Uqcc1 (ubiquinol-cytochrome c reductase complex assembly factor 1) - Rat Genome Database

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Gene: Uqcc1 (ubiquinol-cytochrome c reductase complex assembly factor 1) Rattus norvegicus
Analyze
Symbol: Uqcc1
Name: ubiquinol-cytochrome c reductase complex assembly factor 1
RGD ID: 1585681
Description: Predicted to be involved in mitochondrial respiratory chain complex III assembly. Predicted to be located in cytoplasmic vesicle and mitochondrial inner membrane. Predicted to be active in mitochondrion. Orthologous to human UQCC1 (ubiquinol-cytochrome c reductase complex assembly factor 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; aconitine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC683512; similar to Basic FGF-repressed Zic-binding protein (mbFZb); ubiquinol-cytochrome c reductase complex chaperone; Uqcc
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Uqcc1-ps1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23144,353,276 - 144,445,810 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3144,353,287 - 144,445,711 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3148,219,693 - 148,311,155 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.03156,836,953 - 156,928,424 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.03154,576,474 - 154,667,954 (-)NCBIRnor_WKY
Rnor_6.03151,384,965 - 151,474,112 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3151,384,954 - 151,474,135 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03157,748,573 - 157,840,990 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera3143,077,638 - 143,168,240 (-)NCBICelera
Cytogenetic Map3q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11118897   PMID:12477932   PMID:18614015   PMID:24385928  


Genomics

Comparative Map Data
Uqcc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23144,353,276 - 144,445,810 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3144,353,287 - 144,445,711 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3148,219,693 - 148,311,155 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.03156,836,953 - 156,928,424 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.03154,576,474 - 154,667,954 (-)NCBIRnor_WKY
Rnor_6.03151,384,965 - 151,474,112 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3151,384,954 - 151,474,135 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03157,748,573 - 157,840,990 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera3143,077,638 - 143,168,240 (-)NCBICelera
Cytogenetic Map3q42NCBI
UQCC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382035,302,578 - 35,411,973 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2035,302,566 - 35,412,031 (-)EnsemblGRCh38hg38GRCh38
GRCh372033,890,381 - 33,999,776 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362033,353,795 - 33,463,247 (-)NCBINCBI36Build 36hg18NCBI36
Build 342033,353,794 - 33,463,247NCBI
Celera2030,638,977 - 30,748,569 (-)NCBICelera
Cytogenetic Map20q11.22NCBI
HuRef2030,667,798 - 30,777,427 (-)NCBIHuRef
CHM1_12033,791,448 - 33,901,370 (-)NCBICHM1_1
T2T-CHM13v2.02037,023,439 - 37,132,841 (-)NCBIT2T-CHM13v2.0
Uqcc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392155,688,806 - 155,772,230 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2155,688,814 - 155,772,230 (-)EnsemblGRCm39 Ensembl
GRCm382155,846,886 - 155,930,310 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2155,846,894 - 155,930,310 (-)EnsemblGRCm38mm10GRCm38
MGSCv372155,672,622 - 155,756,046 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362155,538,348 - 155,621,489 (-)NCBIMGSCv36mm8
Celera2161,779,639 - 161,863,573 (-)NCBICelera
Cytogenetic Map2H1NCBI
LOC102012974
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542226,009,078 - 26,096,300 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542226,009,078 - 26,096,300 (+)NCBIChiLan1.0ChiLan1.0
LOC100983071
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12032,754,820 - 32,861,330 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2032,754,820 - 32,861,330 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02031,632,012 - 31,739,994 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
UQCC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12424,285,147 - 24,381,819 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2424,286,320 - 24,381,699 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2423,931,045 - 24,027,512 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02424,977,348 - 25,074,111 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2424,975,855 - 25,074,003 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12424,264,179 - 24,360,878 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02424,359,193 - 24,455,898 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02424,798,305 - 24,894,928 (-)NCBIUU_Cfam_GSD_1.0
LOC101971618
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640173,295,851 - 173,390,648 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365615,358,954 - 5,453,583 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UQCC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1738,658,579 - 38,775,328 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11738,661,544 - 38,775,354 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21744,042,305 - 44,072,594 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UQCC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1256,209,851 - 56,317,572 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl256,209,485 - 56,317,620 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660872,360,513 - 2,468,739 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101697349
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248423,977,737 - 4,084,558 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248423,978,051 - 4,085,983 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
AU049262  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23144,425,088 - 144,425,200 (+)MAPPERmRatBN7.2
Rnor_6.03151,454,105 - 151,454,216NCBIRnor6.0
Rnor_5.03157,820,735 - 157,820,846UniSTSRnor5.0
Celera3143,148,014 - 143,148,125UniSTS
RH137298  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23144,354,435 - 144,354,617 (+)MAPPERmRatBN7.2
Rnor_6.03151,386,125 - 151,386,306NCBIRnor6.0
Rnor_5.03157,749,733 - 157,749,914UniSTSRnor5.0
Celera3143,077,773 - 143,077,954UniSTS
UniSTS:234578  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23144,354,686 - 144,354,788 (+)MAPPERmRatBN7.2
Rnor_6.03151,386,376 - 151,386,477NCBIRnor6.0
Rnor_5.03157,749,984 - 157,750,085UniSTSRnor5.0
Celera3143,078,024 - 143,078,126UniSTS
REN57263  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23144,370,195 - 144,370,465 (+)MAPPERmRatBN7.2
Rnor_6.03151,401,882 - 151,402,151NCBIRnor6.0
Rnor_5.03157,765,490 - 157,765,759UniSTSRnor5.0
Celera3143,093,507 - 143,093,776UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1581568Rf53Renal function QTL 53total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1581546Pur13Proteinuria QTL 132.930.0335total urine protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3107693393152693393Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3118839124163839124Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3121056165145956249Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3121056165157309487Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3130193298161695983Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
5686842Rf59Renal function QTL 59urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)3140069424146976080Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141339013162184794Rat
61335Bp20Blood pressure QTL 203arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141339236155617360Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:338
Count of miRNA genes:218
Interacting mature miRNAs:245
Transcripts:ENSRNOT00000072679
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 37 11 8
Low 4
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000072679   ⟹   ENSRNOP00000066461
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3144,353,287 - 144,445,711 (-)Ensembl
Rnor_6.0 Ensembl3151,384,954 - 151,474,135 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000101088   ⟹   ENSRNOP00000093473
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3144,357,419 - 144,437,647 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000105431   ⟹   ENSRNOP00000093964
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3144,353,287 - 144,445,711 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000108633   ⟹   ENSRNOP00000076446
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3144,353,287 - 144,445,711 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000108696   ⟹   ENSRNOP00000077620
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3144,353,287 - 144,445,711 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000114179   ⟹   ENSRNOP00000080991
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3144,353,291 - 144,444,823 (-)Ensembl
RefSeq Acc Id: NM_001109446   ⟹   NP_001102916
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23144,354,301 - 144,445,692 (-)NCBI
Rnor_6.03151,385,990 - 151,474,112 (-)NCBI
Rnor_5.03157,748,573 - 157,840,990 (-)NCBI
Celera3143,077,638 - 143,168,240 (-)RGD
Sequence:
RefSeq Acc Id: XM_006235361   ⟹   XP_006235423
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23144,353,276 - 144,445,587 (-)NCBI
Rnor_6.03151,384,965 - 151,473,992 (-)NCBI
Rnor_5.03157,748,573 - 157,840,990 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039105859   ⟹   XP_038961787
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23144,368,160 - 144,445,810 (-)NCBI
RefSeq Acc Id: XM_039105861   ⟹   XP_038961789
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23144,353,276 - 144,445,718 (-)NCBI
RefSeq Acc Id: XM_039105862   ⟹   XP_038961790
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23144,353,276 - 144,445,703 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001102916   ⟸   NM_001109446
- UniProtKB: Q32Q54 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006235423   ⟸   XM_006235361
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000066461   ⟸   ENSRNOT00000072679
RefSeq Acc Id: XP_038961789   ⟸   XM_039105861
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038961790   ⟸   XM_039105862
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038961787   ⟸   XM_039105859
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000077620   ⟸   ENSRNOT00000108696
RefSeq Acc Id: ENSRNOP00000093964   ⟸   ENSRNOT00000105431
RefSeq Acc Id: ENSRNOP00000093473   ⟸   ENSRNOT00000101088
RefSeq Acc Id: ENSRNOP00000076446   ⟸   ENSRNOT00000108633
RefSeq Acc Id: ENSRNOP00000080991   ⟸   ENSRNOT00000114179
Protein Domains
Ubiq_cyt_C_chap

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q32Q54-F1-model_v2 AlphaFold Q32Q54 1-299 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692591
Promoter ID:EPDNEW_R3116
Type:single initiation site
Name:Uqcc1_1
Description:ubiquinol-cytochrome c reductase complex assembly factor 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03151,474,117 - 151,474,177EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1585681 AgrOrtholog
BioCyc Gene G2FUF-47114 BioCyc
Ensembl Genes ENSRNOG00000048309 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000066461 ENTREZGENE
  ENSRNOP00000066461.1 UniProtKB/TrEMBL
  ENSRNOP00000076446.1 UniProtKB/TrEMBL
  ENSRNOP00000077620 ENTREZGENE
  ENSRNOP00000077620.1 UniProtKB/TrEMBL
  ENSRNOP00000080991 ENTREZGENE
  ENSRNOP00000080991.1 UniProtKB/TrEMBL
  ENSRNOP00000093473.1 UniProtKB/TrEMBL
  ENSRNOP00000093964.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000072679 ENTREZGENE
  ENSRNOT00000072679.3 UniProtKB/TrEMBL
  ENSRNOT00000101088.1 UniProtKB/TrEMBL
  ENSRNOT00000105431.1 UniProtKB/TrEMBL
  ENSRNOT00000108633.1 UniProtKB/TrEMBL
  ENSRNOT00000108696 ENTREZGENE
  ENSRNOT00000108696.1 UniProtKB/TrEMBL
  ENSRNOT00000114179 ENTREZGENE
  ENSRNOT00000114179.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7321008 IMAGE-MGC_LOAD
InterPro Ubiq_cyt_c_chap/UPF0174 UniProtKB/TrEMBL
  Ubiqinol_cyt_c_chaperone_CPB3 UniProtKB/TrEMBL
KEGG Report rno:683512 UniProtKB/TrEMBL
MGC_CLONE MGC:125051 IMAGE-MGC_LOAD
NCBI Gene 683512 ENTREZGENE
PANTHER Ubiq_cyt_C_chap UniProtKB/TrEMBL
Pfam Ubiq_cyt_C_chap UniProtKB/TrEMBL
PhenoGen Uqcc1 PhenoGen
UniProt A0A8I5XZY9_RAT UniProtKB/TrEMBL
  A0A8I5ZKC3_RAT UniProtKB/TrEMBL
  A0A8I6ALE3_RAT UniProtKB/TrEMBL
  A0A8I6AMU7_RAT UniProtKB/TrEMBL
  A0A8I6G7D8_RAT UniProtKB/TrEMBL
  Q32Q54 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-11 Uqcc1  ubiquinol-cytochrome c reductase complex assembly factor 1  Uqcc  ubiquinol-cytochrome c reductase complex chaperone  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-11-12 Uqcc  ubiquinol-cytochrome c reductase complex chaperone  LOC683512  similar to Basic FGF-repressed Zic-binding protein (mbFZb)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC683512  similar to Basic FGF-repressed Zic-binding protein (mbFZb)      Symbol and Name status set to provisional 70820 PROVISIONAL