LOC101971618 (ubiquinol-cytochrome-c reductase complex assembly factor 1) - Rat Genome Database

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Gene: LOC101971618 (ubiquinol-cytochrome-c reductase complex assembly factor 1) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101971618 (Ensembl: UQCC1)
Name: ubiquinol-cytochrome-c reductase complex assembly factor 1
RGD ID: 12462619
Description: INVOLVED IN mitochondrial respiratory chain complex III assembly (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasmic vesicle (inferred); mitochondrial inner membrane (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640173,295,851 - 173,390,648 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365615,358,779 - 5,450,957 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365615,358,954 - 5,453,583 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC101971618
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640173,295,851 - 173,390,648 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365615,358,779 - 5,450,957 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365615,358,954 - 5,453,583 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UQCC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382035,302,578 - 35,411,973 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2035,302,566 - 35,412,031 (-)EnsemblGRCh38hg38GRCh38
GRCh372033,890,381 - 33,999,776 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362033,353,795 - 33,463,247 (-)NCBINCBI36Build 36hg18NCBI36
Build 342033,353,794 - 33,463,247NCBI
Celera2030,638,977 - 30,748,569 (-)NCBICelera
Cytogenetic Map20q11.22NCBI
HuRef2030,667,798 - 30,777,427 (-)NCBIHuRef
CHM1_12033,791,448 - 33,901,370 (-)NCBICHM1_1
T2T-CHM13v2.02037,023,439 - 37,132,841 (-)NCBIT2T-CHM13v2.0
Uqcc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392155,688,806 - 155,772,230 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2155,688,814 - 155,772,230 (-)EnsemblGRCm39 Ensembl
GRCm382155,846,886 - 155,930,310 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2155,846,894 - 155,930,310 (-)EnsemblGRCm38mm10GRCm38
MGSCv372155,672,622 - 155,756,046 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362155,538,348 - 155,621,489 (-)NCBIMGSCv36mm8
Celera2161,779,639 - 161,863,573 (-)NCBICelera
Cytogenetic Map2H1NCBI
cM Map277.26NCBI
Uqcc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83164,813,398 - 164,905,892 (-)NCBIGRCr8
mRatBN7.23144,353,276 - 144,445,810 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3144,353,287 - 144,445,711 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3148,219,693 - 148,311,155 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03156,836,953 - 156,928,424 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03154,576,474 - 154,667,954 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03151,384,965 - 151,474,112 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3151,384,954 - 151,474,135 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03157,748,573 - 157,840,990 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera3143,077,638 - 143,168,240 (-)NCBICelera
Cytogenetic Map3q42NCBI
LOC102012974
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542226,009,078 - 26,096,300 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542226,009,078 - 26,096,300 (+)NCBIChiLan1.0ChiLan1.0
LOC100983071
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22141,037,093 - 41,146,181 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12041,030,197 - 41,138,162 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02031,632,012 - 31,739,994 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12032,754,820 - 32,861,330 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2032,754,820 - 32,861,330 (-)Ensemblpanpan1.1panPan2
UQCC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12424,285,147 - 24,381,819 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2424,286,320 - 24,381,699 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2423,931,045 - 24,027,512 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02424,977,348 - 25,074,111 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2424,975,855 - 25,074,003 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12424,264,179 - 24,360,878 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02424,359,193 - 24,455,898 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02424,798,305 - 24,894,928 (-)NCBIUU_Cfam_GSD_1.0
UQCC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1738,658,579 - 38,775,328 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11738,661,544 - 38,775,354 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21744,042,305 - 44,072,594 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UQCC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1256,209,851 - 56,317,572 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl256,209,485 - 56,317,620 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660872,360,513 - 2,468,739 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101697349
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248423,977,737 - 4,084,558 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248423,978,051 - 4,085,983 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000013110   ⟹   ENSSTOP00000011751
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365615,358,779 - 5,450,957 (+)Ensembl
RefSeq Acc Id: XM_005329890   ⟹   XP_005329947
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640173,295,851 - 173,390,648 (-)NCBI
SpeTri2.0NW_0049365615,358,954 - 5,453,583 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040274176   ⟹   XP_040130110
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640173,295,851 - 173,390,648 (-)NCBI
RefSeq Acc Id: XM_040274177   ⟹   XP_040130111
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640173,295,851 - 173,390,546 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005329947 (Get FASTA)   NCBI Sequence Viewer  
  XP_040130110 (Get FASTA)   NCBI Sequence Viewer  
  XP_040130111 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000011751.3
GenBank Protein KAG3263144 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005329947   ⟸   XM_005329890
- Peptide Label: isoform X1
- UniProtKB: I3MKE5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040130110   ⟸   XM_040274176
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040130111   ⟸   XM_040274177
- Peptide Label: isoform X3
RefSeq Acc Id: ENSSTOP00000011751   ⟸   ENSSTOT00000013110
Protein Domains
Ubiquinol-cytochrome c chaperone


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000013116 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000013110.3 UniProtKB/TrEMBL
InterPro Ubiq_cyt_c_chap/UPF0174 UniProtKB/TrEMBL
  Ubiqinol_cyt_c_chaperone_CPB3 UniProtKB/TrEMBL
NCBI Gene LOC101971618 ENTREZGENE
PANTHER PTHR12184 UniProtKB/TrEMBL
  UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX ASSEMBLY FACTOR 1 UniProtKB/TrEMBL
Pfam Ubiq_cyt_C_chap UniProtKB/TrEMBL
UniProt I3MKE5 ENTREZGENE, UniProtKB/TrEMBL