Slc10a6 (solute carrier family 10 member 6) - Rat Genome Database

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Gene: Slc10a6 (solute carrier family 10 member 6) Ictidomys tridecemlineatus
Analyze
Symbol: Slc10a6
Name: solute carrier family 10 member 6
RGD ID: 12482876
Description: ENCODES a protein that exhibits sodium-dependent organic anion transmembrane transporter activity (ortholog); INVOLVED IN sodium-dependent organic anion transport (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405285267,434 - 295,595 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936920285,185 - 309,494 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936920285,185 - 310,395 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc10a6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405285267,434 - 295,595 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936920285,185 - 309,494 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936920285,185 - 310,395 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC10A6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38486,823,468 - 86,849,384 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl486,823,468 - 86,849,384 (-)EnsemblGRCh38hg38GRCh38
GRCh37487,744,621 - 87,770,537 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36487,963,865 - 87,989,292 (-)NCBINCBI36Build 36hg18NCBI36
Celera485,034,180 - 85,059,864 (-)NCBICelera
Cytogenetic Map4q21.3NCBI
HuRef483,489,562 - 83,515,298 (-)NCBIHuRef
CHM1_1487,721,091 - 87,746,835 (-)NCBICHM1_1
T2T-CHM13v2.0490,152,961 - 90,178,806 (-)NCBIT2T-CHM13v2.0
Slc10a6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395103,753,583 - 103,777,152 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5103,753,577 - 103,777,269 (-)EnsemblGRCm39 Ensembl
GRCm385103,605,711 - 103,629,403 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5103,605,711 - 103,629,403 (-)EnsemblGRCm38mm10GRCm38
MGSCv375104,034,730 - 104,058,422 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365103,846,013 - 103,869,705 (-)NCBIMGSCv36mm8
Celera5100,917,865 - 100,940,762 (-)NCBICelera
Cytogenetic Map5E5NCBI
cM Map550.45NCBI
Slc10a6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8146,385,348 - 6,407,532 (+)NCBIGRCr8
mRatBN7.2146,080,716 - 6,102,902 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl146,080,717 - 6,103,037 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx146,048,649 - 6,069,672 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0147,348,900 - 7,369,923 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0146,048,316 - 6,069,396 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0147,618,022 - 7,682,377 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl147,618,022 - 7,682,377 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0147,592,605 - 7,656,400 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4147,270,695 - 7,292,036 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1147,270,694 - 7,292,036 (+)NCBI
Celera146,219,788 - 6,240,844 (+)NCBICelera
Cytogenetic Map14p22NCBI
Slc10a6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554742,951,052 - 2,980,980 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554742,949,773 - 2,982,458 (+)NCBIChiLan1.0ChiLan1.0
SLC10A6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2384,841,136 - 84,866,991 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1485,103,155 - 85,128,997 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0479,126,941 - 79,152,786 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1489,855,914 - 89,881,523 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl489,855,914 - 89,881,523 (-)Ensemblpanpan1.1panPan2
SLC10A6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13210,334,148 - 10,362,302 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3210,279,831 - 10,386,298 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3231,591,788 - 31,619,733 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03210,357,252 - 10,385,414 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3210,357,112 - 10,385,275 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13210,468,259 - 10,496,648 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03210,295,452 - 10,323,394 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03229,631,508 - 29,659,716 (+)NCBIUU_Cfam_GSD_1.0
SLC10A6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8131,997,314 - 132,021,981 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18131,997,359 - 132,023,739 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28141,308,101 - 141,336,069 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC10A6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1735,203,853 - 35,230,698 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl735,203,853 - 35,229,199 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603713,899,317 - 13,925,334 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc10a6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248723,411,622 - 3,453,627 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248723,411,860 - 3,438,525 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000011404   ⟹   ENSSTOP00000010234
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936920285,185 - 309,494 (+)Ensembl
RefSeq Acc Id: XM_005341934   ⟹   XP_005341991
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405285271,255 - 295,595 (-)NCBI
SpeTri2.0NW_004936920285,185 - 310,395 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005736920
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405285267,434 - 295,594 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005341991 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000010234.2
GenBank Protein KAG3276290 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005341991   ⟸   XM_005341934
- UniProtKB: I3MH99 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000010234   ⟸   ENSSTOT00000011404


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000011406 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000011404.3 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1530.20 UniProtKB/TrEMBL
InterPro BilAc:Na_symport/Acr3 UniProtKB/TrEMBL
  Bilac:Na_transpt UniProtKB/TrEMBL
  Na+/solute_symporter_sf UniProtKB/TrEMBL
NCBI Gene Slc10a6 ENTREZGENE
PANTHER PTHR10361 UniProtKB/TrEMBL
  PTHR10361:SF55 UniProtKB/TrEMBL
Pfam SBF UniProtKB/TrEMBL
UniProt I3MH99 ENTREZGENE, UniProtKB/TrEMBL