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Gene: Lrpprc (leucine rich pentatricopeptide repeat containing) Ictidomys tridecemlineatus

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Symbol:

Lrpprc

Name:

leucine rich pentatricopeptide repeat containing

RGD ID:

12493347

Description:

ENCODES a protein that exhibits actin filament binding (ortholog); beta-tubulin binding (ortholog); RNA binding (ortholog); INVOLVED IN mitochondrial RNA catabolic process (ortholog); negative regulation of mitochondrial RNA catabolic process (ortholog); regulation of mitochondrial translation (ortholog); PARTICIPATES IN CRM1 export pathway; ASSOCIATED WITH epilepsy (ortholog); French Canadian Leigh disease (ortholog); genetic disease (ortholog); FOUND IN condensed nuclear chromosome (ortholog); cytoplasm (ortholog); cytoskeleton (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

leucine-rich PPR motif-containing protein, mitochondrial

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	36,532,488 - 36,638,283 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936508	7,961,079 - 8,068,228 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lrpprc	Squirrel	epilepsy		ISO	LRPPRC (Homo sapiens)	8554872	ClinVar Annotator: match by term: Seizures	ClinVar	PMID:25741868 and PMID:28492532
Lrpprc	Squirrel	French Canadian Leigh disease		ISO	LRPPRC (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:12529507 more ...
Lrpprc	Squirrel	French Canadian Leigh disease		ISO	LRPPRC (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:12529507 more ...
Lrpprc	Squirrel	genetic disease		ISO	LRPPRC (Homo sapiens)	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar	PMID:17576681 more ...
Lrpprc	Squirrel	holoprosencephaly 2		ISO	LRPPRC (Homo sapiens)	8554872	ClinVar Annotator: match by term: Holoprosencephaly 2	ClinVar	PMID:18791198 more ...
Lrpprc	Squirrel	Leigh disease		ISO	LRPPRC (Homo sapiens)	8554872	ClinVar Annotator: match by term: Leigh syndrome	ClinVar	PMID:25741868 and PMID:28492532
Lrpprc	Squirrel	Lynch syndrome		ISO	LRPPRC (Homo sapiens)	8554872	ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms	ClinVar	PMID:28492532
Lrpprc	Squirrel	sitosterolemia		ISO	LRPPRC (Homo sapiens)	8554872	ClinVar Annotator: match by term: Sitosterolemia	ClinVar	PMID:28492532
Lrpprc	Squirrel	Subacute Necrotizing Encephalopathy of Leigh, Infantile		ISO	LRPPRC (Homo sapiens)	8554872	ClinVar Annotator: match by term: Leigh's necrotizing encephalopathy	ClinVar	PMID:28492532

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lrpprc	Squirrel	French Canadian Leigh disease		ISO	LRPPRC (Homo sapiens)	7240710		OMIM

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lrpprc	Squirrel	mitochondrial RNA catabolic process	acts_upstream_of	ISO	MGI:5438913	9068941	PMID:22045337	MGI	PMID:22045337
Lrpprc	Squirrel	mitochondrial RNA catabolic process	acts_upstream_of	ISO	MGI:3857306	9068941	PMID:21880015	MGI	PMID:21880015
Lrpprc	Squirrel	negative regulation of mitochondrial RNA catabolic process	acts_upstream_of_or_within	ISO	MGI:3857306	9068941	PMID:21880015	MGI	PMID:21880015
Lrpprc	Squirrel	negative regulation of mitochondrial RNA catabolic process	acts_upstream_of_or_within	ISO	MGI:1916394	9068941	PMID:22045337	MGI	PMID:22045337
Lrpprc	Squirrel	negative regulation of mitochondrial RNA catabolic process	acts_upstream_of_or_within	ISO	MGI:5438913	9068941	PMID:22045337	MGI	PMID:22045337
Lrpprc	Squirrel	regulation of mitochondrial translation	acts_upstream_of_or_within	ISO	MGI:5438913	9068941	PMID:22045337	MGI	PMID:22045337
Lrpprc	Squirrel	regulation of mitochondrial translation	involved_in	IEA	PANTHER:PTN000612214	150520179		TreeGrafter	GO_REF:0000118

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lrpprc	Squirrel	condensed nuclear chromosome	located_in	ISO	LRPPRC (Homo sapiens)	9068941	PMID:12762840	HGNC-UCL	PMID:12762840
Lrpprc	Squirrel	cytoplasm	located_in	ISO	Lrpprc (Mus musculus)	9068941	PMID:12071956	MGI	PMID:12071956
Lrpprc	Squirrel	cytoskeleton	located_in	ISO	LRPPRC (Homo sapiens)	9068941	PMID:12762840	HGNC-UCL	PMID:12762840
Lrpprc	Squirrel	microtubule	located_in	ISO	LRPPRC (Homo sapiens)	9068941	PMID:21525035	UniProt	PMID:21525035
Lrpprc	Squirrel	mitochondrial matrix	located_in	ISO	LRPPRC (Homo sapiens)	9068941	PMID:23275553	FlyBase	PMID:23275553
Lrpprc	Squirrel	mitochondrial nucleoid	located_in	ISO	LRPPRC (Homo sapiens)	9068941	PMID:18063578	BHF-UCL	PMID:18063578
Lrpprc	Squirrel	mitochondrion	located_in	IEA	PANTHER:PTN000612214	150520179		TreeGrafter	GO_REF:0000118
Lrpprc	Squirrel	nucleus	located_in	IEA	PANTHER:PTN000612214	150520179		TreeGrafter	GO_REF:0000118
Lrpprc	Squirrel	perinuclear region of cytoplasm	located_in	ISO	LRPPRC (Homo sapiens)	9068941	PMID:12762840	HGNC-UCL	PMID:12762840
Lrpprc	Squirrel	ribonucleoprotein complex	part_of	ISO	Lrpprc (Mus musculus)	9068941	PMID:22045337	MGI	PMID:22045337

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lrpprc	Squirrel	actin filament binding	NOT\|enables	ISO	LRPPRC (Homo sapiens)	9068941	PMID:12762840	HGNC-UCL	PMID:12762840
Lrpprc	Squirrel	beta-tubulin binding	enables	ISO	LRPPRC (Homo sapiens)	9068941	PMID:12762840	HGNC-UCL	PMID:12762840
Lrpprc	Squirrel	mRNA 3'-UTR binding	enables	IEA	PANTHER:PTN000612214	150520179		TreeGrafter	GO_REF:0000118
Lrpprc	Squirrel	protein binding	enables	ISO	UniProtKB:O70343 and UniProtKB:Q9R1E0	9068941	PMID:17050673	IntAct	PMID:17050673
Lrpprc	Squirrel	protein binding	enables	ISO	UniProtKB:P63104	9068941	PMID:15161933 and PMID:36931259	IntAct	PMID:15161933 and PMID:36931259
Lrpprc	Squirrel	protein binding	enables	ISO	UniProtKB:Q9UBK2	9068941	PMID:17050673	IntAct	PMID:17050673
Lrpprc	Squirrel	protein binding	enables	ISO	UniProtKB:Q66K74	9068941	PMID:15907802	HGNC-UCL	PMID:15907802
Lrpprc	Squirrel	protein binding	enables	ISO	UniProtKB:P05067	9068941	PMID:25959826	IntAct	PMID:25959826
Lrpprc	Squirrel	protein binding	enables	ISO	UniProtKB:Q9GZT3	9068941	PMID:22045337 more ...	IntAct	PMID:22045337 more ...
Lrpprc	Squirrel	protein binding	enables	ISO	UniProtKB:P06730	9068941	PMID:19262567	IntAct	PMID:19262567
Lrpprc	Squirrel	RNA binding	enables	ISO	Lrpprc (Mus musculus)	9068941	PMID:21880015	MGI	PMID:21880015
Lrpprc	Squirrel	single-stranded DNA binding	enables	ISO	Lrpprc (Mus musculus)	9068941	PMID:12071956	MGI	PMID:12071956
Lrpprc	Squirrel	ubiquitin protein ligase binding	enables	ISO	UniProtKB:O60260	9068941	PMID:19725078	ParkinsonsUK-UCL	PMID:19725078

RGD Manual Annotations

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lrpprc	Squirrel	CRM1 export pathway		ISO	LRPPRC (Homo sapiens)	9068941		RGD	PMID:23583578 and REF_RGD_ID:9743967

PMID:22301074

Lrpprc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	36,532,488 - 36,638,283 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936508	7,961,079 - 8,068,228 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LRPPRC
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	43,886,224 - 43,996,265 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	43,886,224 - 43,996,226 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	44,113,363 - 44,223,128 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	43,968,391 - 44,076,648 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	44,026,537 - 44,134,795	NCBI
Celera	2	43,952,087 - 44,062,100 (-)	NCBI		Celera
Cytogenetic Map	2	p21	NCBI
HuRef	2	43,849,689 - 43,959,564 (-)	NCBI		HuRef
CHM1_1	2	44,042,771 - 44,152,581 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	43,891,557 - 44,001,630 (-)	NCBI		T2T-CHM13v2.0

Lrpprc
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	85,012,675 - 85,098,214 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	85,012,675 - 85,098,217 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	84,705,247 - 84,790,786 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	84,705,247 - 84,790,789 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	85,104,587 - 85,190,126 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	84,613,573 - 84,698,841 (-)	NCBI		MGSCv36	mm8
Celera	17	89,073,226 - 89,158,633 (-)	NCBI		Celera
Cytogenetic Map	17	E4	NCBI
cM Map	17	55.02	NCBI

Lrpprc
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	15,612,638 - 15,695,113 (+)	NCBI		GRCr8
mRatBN7.2	6	9,859,816 - 9,942,294 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	9,859,867 - 9,942,293 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	10,148,236 - 10,230,722 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	10,457,631 - 10,540,115 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	9,979,042 - 10,061,742 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	7,984,043 - 8,066,874 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	7,984,019 - 8,066,868 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	7,919,928 - 8,001,949 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	8,086,606 - 8,168,261 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	8,086,606 - 8,168,261 (-)	NCBI
Celera	6	9,581,533 - 9,663,935 (+)	NCBI		Celera
Cytogenetic Map	6	q12	NCBI

Lrpprc
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955441	11,012,910 - 11,116,965 (-)	NCBI	ChiLan1.0	ChiLan1.0

LRPPRC
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	82,421,380 - 82,530,685 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	82,425,351 - 82,535,405 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	43,975,949 - 44,083,846 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	44,914,578 - 45,021,434 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	44,914,578 - 45,021,434 (-)	Ensembl	panpan1.1		panPan2

LRPPRC
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	46,325,312 - 46,438,376 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	46,327,223 - 46,438,342 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	46,188,975 - 46,300,206 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	47,205,831 - 47,317,113 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	47,203,961 - 47,317,132 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	46,914,258 - 47,025,488 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	47,203,848 - 47,313,376 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	47,387,584 - 47,498,808 (-)	NCBI		UU_Cfam_GSD_1.0

LRPPRC
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	96,474,549 - 96,595,143 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	96,474,510 - 96,590,706 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	102,630,054 - 102,744,878 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LRPPRC
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	63,263,101 - 63,380,607 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666045	48,506,466 - 48,623,733 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lrpprc
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624738	25,338,098 - 25,452,676 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624738	25,340,588 - 25,452,593 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005324518	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010001352	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_005324518 ⟹ XP_005324575

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024406292	36,532,488 - 36,638,283 (+)	NCBI
SpeTri2.0	NW_004936508	7,961,079 - 8,068,228 (+)	NCBI

Sequence:

show sequence

GCCGGGTGACCCCGCCATCACGTGCTCCTCCTGTCCTTCTGGCTGAACGTGCATCCGCTGAGTGAACTGCCGACCCATGGCAGCCCTTTTGAGACCTGCCCGCTGGCTCTTGGGTGCCGGGTCGTCCC
TCCCGCTCTCCCTGCGTCTCCTCACGGGAGGCCCAGGTCGGCCGCACGCCGCCCCCTGTCTGCCCGCCGCTCGCGCCCGGCTTTTTGCGGGAAAACTACTAAGCCAAGTGAGGCTTTATGCCATTGTT
GCTGAAAAAAAGAATGATCTTCAAGAGGAGCCTACTTCTTCTTCTAGAAGGAATGCTAATCAATTTGATTGGGCTCTAATGAGACTGGATAATTCTGTCCGAAGAACTGGCCGCATTCCAAAGGGACT
TTTGCAAAAAGTCTTTGATAGCACATGTCGTTCAGGTAGCCCAGGTGGTAATCAAGCCTTGCTTCTGTTGCGCAGCTGTGGTTCTCTCTTGCCTGAATTGAATCTTGCAGAGAGAACAGAATTTGCTC
ATAGGATATGGGACAAACTTCAGACACTGGGCACTGTGTATGATGTGAGTCACTACAATGCTTTACTTAAAGTTTATCTTCAAAATGAATATAAATTCTCACCTACTGATTTCTTGGCAAAAATGGAG
GAAGCAAACATTCAGCCAAATCGAGTGACATACCAGAGGCTGATTGCTGCTTACTGTAATGTAGGAGATATTGAAGGTGCCAGCAAGATTCTTGGATTTATGAAAACTAAGGATCTTCCAGTCACAGA
GGCAGTGTTCAGTGCTCTTGTTACAGGGCATGCAAGAGCCGGAGATATGGAGAATGCAGAAAATATTCTCACTGTGATGAAAGATGCTGGAATAGAACCTGGTCCAGACACATTCCTAGCATTACTGA
ATGCATATGCTGAGAAGGGTGACATTGACCATGTTAAGCAGACTCTGGAGAAGGTGGATAAGTCTGAAGTTTACCTTATGGACCGTGATTTATTGCAAATTATCTTGAGCTTTAGTAAAGCTGGATAT
CCTCAGTATGTCTCAGAAATTTTGGAAAAAATTACCTATGAAAGAAGATATATTCCAGATGCAATGAACATCATTTTGCTTTTAGTCACTGAAAAGCTGGAAGATACAGCATTTCAGATTTTATTAGC
ATGCCCTATATCAAGAGAAGACAGCCCAAATGACTTTGGCAGTTTCTTTTTACGTCACTGTGTGACTATGGATACGCCTGCAGAGAAGCTAACCAACTACTGCAAGAAGTTAAAGGAAGCCAGGATGC
ATATGTCTCCTTTGCAGTTCACACTCCATTGTGCTTTACTAGCCAATAAAACAGACTTGGTAAAAGCTTTAATGAAGGCCATGAAAGAAGAAGGTTTTCCTGTCAGAGCTCACTATTTCTGGCCATTG
CTAGCTGGACATCAGAAGAAGAAAAATGTTCAAGGTATAATTGATGTCCTCAAAGGAATGCATGAAATGGGAATAAATCCCGATCAGGAGACTTATGTAAATTATGTGTTTCCAGCCTTTGATAGTAT
AAAGTCAGTACGTGCTGTTTTACAGAAAAATGAATGTCTACCTGAAAGTAATACGTTTTCTCAAGCTGAATTGAAAAGTGAAGCTGTAAATGGGAACTTGGACTACATTTTATCATTTTTGGAATCAA
ATACAGAGCCTTTTTCATTTAATTCTTTGAGAGGTAGCCTGATTCTAGGCTTTAGGAGGTCTATGAATATAGATCTTTGGAGCAAGATAACAGAATTGTTGTACAAGGATGGACGTTATTGCCAGGAG
CCTCCAGGACCAACGGAAGCTGTTGGCTATTTTCTTTATAACTTGATTGACAGCATGAGTGACTCAGAGGTACAGGCCAAGGAGGAGCGTTTGAGACAATACTTCCATCAGCTGAAGGAGATGAATAT
AAAAATTCCTGAAAGTATCTACAGAGGCATTCGAAATCTACTGGATAGCTACCATGTTCCTGAATTGATTAAGGATGTTAATATGATGGTTGAAAGAAAGAAGATAGACTCTCGTAAATCTCAGCAAC
TTACACCATCTGATTTGGAGTCTACACTTGAAAATCTAAAAGCTAAAAATCAACCTATAGGAGATGTCCTAAAGCAACTGATATTAATGCTTTGTTCAGAAGAGAATATGCAAAAAGCCCTTGAATTG
AAAGCAAAATATGAATCAGACATGGCTGTTGGTGGCTATGCAGCTTTAATAAATTTGTGCTGTAGACATGATAATGCAGAAGATGCACTGAACTTGAAGCAAGAATTTGACCGTTTAGATCCATCTGC
TGTCCTTGACACCAACAAGTATGTAGGCCTCGTAAAAGTATTGGGAAAGCATGGCAAGCTCCAAGATGCTATTAACATTCTAAAGGAGATGAAAGAGAAGGATGTTCTTATCAAAGATGCAACAGTCT
TGTCCTTTTTCCACATCCTAAATGGTGCTGCTTTAAGAGGTGAAATTGAAACAGTAAAACAGCTGCATGAAGCCATCGTCACTCTAGGGTTAGCAAAACCATCTACCAACATAAGTTTCCCATTGGTC
ACTGTACACCTGGAAAAGGATGACTTGTATGCTGCTCTTCAAGCTACCATTGACTGCTATGAAAAGTATAAAATATTACCAAGGATTCATGATGTCTTATGTAAACTCATAGAGAAAGGCGAGACAGA
TCTAATCCAGAAAGCAATGGACTTTGTGAGCCAAGAACAAGGTGAAATGACGATGCTCTATGATCTCTTCTTTGCTTTCCTACAAACAGGAAATTACAAAGAGGCCAAGAAGATCATTGAGACACCAG
GCATTAGAGCTCGACCTACAAGACTTCAGTGGTTTTGTGATAGATGTATCACTAGTAATCAGGTTGAAGCTCTGGAAAAATTAGTGGAGCTGACACAAAAGCTATTTGAGTGCGATAGAGACCAGATG
TACTTCAATCTGCTAAAACTATACAAAGCAAATGGTGACTGGCAAAGAGCTGATGCTGCCTGGAATAAAATGCAAGAAGAAAACGTTATTCCTCGTGAGAAGACATTAAGATTATTAGCAGAAATCCT
TAAAAACAGTAACCAGGAAGTTCCATTTGATGTTCCTGAGATGTGGTATGAAGATGATAAACATTCCCTGACTATTTCTTCATCACCCTCACCTGTGGAAACTAATCTAGAGAAAGATTTGTTGAACA
CCTGCCGAATGAAGAGGAACAGAGATGCATATAATATCTTCCTGAAAGCACAAAGGCAAAACATTGTATTTAGCAGTGAAACTTACAACAAACTAATACAATTACTGTTGTCAAAGGATAGTTTTCCA
CAGGCAATGCAAGTTAAAGATTTCGCTGAGACCCACATCAAGGGCTTCGCACTGAACGATGCTGCCAACAGCCTCCTCATCATAACGCAAGTTAGGCGGGATTATTTGAAAGCTGCTCTAACAACTCT
GAAAACAGCCTTGGATTTGAAGCAGATTCCCTCTAGATTGTCAGTGACCCGCCTTATCCAGGCATTTGCCTTGAAGGGTGACATACAAAGCATAGAAGCAATTCAGAAGATGGTAAATGGACTTGACT
CAATTGGACTCTCCAACATGGTTTTCATCAATAACATTGCTCTGGCACAAATAAAGAACAATAACATCGATGTTGCCATAGAAAACATTGAAAATATGCTTACTTCAGGGAATCAAACCATAGAACCT
CAGTACTTTGGCTTGGCATATTTATTCAGAAAGGTAATAGAGGAGCAGATAGAACCAGCAGTTGAAAAGTTAAGCATCATGGCAGAGAGATTGGCCAATCAGTTTGCAGTTTATAAACCTGTCACCGA
TCTTTTCCTTCAGCTCATGGGTTCGGGCAAGGTGGATGATGCCAGAGCTCTCCTACAGAGATGTGGAGCAATTGCTGAACAAACCTCAATTTTGTCACTATTCTGTATCAGGAGTTCTCAGAAACCAG
GAACGGCACCAGTTCTGACGTCTTTATTAGAATTGATTCCTGAATTATGTGAAAAGGAGGAAGCATACTCTTCTACCATGAAAAGCTATGTCTTGGACAAAGATGTTGCATCAGCTAAAGCACTCTAT
GAACGTTTGACTGCAAAGAACATAAAGTTGAATGATCTGTTTCTAAAACGTTATGCGGTTTTGCTGAAGCATGCTGGAGAACCTGTCCCTTTCACTGAGCCTCCTGAAAGCTTTGAATTTTATATAAA
GCAGCTAAAGGAATCAAAGGAAACCCCTTCATGAAATGAACAGTCACTGCATTGTTTTGTGTGTATTTGTGATCCTGTGTCTAAATGTTATTTTTAAGATGTACTTGACAGGAAAAAATAAATAAATG
AAAAATTACTTTGTTTATGTATCTTTTATTGTAATGTATGATCCAGCACCTTATTGACAATAACTGAGTACACTTTGTTGCTAGTCCTTTTTAATTTTCGGTGTACAATATAAATCTATTTTCTTTTA
AGGCTTCTTGGGTATGAAGTCATAATTTTTCAGGGATCTTTTCTCATTTGACTCCAGTTACTCCGCTCTATTAAATTTATTATTTTCATAAAAATATTATTCTTTTATTGAAGTCTTGTTTATTAGTA
TTTATCTGAAAGATTTGAATAAAATGATGCTCAGTGAGCCTCTTATTGCTTAAAATTCTAGTATATAACAATAGCTTATTTATATGTTAAGTCGAGTCATCAAATCTTGAATTTGCCATTGCTCAGTG
AGAAGCAGAGACCCTCGATTGTTCTTGGTCAGGATTCTGTCTGCCAGTGCCTGGTGGCTACTTGTCATACTTTCTTGCCATCTCCCACAGTGATTTCTGTGAGCTTCTATTCATAGAAGCCCCTAATA
TTGGGTCTTGCACATGATTTTTCATGAAGTAGAGCTATGCATTTGTTTTTGTTTTGGTTTCAGGACTTTGTCAGTACAAGCTGAACCCTTCACCAGGCTCATTATTAGCTCATATGCTGTAAATATTG
TGAAAAAGTAAAATCTTGGTCTAATCAAATGTATCCCCATGTCAGGTCTCTTCCTTGTGAGGACATGAAAACTACATTTTGAGTAGTTACTTAAAAACAAACAAACAAACACTTAAGATAGGCAGTCA
AGAAAGTTTAGCAGTACTAACATAAGTGAGACCTAAGTAGAAGTCTTGGTCAGTGCTAGGTCCCAGCCTGGGGCTTCCTCTGCACATAGAATTGTTTGATTTGGCCAGAGCCTCACTCTGAGCACTTG
TCCCTAGGATGACTCCACTAAAACAGGCGTTACTTTTTGCAGTCATGCTACCCCCAAAGTATTTGAGCTAAGTGTTACTGATATGCATTAAACTATGTCTCCAAGTAAGACATAACCTTGGGACTTCA
GAGTTGTCTTTGGGAATGTGAACTATAATCTCATTTATATGAAGTGAGTAAAATTCAGATATGATGTAAGTGTAGTAATTATATGTCCTCCTGGTCTTATGAGTGCTTTCTAAATATCTCATAGCCAC
ATTGAAATAAATAGGCCAATTATAGCAGCACAATTTTCTCTCAAATTATAAGAATACAGCTAATTCTGAAAAGTAAATATGTCATTGTAAACTTTTAGGAAGTATAGTATTTTGTATATAATTATATG
TTCAACTATTGGAAACTAATATAATTTAAATGTGAATTGCTTTGAATAAAGGGTACTCCAACTA

hide sequence


Protein RefSeqs	XP_005324575	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000010042.2
	ENSSTOP00000029316.1
GenBank Protein	KAG3267387	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005324575 ⟸ XM_005324518

- UniProtKB:

I3MGV5 (UniProtKB/TrEMBL), A0A287D728 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAALLRPARWLLGAGSSLPLSLRLLTGGPGRPHAAPCLPAARARLFAGKLLSQVRLYAIVAEKKNDLQEEPTSSSRRNANQFDWALMRLDNSVRRTGRIPKGLLQKVFDSTCRSGSPGGNQALLLLRS
CGSLLPELNLAERTEFAHRIWDKLQTLGTVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRLIAAYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARAGDMENAENILTV
MKDAGIEPGPDTFLALLNAYAEKGDIDHVKQTLEKVDKSEVYLMDRDLLQIILSFSKAGYPQYVSEILEKITYERRYIPDAMNIILLLVTEKLEDTAFQILLACPISREDSPNDFGSFFLRHCVTMDT
PAEKLTNYCKKLKEARMHMSPLQFTLHCALLANKTDLVKALMKAMKEEGFPVRAHYFWPLLAGHQKKKNVQGIIDVLKGMHEMGINPDQETYVNYVFPAFDSIKSVRAVLQKNECLPESNTFSQAELK
SEAVNGNLDYILSFLESNTEPFSFNSLRGSLILGFRRSMNIDLWSKITELLYKDGRYCQEPPGPTEAVGYFLYNLIDSMSDSEVQAKEERLRQYFHQLKEMNIKIPESIYRGIRNLLDSYHVPELIKD
VNMMVERKKIDSRKSQQLTPSDLESTLENLKAKNQPIGDVLKQLILMLCSEENMQKALELKAKYESDMAVGGYAALINLCCRHDNAEDALNLKQEFDRLDPSAVLDTNKYVGLVKVLGKHGKLQDAIN
ILKEMKEKDVLIKDATVLSFFHILNGAALRGEIETVKQLHEAIVTLGLAKPSTNISFPLVTVHLEKDDLYAALQATIDCYEKYKILPRIHDVLCKLIEKGETDLIQKAMDFVSQEQGEMTMLYDLFFA
FLQTGNYKEAKKIIETPGIRARPTRLQWFCDRCITSNQVEALEKLVELTQKLFECDRDQMYFNLLKLYKANGDWQRADAAWNKMQEENVIPREKTLRLLAEILKNSNQEVPFDVPEMWYEDDKHSLTI
SSSPSPVETNLEKDLLNTCRMKRNRDAYNIFLKAQRQNIVFSSETYNKLIQLLLSKDSFPQAMQVKDFAETHIKGFALNDAANSLLIITQVRRDYLKAALTTLKTALDLKQIPSRLSVTRLIQAFALK
GDIQSIEAIQKMVNGLDSIGLSNMVFINNIALAQIKNNNIDVAIENIENMLTSGNQTIEPQYFGLAYLFRKVIEEQIEPAVEKLSIMAERLANQFAVYKPVTDLFLQLMGSGKVDDARALLQRCGAIA
EQTSILSLFCIRSSQKPGTAPVLTSLLELIPELCEKEEAYSSTMKSYVLDKDVASAKALYERLTAKNIKLNDLFLKRYAVLLKHAGEPVPFTEPPESFEFYIKQLKESKETPS

hide sequence

Protein Domains

PROP1-like PPR

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000011185	UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000011197.3	UniProtKB/TrEMBL
	ENSSTOT00000042408.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.10	UniProtKB/TrEMBL
InterPro	LRP130	UniProtKB/TrEMBL
	Pentatricopeptide_repeat	UniProtKB/TrEMBL
	PPR_long	UniProtKB/TrEMBL
	TPR-like_helical_dom_sf	UniProtKB/TrEMBL
NCBI Gene	Lrpprc	ENTREZGENE
PANTHER	LEUCINE-RICH PPR MOTIF-CONTAINING PROTEIN, MITOCHONDRIAL	UniProtKB/TrEMBL
	PTHR46669	UniProtKB/TrEMBL
Pfam	PPR	UniProtKB/TrEMBL
	PPR_3	UniProtKB/TrEMBL
	PPR_long	UniProtKB/TrEMBL
PROSITE	PPR	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48452	UniProtKB/TrEMBL
UniProt	A0A287D728	ENTREZGENE, UniProtKB/TrEMBL
	I3MGV5	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar

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