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Gene: Snrpe (small nuclear ribonucleoprotein polypeptide E) Ictidomys tridecemlineatus

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Symbol:

Snrpe

Name:

small nuclear ribonucleoprotein polypeptide E

RGD ID:

12476174

Description:

ENCODES a protein that exhibits U1 snRNP binding (ortholog); INVOLVED IN mRNA processing (inferred); mRNA splicing, via spliceosome (inferred); RNA splicing (inferred); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN U1 snRNP (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

small nuclear ribonucleoprotein E

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	71,614,687 - 71,620,608 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936567	849,397 - 855,187 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936567	849,300 - 855,214 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Snrpe	Squirrel	acute lymphoblastic leukemia	severity	ISO	RGD:1313167	9068941	mRNA:decreased expression:bone marrow, blood, mononuclear cell (human)	RGD	PMID:23915977\|REF_RGD_ID:10768836
Snrpe	Squirrel	hepatocellular carcinoma		ISO	RGD:1313167	9068941	human gene in a mouse model	RGD	PMID:21688285\|REF_RGD_ID:10768833
Snrpe	Squirrel	hypogonadism		ISO	RGD:1313168	9068941	DNA:missense mutation:cds:p.E51D (mouse)	RGD	PMID:22258617\|REF_RGD_ID:10768832
Snrpe	Squirrel	hypotrichosis 1		ISO	RGD:1313167	9068941	DNA:snp:cds:c.1A>G (human)	RGD	PMID:23246290\|REF_RGD_ID:10768831
Snrpe	Squirrel	lung adenocarcinoma	severity	ISO	RGD:1313167	9068941	mRNA:increased expression:lung (human)	RGD	PMID:22876301\|REF_RGD_ID:10768834
Snrpe	Squirrel	lupus nephritis	treatment	ISO	RGD:1313167	9068941	mouse model	RGD	PMID:15494537\|REF_RGD_ID:10760401
Snrpe	Squirrel	lupus nephritis	treatment	ISO	RGD:2321675	9068941	mouse model	RGD	PMID:15494537\|REF_RGD_ID:10760401
Snrpe	Squirrel	lupus nephritis	treatment	ISO	RGD:1313168	9068941	mouse model	RGD	PMID:15494537\|REF_RGD_ID:10760401
Snrpe	Squirrel	nasopharynx carcinoma		ISO	RGD:1313167	9068941	mRNA:increased expression:nasopharynx (human)	RGD	PMID:24080422\|REF_RGD_ID:10755709
Snrpe	Squirrel	neuroblastoma	severity	ISO	RGD:1313167	9068941	mRNA:decreased expression:neuroblastoma (human)	RGD	PMID:17075126\|REF_RGD_ID:10755762
Snrpe	Squirrel	prostate cancer	severity	ISO	RGD:1313167	9068941	mRNA:increased expression:prostate gland (human)	RGD	PMID:22740892\|REF_RGD_ID:10768830

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Snrpe	Squirrel	familial adult myoclonic epilepsy 5		ISO	RGD:1313167	8554872	ClinVar Annotator: match by term: Epilepsy, familial adult myoclonic, 5	ClinVar	PMID:28492532
Snrpe	Squirrel	gastrointestinal stromal tumor		ISO	RGD:1313167	8554872	ClinVar Annotator: match by term: Gastrointestinal stromal tumor	ClinVar	PMID:28492532
Snrpe	Squirrel	Hypokalemic Periodic Paralysis, Type 1		ISO	RGD:1313167	8554872	ClinVar Annotator: match by term: Hypokalemic periodic paralysis, type 1	ClinVar	PMID:28492532
Snrpe	Squirrel	hypotrichosis 11		ISO	RGD:1313167	8554872	ClinVar Annotator: match by term: Hypotrichosis 11	ClinVar	PMID:23246290\|PMID:25741868\|PMID:28492532\|PMID:33792916\|PMID:9621144
Snrpe	Squirrel	parathyroid carcinoma		ISO	RGD:1313167	8554872	ClinVar Annotator: match by term: Parathyroid carcinoma	ClinVar	PMID:28492532

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Snrpe	Squirrel	hypotrichosis		ISO	RGD:1313167	9068941	CTD Direct Evidence: marker/mechanism	CTD

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Snrpe	Squirrel	hypotrichosis 11		ISO	RGD:1313167	7240710		OMIM

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Snrpe	Squirrel	mRNA processing	involved_in	IEA	UniProtKB-KW:KW-0507	150520179		UniProt	GO_REF:0000043
Snrpe	Squirrel	mRNA splicing, via spliceosome	involved_in	IEA	InterPro:IPR027078	150520179		InterPro	GO_REF:0000002
Snrpe	Squirrel	mRNA splicing, via spliceosome	involved_in	IEA	UniProtKB:P62304\|ensembl:ENSP00000400591	150520179		Ensembl	GO_REF:0000107
Snrpe	Squirrel	RNA splicing	involved_in	IEA	UniProtKB-KW:KW-0508	150520179		UniProt	GO_REF:0000043
Snrpe	Squirrel	spliceosomal snRNP assembly	involved_in	IEA	UniProtKB:P62304\|ensembl:ENSP00000400591	150520179		Ensembl	GO_REF:0000107
Snrpe	Squirrel	spliceosomal snRNP assembly	involved_in	IEA	UniRule:UR000931776	150520179		UniProt	GO_REF:0000104

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Snrpe	Squirrel	catalytic step 2 spliceosome	part_of	IEA	UniProtKB:P62304\|ensembl:ENSP00000400591	150520179		Ensembl	GO_REF:0000107
Snrpe	Squirrel	cytosol	located_in	IEA	UniProtKB-SubCell:SL-0091	150520179		UniProt	GO_REF:0000044
Snrpe	Squirrel	cytosol	located_in	IEA	UniProtKB:P62304\|ensembl:ENSP00000400591	150520179		Ensembl	GO_REF:0000107
Snrpe	Squirrel	methylosome	part_of	IEA	UniProtKB:P62304\|ensembl:ENSP00000400591	150520179		Ensembl	GO_REF:0000107
Snrpe	Squirrel	nucleus	located_in	IEA	UniRule:UR000931776	150520179		UniProt	GO_REF:0000104
Snrpe	Squirrel	nucleus	located_in	IEA	UniProtKB:P62304\|ensembl:ENSP00000400591	150520179		Ensembl	GO_REF:0000107
Snrpe	Squirrel	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	150520179		UniProt	GO_REF:0000043
Snrpe	Squirrel	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	150520179		UniProt	GO_REF:0000044
Snrpe	Squirrel	pICln-Sm protein complex	part_of	IEA	UniProtKB:P62304\|ensembl:ENSP00000400591	150520179		Ensembl	GO_REF:0000107
Snrpe	Squirrel	ribonucleoprotein complex	part_of	IEA	UniProtKB-KW:KW-0687	150520179		UniProt	GO_REF:0000043
Snrpe	Squirrel	SMN-Sm protein complex	part_of	IEA	UniProtKB:P62304\|ensembl:ENSP00000400591	150520179		Ensembl	GO_REF:0000107
Snrpe	Squirrel	spliceosomal complex	part_of	IEA	InterPro:IPR027078	150520179		InterPro	GO_REF:0000002
Snrpe	Squirrel	spliceosomal complex	part_of	IEA	UniProtKB:P62304\|ensembl:ENSP00000400591	150520179		Ensembl	GO_REF:0000107
Snrpe	Squirrel	spliceosomal complex	part_of	IEA	UniProtKB-KW:KW-0747	150520179		UniProt	GO_REF:0000043
Snrpe	Squirrel	telomerase holoenzyme complex	part_of	IEA	UniProtKB:P62304\|ensembl:ENSP00000400591	150520179		Ensembl	GO_REF:0000107
Snrpe	Squirrel	U1 snRNP		ISO	RGD:2321675	9068941		RGD	PMID:16502463\|REF_RGD_ID:10448962
Snrpe	Squirrel	U1 snRNP	part_of	IEA	UniProtKB:P62304\|ensembl:ENSP00000400591	150520179		Ensembl	GO_REF:0000107
Snrpe	Squirrel	U1 snRNP	part_of	IEA	UniRule:UR000931776	150520179		UniProt	GO_REF:0000104
Snrpe	Squirrel	U12-type spliceosomal complex	part_of	IEA	UniProtKB:P62304\|ensembl:ENSP00000400591	150520179		Ensembl	GO_REF:0000107
Snrpe	Squirrel	U2 snRNP	part_of	IEA	UniRule:UR000931776	150520179		UniProt	GO_REF:0000104
Snrpe	Squirrel	U2-type catalytic step 2 spliceosome	part_of	IEA	UniProtKB:P62304\|ensembl:ENSP00000400591	150520179		Ensembl	GO_REF:0000107
Snrpe	Squirrel	U2-type precatalytic spliceosome	part_of	IEA	UniProtKB:P62304\|ensembl:ENSP00000400591	150520179		Ensembl	GO_REF:0000107
Snrpe	Squirrel	U2-type spliceosomal complex	part_of	IEA	UniProtKB:P62304\|ensembl:ENSP00000400591	150520179		Ensembl	GO_REF:0000107
Snrpe	Squirrel	U4 snRNP	part_of	IEA	UniRule:UR000931776	150520179		UniProt	GO_REF:0000104
Snrpe	Squirrel	U4 snRNP	part_of	IEA	UniProtKB:P62304\|ensembl:ENSP00000400591	150520179		Ensembl	GO_REF:0000107
Snrpe	Squirrel	U4/U6 x U5 tri-snRNP complex	part_of	IEA	UniRule:UR000931776	150520179		UniProt	GO_REF:0000104
Snrpe	Squirrel	U4/U6 x U5 tri-snRNP complex	part_of	IEA	UniProtKB:P62304\|ensembl:ENSP00000400591	150520179		Ensembl	GO_REF:0000107
Snrpe	Squirrel	U5 snRNP	part_of	IEA	UniRule:UR000931776	150520179		UniProt	GO_REF:0000104
Snrpe	Squirrel	U7 snRNP	part_of	IEA	UniProtKB:P62304\|ensembl:ENSP00000400591	150520179		Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Snrpe	Squirrel	protein binding	enables	ISO	UniProtKB:Q16637	9068941	PMID:10500148	UniProt	PMID:10500148
Snrpe	Squirrel	protein binding	enables	ISO	UniProtKB:P62306\|UniProtKB:Q15428\|UniProtKB:Q8TEQ6\|UniProtKB:Q8WXD5\|UniProtKB:Q9Y333	9068941	PMID:28514442	IntAct	PMID:28514442
Snrpe	Squirrel	protein binding	enables	ISO	UniProtKB:P62306\|UniProtKB:P62308	9068941	PMID:18984161, PMID:9417867	IntAct	PMID:18984161\|PMID:9417867
Snrpe	Squirrel	protein binding	enables	ISO	UniProtKB:Q8TEQ6	9068941	PMID:11714716	IntAct	PMID:11714716
Snrpe	Squirrel	protein binding	enables	ISO	UniProtKB:Q8WXD5	9068941	PMID:11748230, PMID:15939020	UniProt	PMID:11748230\|PMID:15939020
Snrpe	Squirrel	protein binding	enables	ISO	UniProtKB:O14893\|UniProtKB:P62306\|UniProtKB:P62308	9068941	PMID:31799625	UniProt	PMID:31799625
Snrpe	Squirrel	protein binding	enables	ISO	UniProtKB:P62306\|UniProtKB:P62308\|UniProtKB:Q9Y4Y9	9068941	PMID:32296183	IntAct	PMID:32296183
Snrpe	Squirrel	protein binding	enables	ISO	UniProtKB:P62308	9068941	PMID:30021884	IntAct	PMID:30021884
Snrpe	Squirrel	protein binding	enables	ISO	UniProtKB:Q9Y333\|UniProtKB:Q9Y4Y9	9068941	PMID:15231747	IntAct	PMID:15231747
Snrpe	Squirrel	protein binding	enables	ISO	UniProtKB:Q9Y333	9068941	PMID:14667819	IntAct	PMID:14667819
Snrpe	Squirrel	protein binding	enables	ISO	UniProtKB:Q15428	9068941	PMID:17332742	IntAct	PMID:17332742
Snrpe	Squirrel	protein binding	enables	ISO	UniProtKB:Q9H840	9068941	PMID:12065586	UniProt	PMID:12065586
Snrpe	Squirrel	protein binding	enables	ISO	UniProtKB:P62306\|UniProtKB:P62308\|UniProtKB:Q15428\|UniProtKB:Q8TEQ6\|UniProtKB:Q8WXD5\|UniProtKB:Q9Y333\|UniProtKB:Q9Y4Y9	9068941	PMID:33961781	IntAct	PMID:33961781
Snrpe	Squirrel	protein binding	enables	ISO	UniProtKB:P62306	9068941	PMID:22365833, PMID:35271311	IntAct	PMID:22365833\|PMID:35271311
Snrpe	Squirrel	RNA binding	enables	IEA	InterPro:IPR047575	150520179		InterPro	GO_REF:0000002
Snrpe	Squirrel	RNA binding	enables	IEA	UniProtKB-KW:KW-0694	150520179		UniProt	GO_REF:0000043
Snrpe	Squirrel	U1 snRNP binding		ISO	RGD:2321675	9068941		RGD	PMID:16502463\|REF_RGD_ID:10448962

RGD Manual Annotations

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Snrpe	Squirrel	spliceosome pathway		ISO	RGD:1313167	9068941		RGD	PMID:17537823\|PMID:19239890\|REF_RGD_ID:9686089\|REF_RGD_ID:9686091

PMID:22301074	PMID:30032202

Snrpe
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	71,614,687 - 71,620,608 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936567	849,397 - 855,187 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936567	849,300 - 855,214 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SNRPE
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	203,861,599 - 203,871,152 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	203,861,599 - 203,871,152 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	203,830,727 - 203,840,280 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	202,097,363 - 202,106,903 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	200,562,396 - 200,571,935	NCBI
Celera	1	176,966,084 - 176,975,627 (+)	NCBI		Celera
Cytogenetic Map	1	q32.1	NCBI
HuRef	1	174,996,845 - 175,006,377 (+)	NCBI		HuRef
CHM1_1	1	205,254,291 - 205,263,826 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	203,125,550 - 203,135,078 (+)	NCBI		T2T-CHM13v2.0

Snrpe
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	133,531,609 - 133,538,018 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	133,531,609 - 133,538,029 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	133,603,871 - 133,610,280 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	133,603,871 - 133,610,291 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	135,500,448 - 135,506,857 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	135,431,428 - 135,437,809 (-)	NCBI		MGSCv36	mm8
Celera	1	136,217,848 - 136,224,256 (-)	NCBI		Celera
Cytogenetic Map	1	E4	NCBI
cM Map	1	57.94	NCBI

Snrpe
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	47,596,324 - 47,609,390 (-)	NCBI		GRCr8
mRatBN7.2	13	45,050,986 - 45,057,231 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	120,416,603 - 120,417,059 (-)	Ensembl		mRatBN7.2 Ensembl
mRatBN7.2 Ensembl	13	45,050,986 - 45,057,310 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	47,660,319 - 47,666,563 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	48,948,392 - 48,954,636 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	46,206,438 - 46,212,656 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	50,252,707 - 50,258,951 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	129,371,556 - 129,371,973 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	55,306,370 - 55,312,614 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	46,522,340 - 46,528,589 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	13	45,383,253 - 45,389,497 (-)	NCBI		Celera
Cytogenetic Map	13	q13	NCBI

Snrpe
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	39,725,446 - 39,734,586 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955406	39,725,841 - 39,732,527 (+)	NCBI	ChiLan1.0	ChiLan1.0

SNRPE
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	45,504,989 - 45,513,980 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	45,469,792 - 45,478,724 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	179,466,263 - 179,474,779 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	183,755,378 - 183,764,937 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	183,755,392 - 183,764,937 (+)	Ensembl	panpan1.1		panPan2

SNRPE
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	515,808 - 521,536 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	515,860 - 521,535 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	611,256 - 616,960 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	511,670 - 517,385 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	511,699 - 518,346 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	508,129 - 513,844 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	898,470 - 904,186 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	1,112,955 - 1,118,678 (+)	NCBI		UU_Cfam_GSD_1.0

SNRPE
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	64,560,523 - 64,567,007 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	64,560,544 - 64,567,007 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	70,909,058 - 70,915,525 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SNRPE
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	25,474,620 - 25,483,427 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666055	26,249,119 - 26,257,943 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Snrpe
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624807	7,079,090 - 7,087,215 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624807	7,079,944 - 7,086,973 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005330313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000031893 ⟹ ENSSTOP00000031680

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936567	849,397 - 855,187 (-)	Ensembl

Ensembl Acc Id:

ENSSTOT00000032039 ⟹ ENSSTOP00000026414

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936567	852,567 - 854,837 (-)	Ensembl

Ensembl Acc Id:

ENSSTOT00000033892 ⟹ ENSSTOP00000030923

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936567	849,733 - 855,128 (-)	Ensembl

Ensembl Acc Id:

ENSSTOT00000036643 ⟹ ENSSTOP00000031806

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936567	852,489 - 855,128 (-)	Ensembl

RefSeq Acc Id:

XM_005330313 ⟹ XP_005330370

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	71,614,687 - 71,620,608 (-)	NCBI
SpeTri2.0	NW_004936567	849,300 - 855,214 (-)	NCBI

Sequence:

show sequence

CGTACACTTCCACTTCCGGTTCTCAATTCCGGAAGTCGCTCTCTGAGGTAACGTGCTGGTTCGTGTGGTCTTTGTGAGATTCCACCATGGCGTACCGTGGCCAGGGCCAGAAGGTCCAGAAGGTGATG
GTGCAGCCCATCAACCTCATCTTCAGATACTTGCAAAACAGATCCCGGATTCAGGTGTGGCTCTATGAGCAAGTGAATATGCGGATAGAGGGCTGTATTATTGGTTTTGATGAATACATGAACCTTGT
ATTAGATGATGCAGAAGAGATTCATTCTAAAACAAAGTCAAGAAAACAGCTGGGTCGGATCATGCTAAAAGGAGATAATATTACTCTGCTACAAAGTGTCTCCAACTAGAAATGATCAATGAAGTGGG
AAATTACAGAGAAAGCAACAATTTTTTTTTTTTTAATTTAGCTGCCCTTTGCCTGGAATATAGTTCTAAAGCATTAGTTCACATTGTTTTGATGACCTATGTTATTACCAGATGAAAATAAATGCTGT
GGGACTCTTTTTATTAAAAAAATTTACATTGTTTCTTCTTAATTCAGTGGTAAAGACCTTACAGTGCCATTATTAGCTGTTGGTATTTATTTTAAAGTTTCTAAATGGTTAGGAGGTGCTCTGGGCAT
TTGCTTTTTTCAGAGCATGAACCTATTTATTCTTAGTATTCTGACAGGCAGTGTTCCAATACTGGGTGGCAGAGAAAGTCAAGGTTTACAAAAATAAACCGGTATTGCACTAACCTA

hide sequence


Protein RefSeqs	XP_005330370	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000022341.1
	ENSSTOP00000026414.1
	ENSSTOP00000030923.1
	ENSSTOP00000031680.1
	ENSSTOP00000031806.1
GenBank Protein	KAG3258334	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005330370 ⟸ XM_005330313
- UniProtKB:	I3ND94 (UniProtKB/TrEMBL), A0A287DE72 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSVSN hide sequence

Ensembl Acc Id:

ENSSTOP00000031680 ⟸ ENSSTOT00000031893

Ensembl Acc Id:

ENSSTOP00000031806 ⟸ ENSSTOT00000036643

Ensembl Acc Id:

ENSSTOP00000026414 ⟸ ENSSTOT00000032039

Ensembl Acc Id:

ENSSTOP00000030923 ⟸ ENSSTOT00000033892

Protein Domains

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000021817	UniProtKB/TrEMBL
	ENSSTOG00000031197	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000020954.1	UniProtKB/TrEMBL
	ENSSTOT00000031893.1	UniProtKB/TrEMBL
	ENSSTOT00000032039.1	UniProtKB/TrEMBL
	ENSSTOT00000033892.1	UniProtKB/TrEMBL
	ENSSTOT00000036643.1	UniProtKB/TrEMBL
Gene3D-CATH	2.30.30.100	UniProtKB/TrEMBL
InterPro	IPR047575	UniProtKB/TrEMBL
	LSM_dom_euk/arc	UniProtKB/TrEMBL
	LSM_dom_sf	UniProtKB/TrEMBL
	snRNP-E	UniProtKB/TrEMBL
NCBI Gene	Snrpe	ENTREZGENE
PANTHER	PTHR11193	UniProtKB/TrEMBL
Pfam	LSM	UniProtKB/TrEMBL
PROSITE	PS52002	UniProtKB/TrEMBL
SMART	SM00651	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50182	UniProtKB/TrEMBL
UniProt	A0A287CYT3_ICTTR	UniProtKB/TrEMBL
	A0A287DBK7_ICTTR	UniProtKB/TrEMBL
	A0A287DE72	ENTREZGENE, UniProtKB/TrEMBL
	I3ND94	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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