNA polymerase II transcription regulator complex (ISO)

Molecular Function

DNA binding (IEA)

DNA-binding transcription activator activity, RNA polymerase II-specific (ISO)

DNA-binding transcription factor activity (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (ISO)

sequence-specific DNA binding (ISO)

transcription cis-regulatory region binding (ISO)

transcription coregulator binding (ISO)

transcription factor binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

altered p53 signaling pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Nfya
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	45,209,288 - 45,233,519 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	18,725,907 - 18,750,864 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936476	18,728,575 - 18,750,917 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NFYA
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	41,072,974 - 41,102,403 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	41,072,974 - 41,102,403 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	41,040,713 - 41,070,142 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	41,148,688 - 41,174,713 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	41,148,687 - 41,174,714	NCBI
Celera	6	42,593,388 - 42,622,828 (+)	NCBI		Celera
Cytogenetic Map	6	p21.1	NCBI
HuRef	6	40,758,459 - 40,787,895 (+)	NCBI		HuRef
CHM1_1	6	41,043,210 - 41,072,650 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	40,901,531 - 40,930,960 (+)	NCBI		T2T-CHM13v2.0

Nfya
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	48,693,917 - 48,716,782 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	48,693,913 - 48,716,934 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	48,386,885 - 48,409,820 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	48,386,885 - 48,409,906 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	48,526,210 - 48,549,145 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	47,853,500 - 47,875,288 (-)	NCBI		MGSCv36	mm8
Celera	17	51,818,370 - 51,841,444 (-)	NCBI		Celera
Cytogenetic Map	17	C	NCBI
cM Map	17	23.99	NCBI

Nfya
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	20,085,067 - 20,111,521 (+)	NCBI		GRCr8
mRatBN7.2	9	12,587,437 - 12,613,911 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	12,586,259 - 12,613,898 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	21,100,678 - 21,124,947 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	26,166,902 - 26,191,171 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	24,549,971 - 24,574,266 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	14,551,752 - 14,577,002 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	14,551,758 - 14,576,967 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	13,474,255 - 13,499,504 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	7,970,040 - 7,994,375 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	7,970,039 - 7,994,375 (+)	NCBI
Celera	9	10,361,436 - 10,385,715 (+)	NCBI		Celera
Cytogenetic Map	9	q12	NCBI

Nfya
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	7,744,633 - 7,771,035 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955437	7,745,182 - 7,770,348 (+)	NCBI	ChiLan1.0	ChiLan1.0

NFYA
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	55,569,160 - 55,596,192 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	51,439,113 - 51,466,139 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	40,661,407 - 40,688,440 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	41,969,561 - 41,999,279 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	41,969,561 - 41,996,963 (+)	Ensembl	panpan1.1		panPan2

NFYA
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	9,827,254 - 9,854,693 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	9,835,285 - 9,854,543 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	9,857,490 - 9,886,781 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	10,307,124 - 10,336,396 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	10,308,079 - 10,337,166 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	9,839,014 - 9,868,509 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	9,921,197 - 9,950,466 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	10,015,520 - 10,045,268 (+)	NCBI		UU_Cfam_GSD_1.0

NFYA
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	36,385,873 - 36,409,488 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	36,385,677 - 36,409,495 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	41,682,169 - 41,705,576 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NFYA
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	31,057,059 - 31,084,036 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	31,059,630 - 31,077,926 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	41,073,590 - 41,100,712 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nfya
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	17,656,036 - 17,682,624 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	17,660,134 - 17,682,604 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005318715	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005318716	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005318717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013355775	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013355776	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013355777	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021721925	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021721926	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040282613	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000028281 ⟹ ENSSTOP00000016677

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936476	18,725,907 - 18,749,683 (-)	Ensembl

Ensembl Acc Id:

ENSSTOT00000031086 ⟹ ENSSTOP00000029301

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936476	18,726,090 - 18,750,864 (-)	Ensembl

Ensembl Acc Id:

ENSSTOT00000038000 ⟹ ENSSTOP00000032547

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936476	18,725,907 - 18,749,683 (-)	Ensembl

Ensembl Acc Id:

ENSSTOT00000042254 ⟹ ENSSTOP00000032342

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936476	18,726,090 - 18,750,497 (-)	Ensembl

RefSeq Acc Id:

XM_005318715 ⟹ XP_005318772

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	45,209,288 - 45,233,519 (+)	NCBI
SpeTri2.0	NW_004936476	18,728,575 - 18,750,913 (-)	NCBI

Sequence:

show sequence

TTTGTTCAGGTTCGCCATTTTGCGAGGCAGCGGCAGTGGCGGCGGCAGCGGCGGCTGGAGCCTC
TGATTGGGTTTCGGGGTCCGGTACTGGAGCCAATCAGCGCGGGCAGCGAACCGGGGGAGCGAGG
CACGGAGTGCACCACCTCACAGTCTTCTAGGCTCTCCAAAGTGAAGCTCACTGTGGACAGGATT
CTATCTGGGAGGGGCCATGGAGCAATATACGGCAAATAGCAATAGCTCAACAGAGCAGATTGTT
GTGCAGGCTGGACAGATTCAGCAGCAGCAGCAGGGTGGTGTCACTGCCGTCCAGTTGCAGACTG
AGGCCCAGGTGGCATCTGCCTCAGGCCAGCAGGTCCAGACCCTCCAGGTAGTCCAGGGCCAACC
ATTAATGGTGCAAGTCAGTGGAGGCCAATTAATCACATCAACTGGCCAACCTATTATGGTCCAG
GCTGTCCCCGGGGGACAAGGTCAAACCATCATGCAAGTACCTGTTTCTGGGACACAGGGTTTGC
AACAGATACAACTGGTTCCACCTGGACAGATCCAAATCCAGGGTGGGCAGGCTGTGCAGGTCCA
GGGACAGCAGGGTCAGACCCAGCAGATCATCATTCAGCAGCCTCAGACAGCCGTCACTGCTGGC
CAGACTCAGACTCAGCAGCAAATTGCTGTTCAGGGACAGCAAGTGGCACAGACTGCTGAAGGGC
AAACCATTGTCTACCAGCCAGTTAATGCAGATGGTACTATTCTCCAGCAAGTTACAGTCCCTGT
TTCAGGCATGATCACCATCCCAGCAGCCAGTTTGGCAGGAGCACAGATTGTTCAGACAGGAGCC
AATACCAACACAACCAGCAGTGGTCAAGGGACTGTCACTGTTACATTACCAGTGGCAGGCAATG
TGGTCAATTCAGGAGGAATGGTCATGATGGTGCCTGGAGCTGGCTCTGTGCCTGCTATCCAGAG
AATCCCCCTACCTGGAGCAGAGATGCTTGAAGAAGAGCCCCTCTATGTGAATGCCAAACAGTAC
CACCGTATTCTCAAAAGAAGGCAAGCTCGGGCAAAACTAGAAGCAGAAGGGAAAATTCCAAAGG
AAAGAAGGAAATACCTGCATGAGTCTCGGCACCGTCATGCCATGGCTCGGAAGCGTGGTGAAGG
TGGACGATTTTTTTCTCCCAAAGAAAAGGATAGTCCCCATATGCAGGATCCAAACCAAGCTGAT
GAAGAAGCAATGACACAGATAATTCGAGTTTCCTAACCCTAGGCCATATGATGGAGCTGATCAA
GGTCATATTCCTTGCCGATGTTTTCCACTGTTCCAGGGAATTGATCTACTCTTCCAATGGGACA
TTGACGATCACTTCTGCCCTTTTCTACAGGACAGAAACCACTTAGTTTTTAATAAGTGGCTCAG
TATTATAATTGCAGCAATGTCTGGCAAATTGAAGTTGCAAGCCTTTGTCTCACCCTTTCAGTCA
GGACCTATTTTAGACTGTTGATAACATTTGACATTTCATGGATTAGGATGATACAAGGAGACAC
TTCCCAGCCCAGCAGTATACAAGCACTTATGTTGACTGGTGAAGCCAGCCAGCCATCTCAGCAG
GGAAGAACATCCTTCTCAACCTGAACTGCAATCAGGGAAGCCGCAGCTCATTCCTTCCCATGGA
ATCTAGATAGCATCCATCCCTCTGGTGGGGGAGCTCAGGCTGACCAACTGAATAGACACTTTGT
ATTCAGATGGCCTCTGAGCAAGAAAGTTCCATACTGTGATATGGAAACAATAAATTCTCTGAGA
TACAGCCATCTAATCTGTGGTAATAATAAGAATCTCTGTGGGTTCATATTTTAGGACTTCAGCC
AAGAAAAGTCCAAAAGGATATTTTGGACTCTAGGGATAAAGTGATAAAATTTTGAAGAACCTAA
AA

hide sequence

RefSeq Acc Id:

XM_005318716 ⟹ XP_005318773

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	45,209,288 - 45,233,519 (+)	NCBI
SpeTri2.0	NW_004936476	18,728,575 - 18,750,913 (-)	NCBI

Sequence:

show sequence

TTTGTTCAGGTTCGCCATTTTGCGAGGCAGCGGCAGTGGCGGCGGCAGCGGCGGCTGGAGCCTC
TGATTGGGTTTCGGGGTCCGGTACTGGAGCCAATCAGCGCGGGCAGCGAACCGGGGGAGCGAGG
CACGGAGTGCACCACCTCACAGTCTTCTAGGCTCTCCAAAGTGAAGCTCACTGTGGACAGGATT
CTATCTGGGAGGGGCCATGGAGCAATATACGGCAAATAGCAATAGCTCAACAGAGCAGATTGTT
GTGCAGGCTGGACAGATTCAGCAGCAGCAGGGTGGTGTCACTGCCGTCCAGTTGCAGACTGAGG
CCCAGGTGGCATCTGCCTCAGGCCAGCAGGTCCAGACCCTCCAGGTAGTCCAGGGCCAACCATT
AATGGTGCAAGTCAGTGGAGGCCAATTAATCACATCAACTGGCCAACCTATTATGGTCCAGGCT
GTCCCCGGGGGACAAGGTCAAACCATCATGCAAGTACCTGTTTCTGGGACACAGGGTTTGCAAC
AGATACAACTGGTTCCACCTGGACAGATCCAAATCCAGGGTGGGCAGGCTGTGCAGGTCCAGGG
ACAGCAGGGTCAGACCCAGCAGATCATCATTCAGCAGCCTCAGACAGCCGTCACTGCTGGCCAG
ACTCAGACTCAGCAGCAAATTGCTGTTCAGGGACAGCAAGTGGCACAGACTGCTGAAGGGCAAA
CCATTGTCTACCAGCCAGTTAATGCAGATGGTACTATTCTCCAGCAAGTTACAGTCCCTGTTTC
AGGCATGATCACCATCCCAGCAGCCAGTTTGGCAGGAGCACAGATTGTTCAGACAGGAGCCAAT
ACCAACACAACCAGCAGTGGTCAAGGGACTGTCACTGTTACATTACCAGTGGCAGGCAATGTGG
TCAATTCAGGAGGAATGGTCATGATGGTGCCTGGAGCTGGCTCTGTGCCTGCTATCCAGAGAAT
CCCCCTACCTGGAGCAGAGATGCTTGAAGAAGAGCCCCTCTATGTGAATGCCAAACAGTACCAC
CGTATTCTCAAAAGAAGGCAAGCTCGGGCAAAACTAGAAGCAGAAGGGAAAATTCCAAAGGAAA
GAAGGAAATACCTGCATGAGTCTCGGCACCGTCATGCCATGGCTCGGAAGCGTGGTGAAGGTGG
ACGATTTTTTTCTCCCAAAGAAAAGGATAGTCCCCATATGCAGGATCCAAACCAAGCTGATGAA
GAAGCAATGACACAGATAATTCGAGTTTCCTAACCCTAGGCCATATGATGGAGCTGATCAAGGT
CATATTCCTTGCCGATGTTTTCCACTGTTCCAGGGAATTGATCTACTCTTCCAATGGGACATTG
ACGATCACTTCTGCCCTTTTCTACAGGACAGAAACCACTTAGTTTTTAATAAGTGGCTCAGTAT
TATAATTGCAGCAATGTCTGGCAAATTGAAGTTGCAAGCCTTTGTCTCACCCTTTCAGTCAGGA
CCTATTTTAGACTGTTGATAACATTTGACATTTCATGGATTAGGATGATACAAGGAGACACTTC
CCAGCCCAGCAGTATACAAGCACTTATGTTGACTGGTGAAGCCAGCCAGCCATCTCAGCAGGGA
AGAACATCCTTCTCAACCTGAACTGCAATCAGGGAAGCCGCAGCTCATTCCTTCCCATGGAATC
TAGATAGCATCCATCCCTCTGGTGGGGGAGCTCAGGCTGACCAACTGAATAGACACTTTGTATT
CAGATGGCCTCTGAGCAAGAAAGTTCCATACTGTGATATGGAAACAATAAATTCTCTGAGATAC
AGCCATCTAATCTGTGGTAATAATAAGAATCTCTGTGGGTTCATATTTTAGGACTTCAGCCAAG
AAAAGTCCAAAAGGATATTTTGGACTCTAGGGATAAAGTGATAAAATTTTGAAGAACCTAAAA

hide sequence

RefSeq Acc Id:

XM_005318717 ⟹ XP_005318774

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	45,209,288 - 45,233,519 (+)	NCBI
SpeTri2.0	NW_004936476	18,728,575 - 18,750,917 (-)	NCBI

Sequence:

show sequence

CCCCTTTGTTCAGGTTCGCCATTTTGCGAGGCAGCGGCAGTGGCGGCGGCAGCGGCGGCTGGAG
CCTCTGATTGGGTTTCGGGGTCCGGTACTGGAGCCAATCAGCGCGGGCAGCGAACCGGGGGAGC
GAGGCACGGAGTGCACCACCTCACAGTCTTCTAGGCTCTCCAAAGTGAAGCTCACTGTGGACAG
GATTCTATCTGGGAGGGGCCATGGAGCAATATACGGCAAATAGCAATAGCTCAACAGAGCAGAT
TGTTGTGCAGGCTGGACAGATTCAGCAGCAGCAGCAGGGTGGTGTCACTGCCGTCCAGTTGCAG
ACTGAGGCCCAGGTGGCATCTGCCTCAGGCCAGCAGGTCCAGACCCTCCAGGTAGTCCAGGGCC
AACCATTAATGGTGCAAGTCAGTGGAGGCCAATTAATCACATCAACTGGCCAACCTATTATGGT
CCAGGCTGTCCCCGGGGGACAAGGTCAAACCATCATGCAAGTACCTGTTTCTGGGACACAGGGT
TTGCAACAGATACAACTGGTTCCACCTGGACAGATCCAAATCCAGGGTGGGCAGGCTGTGCAGG
TCCAGGGACAGCAGGGTCAGACCCAGCAGATCATCATTCAGCAGCCTCAGACAGCCGTCACTGC
TGGCCAGACTCAGACTCAGCAGCAAATTGCTGTTCAGGGACAGCAAGTGGCACAGACTGCTGAA
GGGCAAACCATTGTCTACCAGCCAGTTAATGCAGATGGTACTATTCTCCAGCAAGGCATGATCA
CCATCCCAGCAGCCAGTTTGGCAGGAGCACAGATTGTTCAGACAGGAGCCAATACCAACACAAC
CAGCAGTGGTCAAGGGACTGTCACTGTTACATTACCAGTGGCAGGCAATGTGGTCAATTCAGGA
GGAATGGTCATGATGGTGCCTGGAGCTGGCTCTGTGCCTGCTATCCAGAGAATCCCCCTACCTG
GAGCAGAGATGCTTGAAGAAGAGCCCCTCTATGTGAATGCCAAACAGTACCACCGTATTCTCAA
AAGAAGGCAAGCTCGGGCAAAACTAGAAGCAGAAGGGAAAATTCCAAAGGAAAGAAGGAAATAC
CTGCATGAGTCTCGGCACCGTCATGCCATGGCTCGGAAGCGTGGTGAAGGTGGACGATTTTTTT
CTCCCAAAGAAAAGGATAGTCCCCATATGCAGGATCCAAACCAAGCTGATGAAGAAGCAATGAC
ACAGATAATTCGAGTTTCCTAACCCTAGGCCATATGATGGAGCTGATCAAGGTCATATTCCTTG
CCGATGTTTTCCACTGTTCCAGGGAATTGATCTACTCTTCCAATGGGACATTGACGATCACTTC
TGCCCTTTTCTACAGGACAGAAACCACTTAGTTTTTAATAAGTGGCTCAGTATTATAATTGCAG
CAATGTCTGGCAAATTGAAGTTGCAAGCCTTTGTCTCACCCTTTCAGTCAGGACCTATTTTAGA
CTGTTGATAACATTTGACATTTCATGGATTAGGATGATACAAGGAGACACTTCCCAGCCCAGCA
GTATACAAGCACTTATGTTGACTGGTGAAGCCAGCCAGCCATCTCAGCAGGGAAGAACATCCTT
CTCAACCTGAACTGCAATCAGGGAAGCCGCAGCTCATTCCTTCCCATGGAATCTAGATAGCATC
CATCCCTCTGGTGGGGGAGCTCAGGCTGACCAACTGAATAGACACTTTGTATTCAGATGGCCTC
TGAGCAAGAAAGTTCCATACTGTGATATGGAAACAATAAATTCTCTGAGATACAGCCATCTAAT
CTGTGGTAATAATAAGAATCTCTGTGGGTTCATATTTTAGGACTTCAGCCAAGAAAAGTCCAAA
AGGATATTTTGGACTCTAGGGATAAAGTGATAAAATTTTGAAGAACCTAAAA

hide sequence

RefSeq Acc Id:

XM_013355775 ⟹ XP_013211229

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	45,209,791 - 45,233,519 (+)	NCBI
SpeTri2.0	NW_004936476	18,728,575 - 18,750,664 (-)	NCBI

Sequence:

show sequence

GAGCCTAGCCGAGCAGGGCGGCCGGAGGCCCCGGCCCGGAGCCTGCTGGCGACTCGGGGCACTC
CCGGCCGGGGCCTGCAGGGGCCGCCCAGTGTGGGGATGGCGCCCCCGGGGGAAGGCTCTTTGGG
TTCTTGTCCCTTGCGGGGTGCCAGTGCCAGTTGGGGATGCAACCTCTTTCCTCCGACCCTTAGG
CCCGGGTTCTCGGGCCCCGGGAATGCGGGTGGTGGCCTTGACTGCCACAAGTGCCCCTACACTC
AACAACACAAGCGCGCCCTGGGCCCCGGCGGTTTTCCCCGTCCTTCCAGCCTCATCCTTAAATC
CGCCCTTGTACTCTCCACGCCCCGACTCTCGGGACGAAAGGACCTCCCGCGAGCACGTGTCCCC
GGCCCTGAGAGTGCACCACCTCACAGTCTTCTAGGCTCTCCAAAGTGAAGCTCACTGTGGACAG
GATTCTATCTGGGAGGGGCCATGGAGCAATATACGGCAAATAGCAATAGCTCAACAGAGCAGAT
TGTTGTGCAGGCTGGACAGATTCAGCAGCAGCAGCAGGGTGGTGTCACTGCCGTCCAGTTGCAG
ACTGAGGCCCAGGTGGCATCTGCCTCAGGCCAGCAGGTCCAGACCCTCCAGGTAGTCCAGGGCC
AACCATTAATGGTGCAAGTCAGTGGAGGCCAATTAATCACATCAACTGGCCAACCTATTATGGT
CCAGGCTGTCCCCGGGGGACAAGGTCAAACCATCATGCAAGTACCTGTTTCTGGGACACAGGGT
TTGCAACAGATACAACTGGTTCCACCTGGACAGATCCAAATCCAGGGTGGGCAGGCTGTGCAGG
TCCAGGGACAGCAGGGTCAGACCCAGCAGATCATCATTCAGCAGCCTCAGACAGCCGTCACTGC
TGGCCAGACTCAGACTCAGCAGCAAATTGCTGTTCAGGGACAGCAAGTGGCACAGACTGCTGAA
GGGCAAACCATTGTCTACCAGCCAGTTAATGCAGATGGTACTATTCTCCAGCAAGTTACAGTCC
CTGTTTCAGGCATGATCACCATCCCAGCAGCCAGTTTGGCAGGAGCACAGATTGTTCAGACAGG
AGCCAATACCAACACAACCAGCAGTGGTCAAGGGACTGTCACTGTTACATTACCAGTGGCAGGC
AATGTGGTCAATTCAGGAGGAATGGTCATGATGGTGCCTGGAGCTGGCTCTGTGCCTGCTATCC
AGAGAATCCCCCTACCTGGAGCAGAGATGCTTGAAGAAGAGCCCCTCTATGTGAATGCCAAACA
GTACCACCGTATTCTCAAAAGAAGGCAAGCTCGGGCAAAACTAGAAGCAGAAGGGAAAATTCCA
AAGGAAAGAAGGAAATACCTGCATGAGTCTCGGCACCGTCATGCCATGGCTCGGAAGCGTGGTG
AAGGTGGACGATTTTTTTCTCCCAAAGAAAAGGATAGTCCCCATATGCAGGATCCAAACCAAGC
TGATGAAGAAGCAATGACACAGATAATTCGAGTTTCCTAACCCTAGGCCATATGATGGAGCTGA
TCAAGGTCATATTCCTTGCCGATGTTTTCCACTGTTCCAGGGAATTGATCTACTCTTCCAATGG
GACATTGACGATCACTTCTGCCCTTTTCTACAGGACAGAAACCACTTAGTTTTTAATAAGTGGC
TCAGTATTATAATTGCAGCAATGTCTGGCAAATTGAAGTTGCAAGCCTTTGTCTCACCCTTTCA
GTCAGGACCTATTTTAGACTGTTGATAACATTTGACATTTCATGGATTAGGATGATACAAGGAG
ACACTTCCCAGCCCAGCAGTATACAAGCACTTATGTTGACTGGTGAAGCCAGCCAGCCATCTCA
GCAGGGAAGAACATCCTTCTCAACCTGAACTGCAATCAGGGAAGCCGCAGCTCATTCCTTCCCA
TGGAATCTAGATAGCATCCATCCCTCTGGTGGGGGAGCTCAGGCTGACCAACTGAATAGACACT
TTGTATTCAGATGGCCTCTGAGCAAGAAAGTTCCATACTGTGATATGGAAACAATAAATTCTCT
GAGATACAGCCATCTAATCTGTGGTAATAATAAGAATCTCTGTGGGTTCATATTTTAGGACTTC
AGCCAAGAAAAGTCCAAAAGGATATTTTGGACTCTAGGGATAAAGTGATAAAATTTTGAAGAAC
CTAAAA

hide sequence

RefSeq Acc Id:

XM_013355776 ⟹ XP_013211230

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	45,209,288 - 45,233,519 (+)	NCBI
SpeTri2.0	NW_004936476	18,728,575 - 18,750,914 (-)	NCBI

Sequence:

show sequence

CTTTGTTCAGGTTCGCCATTTTGCGAGGCAGCGGCAGTGGCGGCGGCAGCGGCGGCTGGAGCCT
CTGATTGGGTTTCGGGGTCCGGTACTGGAGCCAATCAGCGCGGGCAGCGAACCGGGGGAGCGAG
GCACGGAGTGCACCACCTCACAGTCTTCTAGGCTCTCCAAAGTGAAGCTCACTGTGGACAGGAT
TCTATCTGGGAGGGGCCATGGAGCAATATACGGCAAATAGCAATAGCTCAACAGAGCAGATTGT
TGTGCAGGCTGGACAGATTCAGCAGCAGCAGCAGGGTGGTGTCACTGCCGTCCAGTTGCAGACT
GAGGCCCAGGTGGCATCTGCCTCAGGCCAGCAGGTCCAGACCCTCCAGGTCCAGGGCCAACCAT
TAATGGTGCAAGTCAGTGGAGGCCAATTAATCACATCAACTGGCCAACCTATTATGGTCCAGGC
TGTCCCCGGGGGACAAGGTCAAACCATCATGCAAGTACCTGTTTCTGGGACACAGGGTTTGCAA
CAGATACAACTGGTTCCACCTGGACAGATCCAAATCCAGGGTGGGCAGGCTGTGCAGGTCCAGG
GACAGCAGGGTCAGACCCAGCAGATCATCATTCAGCAGCCTCAGACAGCCGTCACTGCTGGCCA
GACTCAGACTCAGCAGCAAATTGCTGTTCAGGGACAGCAAGTGGCACAGACTGCTGAAGGGCAA
ACCATTGTCTACCAGCCAGTTAATGCAGATGGTACTATTCTCCAGCAAGTTACAGTCCCTGTTT
CAGGCATGATCACCATCCCAGCAGCCAGTTTGGCAGGAGCACAGATTGTTCAGACAGGAGCCAA
TACCAACACAACCAGCAGTGGTCAAGGGACTGTCACTGTTACATTACCAGTGGCAGGCAATGTG
GTCAATTCAGGAGGAATGGTCATGATGGTGCCTGGAGCTGGCTCTGTGCCTGCTATCCAGAGAA
TCCCCCTACCTGGAGCAGAGATGCTTGAAGAAGAGCCCCTCTATGTGAATGCCAAACAGTACCA
CCGTATTCTCAAAAGAAGGCAAGCTCGGGCAAAACTAGAAGCAGAAGGGAAAATTCCAAAGGAA
AGAAGGAAATACCTGCATGAGTCTCGGCACCGTCATGCCATGGCTCGGAAGCGTGGTGAAGGTG
GACGATTTTTTTCTCCCAAAGAAAAGGATAGTCCCCATATGCAGGATCCAAACCAAGCTGATGA
AGAAGCAATGACACAGATAATTCGAGTTTCCTAACCCTAGGCCATATGATGGAGCTGATCAAGG
TCATATTCCTTGCCGATGTTTTCCACTGTTCCAGGGAATTGATCTACTCTTCCAATGGGACATT
GACGATCACTTCTGCCCTTTTCTACAGGACAGAAACCACTTAGTTTTTAATAAGTGGCTCAGTA
TTATAATTGCAGCAATGTCTGGCAAATTGAAGTTGCAAGCCTTTGTCTCACCCTTTCAGTCAGG
ACCTATTTTAGACTGTTGATAACATTTGACATTTCATGGATTAGGATGATACAAGGAGACACTT
CCCAGCCCAGCAGTATACAAGCACTTATGTTGACTGGTGAAGCCAGCCAGCCATCTCAGCAGGG
AAGAACATCCTTCTCAACCTGAACTGCAATCAGGGAAGCCGCAGCTCATTCCTTCCCATGGAAT
CTAGATAGCATCCATCCCTCTGGTGGGGGAGCTCAGGCTGACCAACTGAATAGACACTTTGTAT
TCAGATGGCCTCTGAGCAAGAAAGTTCCATACTGTGATATGGAAACAATAAATTCTCTGAGATA
CAGCCATCTAATCTGTGGTAATAATAAGAATCTCTGTGGGTTCATATTTTAGGACTTCAGCCAA
GAAAAGTCCAAAAGGATATTTTGGACTCTAGGGATAAAGTGATAAAATTTTGAAGAACCTAAAA

hide sequence

RefSeq Acc Id:

XM_013355777 ⟹ XP_013211231

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	45,209,288 - 45,233,519 (+)	NCBI
SpeTri2.0	NW_004936476	18,728,575 - 18,750,908 (-)	NCBI

Sequence:

show sequence

TCAGGTTCGCCATTTTGCGAGGCAGCGGCAGTGGCGGCGGCAGCGGCGGCTGGAGCCTCTGATT
GGGTTTCGGGGTCCGGTACTGGAGCCAATCAGCGCGGGCAGCGAACCGGGGGAGCGAGGCACGG
AGTGCACCACCTCACAGTCTTCTAGGCTCTCCAAAGTGAAGCTCACTGTGGACAGGATTCTATC
TGGGAGGGGCCATGGAGCAATATACGGCAAATAGCAATAGCTCAACAGAGCAGATTGTTGTGCA
GGCTGGACAGATTCAGCAGCAGGTCCAGGGCCAACCATTAATGGTGCAAGTCAGTGGAGGCCAA
TTAATCACATCAACTGGCCAACCTATTATGGTCCAGGCTGTCCCCGGGGGACAAGGTCAAACCA
TCATGCAAGTACCTGTTTCTGGGACACAGGGTTTGCAACAGATACAACTGGTTCCACCTGGACA
GATCCAAATCCAGGGTGGGCAGGCTGTGCAGGTCCAGGGACAGCAGGGTCAGACCCAGCAGATC
ATCATTCAGCAGCCTCAGACAGCCGTCACTGCTGGCCAGACTCAGACTCAGCAGCAAATTGCTG
TTCAGGGACAGCAAGTGGCACAGACTGCTGAAGGGCAAACCATTGTCTACCAGCCAGTTAATGC
AGATGGTACTATTCTCCAGCAAGTTACAGTCCCTGTTTCAGGCATGATCACCATCCCAGCAGCC
AGTTTGGCAGGAGCACAGATTGTTCAGACAGGAGCCAATACCAACACAACCAGCAGTGGTCAAG
GGACTGTCACTGTTACATTACCAGTGGCAGGCAATGTGGTCAATTCAGGAGGAATGGTCATGAT
GGTGCCTGGAGCTGGCTCTGTGCCTGCTATCCAGAGAATCCCCCTACCTGGAGCAGAGATGCTT
GAAGAAGAGCCCCTCTATGTGAATGCCAAACAGTACCACCGTATTCTCAAAAGAAGGCAAGCTC
GGGCAAAACTAGAAGCAGAAGGGAAAATTCCAAAGGAAAGAAGGAAATACCTGCATGAGTCTCG
GCACCGTCATGCCATGGCTCGGAAGCGTGGTGAAGGTGGACGATTTTTTTCTCCCAAAGAAAAG
GATAGTCCCCATATGCAGGATCCAAACCAAGCTGATGAAGAAGCAATGACACAGATAATTCGAG
TTTCCTAACCCTAGGCCATATGATGGAGCTGATCAAGGTCATATTCCTTGCCGATGTTTTCCAC
TGTTCCAGGGAATTGATCTACTCTTCCAATGGGACATTGACGATCACTTCTGCCCTTTTCTACA
GGACAGAAACCACTTAGTTTTTAATAAGTGGCTCAGTATTATAATTGCAGCAATGTCTGGCAAA
TTGAAGTTGCAAGCCTTTGTCTCACCCTTTCAGTCAGGACCTATTTTAGACTGTTGATAACATT
TGACATTTCATGGATTAGGATGATACAAGGAGACACTTCCCAGCCCAGCAGTATACAAGCACTT
ATGTTGACTGGTGAAGCCAGCCAGCCATCTCAGCAGGGAAGAACATCCTTCTCAACCTGAACTG
CAATCAGGGAAGCCGCAGCTCATTCCTTCCCATGGAATCTAGATAGCATCCATCCCTCTGGTGG
GGGAGCTCAGGCTGACCAACTGAATAGACACTTTGTATTCAGATGGCCTCTGAGCAAGAAAGTT
CCATACTGTGATATGGAAACAATAAATTCTCTGAGATACAGCCATCTAATCTGTGGTAATAATA
AGAATCTCTGTGGGTTCATATTTTAGGACTTCAGCCAAGAAAAGTCCAAAAGGATATTTTGGAC
TCTAGGGATAAAGTGATAAAATTTTGAAGAACCTAAAA

hide sequence

RefSeq Acc Id:

XM_021721925 ⟹ XP_021577600

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	45,210,193 - 45,233,519 (+)	NCBI
SpeTri2.0	NW_004936476	18,728,575 - 18,750,015 (-)	NCBI

Sequence:

show sequence

CTCCTCCCCGCCTCGCTTGTCCGGGCAGGACCGCACACCTCTGTGCTGGAGTCCAACCAAGCGG
TCCGTCTGCCAGGCCCGGCCATTCGGTGCTTGGAACCTCACTCTTAGAAGATTGATAGCCCTGC
GCATTCTTTCCCGGAGGCTGCACAACTACTGTTTATATTATTTGTCTTCTCCGTTGCTCATTCT
GTGAACTCTTCCTCCCTTGGAAATGAGTGCACCACCTCACAGTCTTCTAGGCTCTCCAAAGTGA
AGCTCACTGTGGACAGGATTCTATCTGGGAGGGGCCATGGAGCAATATACGGCAAATAGCAATA
GCTCAACAGAGCAGATTGTTGTGCAGGCTGGACAGATTCAGCAGCAGCAGCAGGGTGGTGTCAC
TGCCGTCCAGTTGCAGACTGAGGCCCAGGTGGCATCTGCCTCAGGCCAGCAGGTCCAGACCCTC
CAGGTAGTCCAGGGCCAACCATTAATGGTGCAAGTCAGTGGAGGCCAATTAATCACATCAACTG
GCCAACCTATTATGGTCCAGGCTGTCCCCGGGGGACAAGGTCAAACCATCATGCAAGTACCTGT
TTCTGGGACACAGGGTTTGCAACAGATACAACTGGTTCCACCTGGACAGATCCAAATCCAGGGT
GGGCAGGCTGTGCAGGTCCAGGGACAGCAGGGTCAGACCCAGCAGATCATCATTCAGCAGCCTC
AGACAGCCGTCACTGCTGGCCAGACTCAGACTCAGCAGCAAATTGCTGTTCAGGGACAGCAAGT
GGCACAGACTGCTGAAGGGCAAACCATTGTCTACCAGCCAGTTAATGCAGATGGTACTATTCTC
CAGCAAGTTACAGTCCCTGTTTCAGGCATGATCACCATCCCAGCAGCCAGTTTGGCAGGAGCAC
AGATTGTTCAGACAGGAGCCAATACCAACACAACCAGCAGTGGTCAAGGGACTGTCACTGTTAC
ATTACCAGTGGCAGGCAATGTGGTCAATTCAGGAGGAATGGTCATGATGGTGCCTGGAGCTGGC
TCTGTGCCTGCTATCCAGAGAATCCCCCTACCTGGAGCAGAGATGCTTGAAGAAGAGCCCCTCT
ATGTGAATGCCAAACAGTACCACCGTATTCTCAAAAGAAGGCAAGCTCGGGCAAAACTAGAAGC
AGAAGGGAAAATTCCAAAGGAAAGAAGGAAATACCTGCATGAGTCTCGGCACCGTCATGCCATG
GCTCGGAAGCGTGGTGAAGGTGGACGATTTTTTTCTCCCAAAGAAAAGGATAGTCCCCATATGC
AGGATCCAAACCAAGCTGATGAAGAAGCAATGACACAGATAATTCGAGTTTCCTAACCCTAGGC
CATATGATGGAGCTGATCAAGGTCATATTCCTTGCCGATGTTTTCCACTGTTCCAGGGAATTGA
TCTACTCTTCCAATGGGACATTGACGATCACTTCTGCCCTTTTCTACAGGACAGAAACCACTTA
GTTTTTAATAAGTGGCTCAGTATTATAATTGCAGCAATGTCTGGCAAATTGAAGTTGCAAGCCT
TTGTCTCACCCTTTCAGTCAGGACCTATTTTAGACTGTTGATAACATTTGACATTTCATGGATT
AGGATGATACAAGGAGACACTTCCCAGCCCAGCAGTATACAAGCACTTATGTTGACTGGTGAAG
CCAGCCAGCCATCTCAGCAGGGAAGAACATCCTTCTCAACCTGAACTGCAATCAGGGAAGCCGC
AGCTCATTCCTTCCCATGGAATCTAGATAGCATCCATCCCTCTGGTGGGGGAGCTCAGGCTGAC
CAACTGAATAGACACTTTGTATTCAGATGGCCTCTGAGCAAGAAAGTTCCATACTGTGATATGG
AAACAATAAATTCTCTGAGATACAGCCATCTAATCTGTGGTAATAATAAGAATCTCTGTGGGTT
CATATTTTAGGACTTCAGCCAAGAAAAGTCCAAAAGGATATTTTGGACTCTAGGGATAAAGTGA
TAAAATTTTGAAGAACCTAAAA

hide sequence

RefSeq Acc Id:

XM_021721926 ⟹ XP_021577601

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	45,209,288 - 45,233,519 (+)	NCBI
SpeTri2.0	NW_004936476	18,728,575 - 18,750,913 (-)	NCBI

Sequence:

show sequence

TTTGTTCAGGTTCGCCATTTTGCGAGGCAGCGGCAGTGGCGGCGGCAGCGGCGGCTGGAGCCTC
TGATTGGGTTTCGGGGTCCGGTACTGGAGCCAATCAGCGCGGGCAGCGAACCGGGGGAGCGAGG
CACGGAGTGCACCACCTCACAGTCTTCTAGGCTCTCCAAAGTGAAGCTCACTGTGGACAGGATT
CTATCTGGGAGGGGCCATGGAGCAATATACGGCAAATAGCAATAGCTCAACAGAGCAGATTGTT
GTGCAGGCTGGACAGATTCAGCAGCAGGTCCAGGGCCAACCATTAATGGTGCAAGTCAGTGGAG
GCCAATTAATCACATCAACTGGCCAACCTATTATGGTCCAGGCTGTCCCCGGGGGACAAGGTCA
AACCATCATGCAAGTACCTGTTTCTGGGACACAGGGTTTGCAACAGATACAACTGGTTCCACCT
GGACAGATCCAAATCCAGGGTGGGCAGGCTGTGCAGGTCCAGGGACAGCAGGGTCAGACCCAGC
AGATCATCATTCAGCAGCCTCAGACAGCCGTCACTGCTGGCCAGACTCAGACTCAGCAGCAAAT
TGCTGTTCAGGGACAGCAAGTGGCACAGACTGCTGAAGGGCAAACCATTGTCTACCAGCCAGTT
AATGCAGATGGTACTATTCTCCAGCAAGGCATGATCACCATCCCAGCAGCCAGTTTGGCAGGAG
CACAGATTGTTCAGACAGGAGCCAATACCAACACAACCAGCAGTGGTCAAGGGACTGTCACTGT
TACATTACCAGTGGCAGGCAATGTGGTCAATTCAGGAGGAATGGTCATGATGGTGCCTGGAGCT
GGCTCTGTGCCTGCTATCCAGAGAATCCCCCTACCTGGAGCAGAGATGCTTGAAGAAGAGCCCC
TCTATGTGAATGCCAAACAGTACCACCGTATTCTCAAAAGAAGGCAAGCTCGGGCAAAACTAGA
AGCAGAAGGGAAAATTCCAAAGGAAAGAAGGAAATACCTGCATGAGTCTCGGCACCGTCATGCC
ATGGCTCGGAAGCGTGGTGAAGGTGGACGATTTTTTTCTCCCAAAGAAAAGGATAGTCCCCATA
TGCAGGATCCAAACCAAGCTGATGAAGAAGCAATGACACAGATAATTCGAGTTTCCTAACCCTA
GGCCATATGATGGAGCTGATCAAGGTCATATTCCTTGCCGATGTTTTCCACTGTTCCAGGGAAT
TGATCTACTCTTCCAATGGGACATTGACGATCACTTCTGCCCTTTTCTACAGGACAGAAACCAC
TTAGTTTTTAATAAGTGGCTCAGTATTATAATTGCAGCAATGTCTGGCAAATTGAAGTTGCAAG
CCTTTGTCTCACCCTTTCAGTCAGGACCTATTTTAGACTGTTGATAACATTTGACATTTCATGG
ATTAGGATGATACAAGGAGACACTTCCCAGCCCAGCAGTATACAAGCACTTATGTTGACTGGTG
AAGCCAGCCAGCCATCTCAGCAGGGAAGAACATCCTTCTCAACCTGAACTGCAATCAGGGAAGC
CGCAGCTCATTCCTTCCCATGGAATCTAGATAGCATCCATCCCTCTGGTGGGGGAGCTCAGGCT
GACCAACTGAATAGACACTTTGTATTCAGATGGCCTCTGAGCAAGAAAGTTCCATACTGTGATA
TGGAAACAATAAATTCTCTGAGATACAGCCATCTAATCTGTGGTAATAATAAGAATCTCTGTGG
GTTCATATTTTAGGACTTCAGCCAAGAAAAGTCCAAAAGGATATTTTGGACTCTAGGGATAAAG
TGATAAAATTTTGAAGAACCTAAAA

hide sequence

RefSeq Acc Id:

XM_040282613 ⟹ XP_040138547

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	45,209,288 - 45,233,519 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005318772	(Get FASTA)	NCBI Sequence Viewer
	XP_005318773	(Get FASTA)	NCBI Sequence Viewer
	XP_005318774	(Get FASTA)	NCBI Sequence Viewer
	XP_013211229	(Get FASTA)	NCBI Sequence Viewer
	XP_013211230	(Get FASTA)	NCBI Sequence Viewer
	XP_013211231	(Get FASTA)	NCBI Sequence Viewer
	XP_021577600	(Get FASTA)	NCBI Sequence Viewer
	XP_021577601	(Get FASTA)	NCBI Sequence Viewer
	XP_040138547	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000016677.2
	ENSSTOP00000029301.1
	ENSSTOP00000032342.1
	ENSSTOP00000032547.1
GenBank Protein	KAG3289409	(Get FASTA)	NCBI Sequence Viewer
	KAG3289410	(Get FASTA)	NCBI Sequence Viewer
	KAG3289411	(Get FASTA)	NCBI Sequence Viewer
	KAG3289412	(Get FASTA)	NCBI Sequence Viewer
	KAG3289413	(Get FASTA)	NCBI Sequence Viewer
	KAG3289414	(Get FASTA)	NCBI Sequence Viewer
	KAG3289415	(Get FASTA)	NCBI Sequence Viewer
	KAG3289416	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005318772 ⟸ XM_005318715
- Peptide Label:	isoform X1
- UniProtKB:	A0A287DFQ5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEQYTANSNSSTEQIVVQAGQIQQQQQGGVTAVQLQTEAQVASASGQQVQTLQVVQGQPLMVQV SGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQ TQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTILQQVTVPVSGMIT IPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMMVPGAGSVPAIQRIPLPG AEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFS PKEKDSPHMQDPNQADEEAMTQIIRVS hide sequence

RefSeq Acc Id:	XP_013211231 ⟸ XM_013355777
- Peptide Label:	isoform X6
- UniProtKB:	A0A287DGA6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEQYTANSNSSTEQIVVQAGQIQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQV PVSGTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQ QVAQTAEGQTIVYQPVNADGTILQQVTVPVSGMITIPAASLAGAQIVQTGANTNTTSSGQGTVT VTLPVAGNVVNSGGMVMMVPGAGSVPAIQRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKL EAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKEKDSPHMQDPNQADEEAMTQIIRVS hide sequence

RefSeq Acc Id:	XP_005318773 ⟸ XM_005318716
- Peptide Label:	isoform X2
- UniProtKB:	I3MX32 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEQYTANSNSSTEQIVVQAGQIQQQQGGVTAVQLQTEAQVASASGQQVQTLQVVQGQPLMVQVS GGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQT QQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTILQQVTVPVSGMITI PAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMMVPGAGSVPAIQRIPLPGA EMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSP KEKDSPHMQDPNQADEEAMTQIIRVS hide sequence

RefSeq Acc Id:

XP_013211230 ⟸ XM_013355776

- Peptide Label:

isoform X3

- Sequence:

show sequence

MEQYTANSNSSTEQIVVQAGQIQQQQQGGVTAVQLQTEAQVASASGQQVQTLQVQGQPLMVQVS
GGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQT
QQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTILQQVTVPVSGMITI
PAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMMVPGAGSVPAIQRIPLPGA
EMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSP
KEKDSPHMQDPNQADEEAMTQIIRVS

hide sequence

RefSeq Acc Id:	XP_005318774 ⟸ XM_005318717
- Peptide Label:	isoform X5
- UniProtKB:	A0A287D712 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEQYTANSNSSTEQIVVQAGQIQQQQQGGVTAVQLQTEAQVASASGQQVQTLQVVQGQPLMVQV SGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQ TQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTILQQGMITIPAASL AGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMMVPGAGSVPAIQRIPLPGAEMLEE EPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKEKDS PHMQDPNQADEEAMTQIIRVS hide sequence

RefSeq Acc Id:	XP_013211229 ⟸ XM_013355775
- Peptide Label:	isoform X1
- UniProtKB:	A0A287DFQ5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEQYTANSNSSTEQIVVQAGQIQQQQQGGVTAVQLQTEAQVASASGQQVQTLQVVQGQPLMVQV SGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQ TQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTILQQVTVPVSGMIT IPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMMVPGAGSVPAIQRIPLPG AEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFS PKEKDSPHMQDPNQADEEAMTQIIRVS hide sequence

RefSeq Acc Id:

XP_021577601 ⟸ XM_021721926

- Peptide Label:

isoform X7

- Sequence:

show sequence

MEQYTANSNSSTEQIVVQAGQIQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQV
PVSGTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQ
QVAQTAEGQTIVYQPVNADGTILQQGMITIPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVA
GNVVNSGGMVMMVPGAGSVPAIQRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKI
PKERRKYLHESRHRHAMARKRGEGGRFFSPKEKDSPHMQDPNQADEEAMTQIIRVS

hide sequence

RefSeq Acc Id:	XP_021577600 ⟸ XM_021721925
- Peptide Label:	isoform X1
- UniProtKB:	A0A287DFQ5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEQYTANSNSSTEQIVVQAGQIQQQQQGGVTAVQLQTEAQVASASGQQVQTLQVVQGQPLMVQV SGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQGLQQIQLVPPGQIQIQGGQAVQVQGQQGQ TQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIVYQPVNADGTILQQVTVPVSGMIT IPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMMVPGAGSVPAIQRIPLPG AEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFS PKEKDSPHMQDPNQADEEAMTQIIRVS hide sequence

RefSeq Acc Id:	XP_040138547 ⟸ XM_040282613
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSSTOP00000032547 ⟸ ENSSTOT00000038000

Ensembl Acc Id:

ENSSTOP00000016677 ⟸ ENSSTOT00000028281

Ensembl Acc Id:

ENSSTOP00000029301 ⟸ ENSSTOT00000031086

Ensembl Acc Id:

ENSSTOP00000032342 ⟸ ENSSTOT00000042254

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000023405	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000028281.2	UniProtKB/TrEMBL
	ENSSTOT00000031086.1	UniProtKB/TrEMBL
	ENSSTOT00000038000.1	UniProtKB/TrEMBL
	ENSSTOT00000042254.1	UniProtKB/TrEMBL
Gene3D-CATH	6.10.250.2430	UniProtKB/TrEMBL
InterPro	CCAAT-binding_factor_CS	UniProtKB/TrEMBL
	NFYA	UniProtKB/TrEMBL
NCBI Gene	Nfya	ENTREZGENE
PANTHER	PTHR12632	UniProtKB/TrEMBL
Pfam	CBFB_NFYA	UniProtKB/TrEMBL
PRINTS	CCAATSUBUNTB	UniProtKB/TrEMBL
PROSITE	NFYA_HAP2_1	UniProtKB/TrEMBL
	NFYA_HAP2_2	UniProtKB/TrEMBL
SMART	CBF	UniProtKB/TrEMBL
UniProt	A0A287D712	ENTREZGENE, UniProtKB/TrEMBL
	A0A287DFQ5	ENTREZGENE, UniProtKB/TrEMBL
	A0A287DGA6	ENTREZGENE, UniProtKB/TrEMBL
	I3MX32	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

RGD Manual Annotations

Send us a Message

Imported Disease Annotations - CTD

RGD Manual Annotations