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Gene: Rtl1 (retrotransposon Gag like 1) Ictidomys tridecemlineatus

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Symbol:

Rtl1

Name:

retrotransposon Gag like 1

RGD ID:

12467558

Description:

INVOLVED IN angiogenesis (ortholog); embryonic placenta development (ortholog); gene expression (ortholog); ASSOCIATED WITH Kagami-Ogata syndrome (ortholog); FOUND IN Z disc (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

retrotransposon-like 1; retrotransposon-like protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	5,411,964 - 5,434,210 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936604	4,648,928 - 4,655,418 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rtl1	Squirrel	Kagami-Ogata syndrome		ISO	RTL1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Paternal uniparental disomy 14	ClinVar	PMID:18176563

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rtl1	Squirrel	angiogenesis	acts_upstream_of_or_within	ISO	MGI:3776873	9068941	PMID:28111885	MGI	PMID:28111885
Rtl1	Squirrel	embryonic placenta development	acts_upstream_of_or_within	ISO	Rtl1 (Mus musculus)	9068941	PMID:26138477	MGI	PMID:26138477
Rtl1	Squirrel	embryonic placenta development	acts_upstream_of_or_within	ISO	MGI:3776873	9068941	PMID:28111885	MGI	PMID:28111885
Rtl1	Squirrel	gene expression	involved_in	ISO	MGI:3776873	9068941	PMID:32878913	MGI	PMID:32878913
Rtl1	Squirrel	labyrinthine layer development	acts_upstream_of_or_within	ISO	Rtl1 (Mus musculus)	9068941	PMID:26138477	MGI	PMID:26138477
Rtl1	Squirrel	labyrinthine layer development	acts_upstream_of_or_within	ISO	MGI:3776873	9068941	PMID:28111885	MGI	PMID:28111885
Rtl1	Squirrel	placenta development	involved_in	ISO	MGI:3776873	9068941	PMID:32878913	MGI	PMID:32878913
Rtl1	Squirrel	placenta development	involved_in	ISO	Rtl1 (Mus musculus)	9068941	PMID:32878913	MGI	PMID:32878913
Rtl1	Squirrel	skeletal muscle satellite cell proliferation	acts_upstream_of_or_within	ISO	MGI:3776873	9068941	PMID:32878913	MGI	PMID:32878913
Rtl1	Squirrel	skeletal muscle satellite cell proliferation	involved_in	ISO	MGI:3776873	9068941	PMID:32878913	MGI	PMID:32878913
Rtl1	Squirrel	skeletal muscle tissue development	involved_in	ISO	MGI:3776873	9068941	PMID:32878913	MGI	PMID:32878913
Rtl1	Squirrel	skeletal muscle tissue development	acts_upstream_of_or_within	ISO	MGI:3776873	9068941	PMID:32878913	MGI	PMID:32878913
Rtl1	Squirrel	skeletal muscle tissue development	involved_in	ISO	Rtl1 (Mus musculus)	9068941	PMID:32878913	MGI	PMID:32878913

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rtl1	Squirrel	Z disc	is_active_in	ISO	Rtl1 (Mus musculus)	9068941	PMID:32878913	MGI	PMID:32878913
Rtl1	Squirrel	Z disc	located_in	ISO	Rtl1 (Mus musculus)	9068941	PMID:32878913	MGI	PMID:32878913

Rtl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	5,411,964 - 5,434,210 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936604	4,648,928 - 4,655,418 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RTL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	100,879,753 - 100,903,722 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	100,879,753 - 100,903,722 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	101,346,090 - 101,370,059 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	100,416,802 - 100,420,878 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	14	81,400,811 - 81,405,006 (-)	NCBI		Celera
Cytogenetic Map	14	q32.2-q32.31	NCBI
HuRef	14	81,528,723 - 81,532,918 (-)	NCBI		HuRef
CHM1_1	14	101,285,181 - 101,289,375 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	95,115,189 - 95,139,155 (-)	NCBI		T2T-CHM13v2.0

Rtl1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	109,531,141 - 109,570,852 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	109,555,627 - 109,566,764 (-)	Ensembl		GRCm39 Ensembl
GRCm38	12	109,564,900 - 109,604,418 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	109,589,193 - 109,600,330 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	110,828,379 - 110,833,613 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	110,037,976 - 110,043,210 (-)	NCBI		MGSCv36	mm8
Celera	12	110,784,688 - 110,790,104 (-)	NCBI		Celera
Cytogenetic Map	12	F1	NCBI
cM Map	12	60.38	NCBI

Rtl1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	134,325,231 - 134,335,780 (-)	NCBI		GRCr8
mRatBN7.2	6	128,543,904 - 128,549,384 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	128,543,939 - 128,549,182 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	6	133,710,207 - 133,721,191 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	133,711,154 - 133,716,847 (-)	NCBI	Rnor6.0		rn6	Rnor6.0
Cytogenetic Map	6	q32	NCBI

Rtl1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955538	176,998 - 181,184 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955538	177,078 - 181,557 (-)	NCBI	ChiLan1.0	ChiLan1.0

RTL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	102,031,676 - 102,058,137 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	101,246,821 - 101,262,055 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	81,498,463 - 81,529,551 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	100,811,749 - 100,816,359 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	100,812,227 - 100,816,306 (-)	Ensembl	panpan1.1		panPan2

RTL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	69,102,081 - 69,126,209 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	69,102,644 - 69,106,687 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	68,619,982 - 68,646,853 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	69,385,732 - 69,412,597 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	69,386,134 - 69,390,177 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	69,047,435 - 69,074,288 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	69,113,293 - 69,140,165 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	69,511,471 - 69,534,272 (-)	NCBI		UU_Cfam_GSD_1.0

RTL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	121,707,122 - 121,711,414 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	121,706,955 - 121,720,472 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	132,097,039 - 132,100,222 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RTL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	78,840,599 - 78,865,282 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	78,842,440 - 78,846,519 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	65,999,877 - 66,028,159 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rtl1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624734	3,219,270 - 3,227,154 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005333921	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040275657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040275658	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040275659	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040275660	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010003700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_005333921 ⟹ XP_005333978

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	5,424,146 - 5,434,210 (+)	NCBI
SpeTri2.0	NW_004936604	4,648,928 - 4,655,418 (-)	NCBI

Sequence:

show sequence

AGATTTAATCTATTAGTTATAGATTTTTATCTTAAGAAAGTATATAATACGGTTTTAAAATCATCTTGCTAAGGAATTTGAATTTTAGCCAATCAAGGATTTTAAGGGAGAGACAAGCTGAGATTTTT
ATTTCTGATAGATGAGACGGCAGATGAATTACTTAGCCAAATTTTGTACTTCAATTAGAATTTTATGTCAGAGACTTGGAATTTTACAATAGTACAGACCTCAGAGGACTTTCATGAGGAGGAAATGA
GCTAATTTATGCAATTGCTACCTACATGTTTCTGTGATGATGATGACGGTGATTTTGTCCAATTTGTACACCATGCTAAAAAAATGTGAGGCCCTGCCTTGAGGAATGACATGTCAGAATTTCATATT
ATGTTAAGACCTTTAAATTTTATCCAGAGAATGGTTTTGGTGAGTTTACATGTCAGATATGTTTACACTAAAAGGTTTGGATTTAATATTGCAGACGGTAAATAAACAGTGAAAGGCTTTAATCAGAG
GGATTGCATGATCAAATTTAAGTGTCACGCTAACAAGGGCATACTTAATTTTGAGAAAGAGCAGATCTGAATTTTGTATCCTGTTGGAAAGTCTGGATTTTAGCCAGCAAGGATTTTTTACAAAAGGG
AATGCACTTTTTCTTTTTTTTAAATAGACCAGCCCAGTGGCCCTAAGAAGTAACCAAAAGTGTTAAATTTATAAAAAGCAATAACTTTATGACTTATCTATCAAATAATCAATGCTGAATTTTCTCTG
CCCCGGAGAAGCAATATGCAAATAACCCCAAACCAAGACAACTCTTTAAATTCCATTTCACCCCACTACAACTACCCATGCTAGACTTTCCAAAATTTCAGGACATTTAGGTTTCAAAGGTATCCCAT
GCTCTGCTCCCCACCCAAGGTCACATCTCTGACAGATACACTCCTAAGTAGGAGAAAATCGATCAGGGACAGAGAGAAGGGGCATCTGCCAGAACGAGGCCAGCCCCTCCTTGAGCAGAGGAGGGGAC
TTGGGAAGATGTGATTGGTGAGGCCTGCAAATATGTTTGCATGCATGGAATTGAGGCCAGATGTGGGAAGTTCCAGGAGCCCAGCAGACCCAGAAGGCAATCCTGAGACAGTGCAGATCTTAGGAGGG
CGGGGAGGTTACCTGAAGATCTCCTTCACAGCTCAGAGCTGGAGAGAACATGGCATTGGAAGGAGATCAAATCGAGAAAGAGAAATCCCCAAAAAGTGTGGCCTAGGATCAGGTAACCGAGGTGGAGT
TCTCCGACACATAGTAGGCCTTTTAGAAACATGTATGGTGGGGGGAGGATGGAAAATAAAAGCCAGAACCCAGCCTTCGATTTCTCCCCTCCGTATTTTTTATTTTAAACCTGGAGGAGGAAATAAGA
GCTATTCTGGGCTGCTGACCCAGCTGGCGGGAGAGTGGCCAAGTGCCCGTTTTCTCCTCTTCCCCCAAACTGGAGCCACAGCGGGCGTCTCTGCCGGGGTTTCCCGCCTCCACAACCACACGGGCTGG
GCTTGCTCCAGAGCCCCAAGCCTGCCAGGGGTGGCTTGGAATGGCACTGAGATGTGACCTCTGTGACTCGGGTGATCAAAGACGGGGAGGAAGACTGACCAGGCACATGTGCCAGGGAGTAATGGGGC
AGCCCTGTACCCTGCCAGGTGCCTGCCTGCTTGCCACAGCAGCGGCTCTGGGCTAGTTGCTCCACAAAATTTATGGGCTGTGAATTTCTCACACCCATGGAGGAAGTAGGCGGGCCAAGCAGGCAGAC
TCCGCCTGGGAGGCAGGTCAGGGTTGACGGAGTCTCTCCCTGGGGGTGCCCCAAGTGACCAGCCAAGGAGGCTGGCTGGGACACAGGAAGGTTTTCCCTGGCTCTTCTGTGTTCTGATTGCTTGGGCA
TCTGAACTGTGCTTGAGAACCTGACCCTGACCTCTTGAGACCCTAAACTGCTGCCTTTACTCCCCACTCCGTCCCCTCTGTTCCTAGGTTCTGATCTCTGCAGTCCCAGTCGCTGACGGGAGGCGTCC
CAACCTTACCGATCTTCAGAAAACACTCCTTTCCAACCGACGAAATGATAGAACCCTCTGAAGACTCATTTGAGACGATGATGGAGCGTAAGAATCCATCATCAAAACAAATGGAGTCCTCCGAGGGC
TCGTCCAACACCACCATGGAGACACCGGGCAGCGGAGCGCAGGCGGCGGCGGCCGGGCCATCCAGTGGCCCAGCCCAGGAAAGAGAGGAGCCACCCAGTGGCTCACTCCAGGAAATGAAAGAGCTGCC
CATTGATCTACTCCAAGACATGGAGGAGCCATCCAGTGGCCCACATAAGGAAATAGAGGATCCACCCAATGACCTACTCCAAGACCTGGAGGAGTCATGCTATGGTTCACACCAGGCAGTGGGGGATC
CACTCAAGGAAACATCTGAGAGAATGAGAGAAGCGTCAGTCAACCCATCCGGAGCCCAGGGAAAGCGAGAGGCAGGCAACACTGACCTGAAGGAGTCAGCTAAGAAGGAGAATCCCGAAGAGGAAAAC
CAGACCGAGAGCTCTCCCGCAGAAATCATGACCATGATGCGGTCCATCATCTCACTGTACTTCCGAATGCAAGACCTCAAAGAACAACAGAGAGTAGCAGAGGAGATCCTGGTACGGGGGATCAATGC
CGGCCGCCTTCCCGCCCCAAAGCGCTTCTCTGGCGATCGCAGAGAATACCATGAGTTCATCGTGCTCTGCCAACTGATCTTACAAAGCTACCCGAGAATGTTCTACAGCGACCGCCTGCGAGTGAAGT
ATGTCATCTGCCACCTCTCTGGCTTAGCCTTGGAGTGGGCCAAAGCTCTGCTGCAGCAGAACAGCCCCCTGATGGGAGACTTCCCCGCCTTCCTGGAGGCCATGTCAGAAGTGTTCGAGTACCGGCAG
ACACTACGTGTGGCAGAAGAGGCCATGTTCAACATCAGGCAGGGCAATCGCTGTGCCACCGACTACATCAATGAGTTCCAGAGCCTGGTACCTACCTTGGGCTGGCCAGACGAAGTCCTGCAGGCCCA
CCTGTGCCAGGGGCTCAACGAGGACATCAGGCATTATCTCTTCCGCGTCCCACAACCGGATTCCCTGGACAGCCTGATCGTGGTCATCCTGCAAATAGAAGACAAGCTGGCAGAGAGACGGGCCATGC
TCAGGCTGCCCCCAGAGGCCCGCCCACGGAACCTGACCTGGATCGACTCACCTGCTCCAGAGAAGTGGATGGTCAGCAGCTGGCTGCCCAGCGAATTCCATCCGGCCATCAATCGCGCCCATCTCTTC
CTGCTGCTCTTGGTCAGAGTGAACCCCTACCACAGTGTGGCGGTCCAGGCCCTGGTGGATTCCGGAGCCGAAGGCAACTTCATGGATGAGAAGTTTGCCCAAGAGCACTACGTGGAGCTGTACGAGAA
GCCCTACCCACAGTCAATCCAGACCGTTGACGGCTCGCTGATCGGCAATGAGCCCATCTGGCTGTACACCGAACCCCTGGTGTGCATTCACCAGAACCACCAGGAGTCCATCGAATTCGACATCGTAC
CTTCACCTAACTTCTCCGTGGTATTGGGCATCAACTGGCTCCGAATCCACGCCCCAGAAGTCGACTGGATCAAAGGCCGCTGCACCTTCCACTCTCCCTACTGCCTGAAGAACTGCTTCCGCCCACCC
CCGCCATGCATCGCACTGGAGAGACACAGCATAAGCCTACTGCCCGGATTGCCACACCCATACTCAGACCTGGCCGACGTGTTTAACCCGAAGGAAGCAGATGATGAGACTTCCGACCAGCCAAGCTC
AGACGGATCCGATGATCTTTCTGAATCAGAGCCCTCTGAGCTTCAGCAGGCTGGAGACAGTGATCACAGCGAGACCTTTTACGAATGTCCCTCCACCGCGCCTTGGGAACCTGTGGGTGCCAGGATGC
AAGAAGAAGCCAGGCAGCAAGAGGAATTCTGGGAGCTGCAGGACATGCTGACCGACAGACAGGACTACATACAGATGATTCCGGAACTGTTTGACCAGTTACACGGAGCCGCGTGGTTCACAAAACTA
GAGCTGCGTGGGACCATCGTGGAGGGAAGCATGAGCGCCCACCGAACAGAGGAGACATGGAAAGCAGCATTCGGCTTGGAGCTTCAAGACATGAAGAGCTACCAGCCCTTCGCGCTGTCCCCGGACCC
TATCATACCACAGAGCGTGATCCACTTTATCCTGAAGGACATGCTAGGCTTCTTTGTGCTTTCCTACGGCCAGGAAGTCCTCGTCTACTCAATGTGCCAGGAGGAGCACCTCCAGCACGTCCGCCAAG
TCCTCGTCCGCTTCCGGCACCACAACGTCTACTGCTCACTAGACAAAAGCCAGTTCCACCGGCAGACGGCAGAAATCCTGGGCTTCGTCGTGTCCCCCAAAGGGGTGAAACTGAACAAGAACATCATG
AACATCATCACGGGGCACCCGACCCCAGTCAATAAGAAGTCCCTGCGCAGCCTGATCGAGTTCGTGTTCCCCTACCGCCACTTTGTGGAGCGCTTTGCCATCATCGCAGAGCCCCTGGTGCGGCAGGT
GCTGAGCACCCAGCCTTTCTACTGGGGAGAGGAGGAGCAGGAGGCCTTCGAGTGCCTGAAGAGGGCTTTCCGCAAGGCGCCCATGCTCTACCACCCCAGGCCTCAGAACCAGTTCTACTTGGAAACGG
GCATCTACAGGACGGCCCTGTACACCTCCCTGATCCAAATTGACGACCAAACTGGCAAGAGAGTCACCTGCGCTTTCTACTCCCGAAACCTCTCCCCCATCGAGGTCGAGTACCCTCTGGTGGAGATG
AGAGTCCTTCCAATCCGGGCTGCCTTCATGGTGTGGTGCCGCTACCTGGAGAACACCGAGGAGCCCATCATGATCCTTCTCAACACGGAGGATCTAGCCTCTCTGAATAATGACAGGCTCACCGTACT
TCTCCCCGGGCATTGGGTCTTCTTCTTCTCTCACTTCAACTTTGACGTCATGGAGCTGCCTGAACAAGACGGGGGCCGCCCCCTGACACCTGTGAGAAACCGCGGCCGCCAAGGGCTGCGCGGCAGGG
CCACACGGCCCGTCCTGCTCTATGCCACGAGAGGATCCCCCAGGGATCAGACCATCGAATCCGAGGAGGAGGAGAACGGACACGAGCCAGACCAAGACGAATTCAACGAGCAGGCCCTGCAGCAGGAG
CTGCTGGCCATGATTCCCATCGACCAGATCCTCAACAGCTTCCTGGCCCACTTCAGCATGGCCCAGATCAGGGCCGTCATCCTGCACTTCTTCCGCGGCCTCCTCTACTGGAAGAACCTCCTCGCCAT
GGCAGCCGTCCTAGTGCTCATGAGGGTGAGACAGTGCCCTGCCCTGCTGCCAGCCCCCACCATGGCGGTGGCTCGGCCCCAACCTCGGCGCTCCCTGCGCCTCATCCTGGACTCGACCCTCATTGCCA
GCAGCAGCATGGCCACGGCCATCGCTCAGCTGCTCACTCAGATGCCCCCTCTGGTGGGCGCCAACACCATGCCGGCCCAGGAGATGGCCGAGCTGTTCCTGGGCCCCCGCCGCTGGCAGAGAAATGCC
CTGCACCCCCAGACCACCGGGGGCCTGAGATTCACCCCGGGGTTCTGGCTGACACTCTGTGAGTTCTTTGGTGTCCGCGTCACCCCACCTGAGGGTGGCCGCCCTGCCCCACGCCAGAACCGCTACTT
GGAGCTGCACGTCGTTGGCGATGAGGATGTCGTCTTGCGAGAAGCCCTGCAAGACGACCTGCAACGTTACCGTCAGTGTGGCCTGCATGACGGCCTGCAAGACACCTCGCAGGACGCGCAGGACAACG
ACGCGCAGGAAGCCCTGCCCACACAGACGGCCGGTGCCCTCACTCTCCGCCCACGCAACCTGATGGACCCTGAGGTCCTGGACTTCCTCCAAAATCGCCTGCTCCACGTGCGAGGTGCCGATGGGAGG
CTCACGCTGCTCAGCAGGGAGCAGGTGGCCCAGGCCCTGACCCGATTCCTGAGCATGACCTACAGGCAGGCCCCGCCTGCCCCAGCCGCTGGGCATCAGCCCAGGGAACCAGCAAGCCTGGAAGAACT
ACCAGACCTCGAGGACGCTGACCTCGACTGAAGACACCTCCTCTCCAGCCAGGAGGCCCCTCTCCTCCAACCAGCACCCTGCAGTCTCCACCATGCTCCCTGCGCCTCAGCCAGCTTCGCTCAGACCC
AGCGCCCCTCCTGCCACTCCTGACCCAAGGGGAACCCACTTGTGAAGGGCAAAATTCCTTCGACTCATCAACCAGCAACGCCATCTGTGCTAAAGGACTATCGAGTCATCAGTGACCCAGAGTCAGTT
CAGGGCTACACAACCCCGTCCAAATTCTCCAGGTCCCAGGCCACAACTGGGACTGACATCCACGAGAGGAGAGGGCAGTGACGAGCAGGAA

hide sequence

RefSeq Acc Id:

XM_040275657 ⟹ XP_040131591

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	5,412,436 - 5,434,210 (+)	NCBI

RefSeq Acc Id:

XM_040275658 ⟹ XP_040131592

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	5,411,964 - 5,434,210 (+)	NCBI

RefSeq Acc Id:

XM_040275659 ⟹ XP_040131593

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	5,415,270 - 5,434,210 (+)	NCBI

RefSeq Acc Id:

XM_040275660 ⟹ XP_040131594

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	5,412,436 - 5,434,210 (+)	NCBI


Protein RefSeqs	XP_005333978	(Get FASTA)	NCBI Sequence Viewer
	XP_040131591	(Get FASTA)	NCBI Sequence Viewer
	XP_040131592	(Get FASTA)	NCBI Sequence Viewer
	XP_040131593	(Get FASTA)	NCBI Sequence Viewer
	XP_040131594	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	KAG3260358	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005333978 ⟸ XM_005333921

- Sequence:

show sequence

MIEPSEDSFETMMERKNPSSKQMESSEGSSNTTMETPGSGAQAAAAGPSSGPAQEREEPPSGSLQEMKELPIDLLQDMEEPSSGPHKEIEDPPNDLLQDLEESCYGSHQAVGDPLKETSERMREASVN
PSGAQGKREAGNTDLKESAKKENPEEENQTESSPAEIMTMMRSIISLYFRMQDLKEQQRVAEEILVRGINAGRLPAPKRFSGDRREYHEFIVLCQLILQSYPRMFYSDRLRVKYVICHLSGLALEWAK
ALLQQNSPLMGDFPAFLEAMSEVFEYRQTLRVAEEAMFNIRQGNRCATDYINEFQSLVPTLGWPDEVLQAHLCQGLNEDIRHYLFRVPQPDSLDSLIVVILQIEDKLAERRAMLRLPPEARPRNLTWI
DSPAPEKWMVSSWLPSEFHPAINRAHLFLLLLVRVNPYHSVAVQALVDSGAEGNFMDEKFAQEHYVELYEKPYPQSIQTVDGSLIGNEPIWLYTEPLVCIHQNHQESIEFDIVPSPNFSVVLGINWLR
IHAPEVDWIKGRCTFHSPYCLKNCFRPPPPCIALERHSISLLPGLPHPYSDLADVFNPKEADDETSDQPSSDGSDDLSESEPSELQQAGDSDHSETFYECPSTAPWEPVGARMQEEARQQEEFWELQD
MLTDRQDYIQMIPELFDQLHGAAWFTKLELRGTIVEGSMSAHRTEETWKAAFGLELQDMKSYQPFALSPDPIIPQSVIHFILKDMLGFFVLSYGQEVLVYSMCQEEHLQHVRQVLVRFRHHNVYCSLD
KSQFHRQTAEILGFVVSPKGVKLNKNIMNIITGHPTPVNKKSLRSLIEFVFPYRHFVERFAIIAEPLVRQVLSTQPFYWGEEEQEAFECLKRAFRKAPMLYHPRPQNQFYLETGIYRTALYTSLIQID
DQTGKRVTCAFYSRNLSPIEVEYPLVEMRVLPIRAAFMVWCRYLENTEEPIMILLNTEDLASLNNDRLTVLLPGHWVFFFSHFNFDVMELPEQDGGRPLTPVRNRGRQGLRGRATRPVLLYATRGSPR
DQTIESEEEENGHEPDQDEFNEQALQQELLAMIPIDQILNSFLAHFSMAQIRAVILHFFRGLLYWKNLLAMAAVLVLMRVRQCPALLPAPTMAVARPQPRRSLRLILDSTLIASSSMATAIAQLLTQM
PPLVGANTMPAQEMAELFLGPRRWQRNALHPQTTGGLRFTPGFWLTLCEFFGVRVTPPEGGRPAPRQNRYLELHVVGDEDVVLREALQDDLQRYRQCGLHDGLQDTSQDAQDNDAQEALPTQTAGALT
LRPRNLMDPEVLDFLQNRLLHVRGADGRLTLLSREQVAQALTRFLSMTYRQAPPAPAAGHQPREPASLEELPDLEDADLD

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RefSeq Acc Id:

XP_040131592 ⟸ XM_040275658

RefSeq Acc Id:

XP_040131591 ⟸ XM_040275657

RefSeq Acc Id:

XP_040131594 ⟸ XM_040275660

RefSeq Acc Id:

XP_040131593 ⟸ XM_040275659

Database	Acc Id	Source(s)
NCBI Gene	Rtl1	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-04-18	Rtl1	retrotransposon Gag like 1		retrotransposon-like 1	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar