Slc10a6 (solute carrier family 10 member 6) - Rat Genome Database

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Gene: Slc10a6 (solute carrier family 10 member 6) Heterocephalus glaber
Analyze
Symbol: Slc10a6
Name: solute carrier family 10 member 6
RGD ID: 18912898
Description: ENCODES a protein that exhibits sodium-dependent organic anion transmembrane transporter activity (ortholog); INVOLVED IN sodium-dependent organic anion transport (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: solute carrier family 10 (sodium/bile acid cotransporter family), member 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248723,411,622 - 3,453,627 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248723,411,860 - 3,438,525 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc10a6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248723,411,622 - 3,453,627 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248723,411,860 - 3,438,525 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SLC10A6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38486,823,468 - 86,849,384 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl486,823,468 - 86,849,384 (-)EnsemblGRCh38hg38GRCh38
GRCh37487,744,621 - 87,770,537 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36487,963,865 - 87,989,292 (-)NCBINCBI36Build 36hg18NCBI36
Celera485,034,180 - 85,059,864 (-)NCBICelera
Cytogenetic Map4q21.3NCBI
HuRef483,489,562 - 83,515,298 (-)NCBIHuRef
CHM1_1487,721,091 - 87,746,835 (-)NCBICHM1_1
T2T-CHM13v2.0490,152,961 - 90,178,806 (-)NCBIT2T-CHM13v2.0
Slc10a6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395103,753,583 - 103,777,152 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5103,753,577 - 103,777,269 (-)EnsemblGRCm39 Ensembl
GRCm385103,605,711 - 103,629,403 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5103,605,711 - 103,629,403 (-)EnsemblGRCm38mm10GRCm38
MGSCv375104,034,730 - 104,058,422 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365103,846,013 - 103,869,705 (-)NCBIMGSCv36mm8
Celera5100,917,865 - 100,940,762 (-)NCBICelera
Cytogenetic Map5E5NCBI
cM Map550.45NCBI
Slc10a6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8146,385,348 - 6,407,532 (+)NCBIGRCr8
mRatBN7.2146,080,716 - 6,102,902 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl146,080,717 - 6,103,037 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx146,048,649 - 6,069,672 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0147,348,900 - 7,369,923 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0146,048,316 - 6,069,396 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0147,618,022 - 7,682,377 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl147,618,022 - 7,682,377 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0147,592,605 - 7,656,400 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4147,270,695 - 7,292,036 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1147,270,694 - 7,292,036 (+)NCBI
Celera146,219,788 - 6,240,844 (+)NCBICelera
Cytogenetic Map14p22NCBI
Slc10a6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554742,951,052 - 2,980,980 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554742,949,773 - 2,982,458 (+)NCBIChiLan1.0ChiLan1.0
SLC10A6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2384,841,136 - 84,866,991 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1485,103,155 - 85,128,997 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0479,126,941 - 79,152,786 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1489,855,914 - 89,881,523 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl489,855,914 - 89,881,523 (-)Ensemblpanpan1.1panPan2
SLC10A6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13210,334,148 - 10,362,302 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3210,279,831 - 10,386,298 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3231,591,788 - 31,619,733 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03210,357,252 - 10,385,414 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3210,357,112 - 10,385,275 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13210,468,259 - 10,496,648 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03210,295,452 - 10,323,394 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03229,631,508 - 29,659,716 (+)NCBIUU_Cfam_GSD_1.0
Slc10a6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405285267,434 - 295,595 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936920285,185 - 309,494 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936920285,185 - 310,395 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC10A6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8131,997,314 - 132,021,981 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18131,997,359 - 132,023,739 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28141,308,101 - 141,336,069 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC10A6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1735,203,853 - 35,230,698 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl735,203,853 - 35,229,199 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603713,899,317 - 13,925,334 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000001737   ⟹   ENSHGLP00000001692
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248723,411,622 - 3,453,627 (-)Ensembl
RefSeq Acc Id: XM_021248802   ⟹   XP_021104461
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248723,411,860 - 3,438,525 (-)NCBI
RefSeq Acc Id: XM_021248803   ⟹   XP_021104462
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248723,411,860 - 3,437,018 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021104461 (Get FASTA)   NCBI Sequence Viewer  
  XP_021104462 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000001692
  ENSHGLP00100023694
GenBank Protein JAN99384 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021104461   ⟸   XM_021248802
- Peptide Label: isoform X1
- UniProtKB: G5C954 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104462   ⟸   XM_021248803
- Peptide Label: isoform X2
- UniProtKB: A0A0P6J4X8 (UniProtKB/TrEMBL),   G5C954 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000001692   ⟸   ENSHGLT00000001737


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001287 Ensembl, ENTREZGENE
  ENSHGLG00100017411 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000001737 ENTREZGENE
  ENSHGLT00100023936 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1530.20 UniProtKB/TrEMBL
InterPro BilAc:Na_symport/Acr3 UniProtKB/TrEMBL
  Bilac:Na_transpt UniProtKB/TrEMBL
  Na+/solute_symporter_sf UniProtKB/TrEMBL
NCBI Gene Slc10a6 ENTREZGENE
PANTHER PTHR10361 UniProtKB/TrEMBL
  PTHR10361:SF55 UniProtKB/TrEMBL
Pfam SBF UniProtKB/TrEMBL
UniProt A0A0P6J4X8 ENTREZGENE, UniProtKB/TrEMBL
  G5C954 ENTREZGENE, UniProtKB/TrEMBL