LOC100983071 (ubiquinol-cytochrome c reductase complex assembly factor 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: LOC100983071 (ubiquinol-cytochrome c reductase complex assembly factor 1) Pan paniscus
Analyze
Symbol: LOC100983071 (Ensembl: UQCC1)
Name: ubiquinol-cytochrome c reductase complex assembly factor 1
RGD ID: 11866614
Description: INVOLVED IN mitochondrial respiratory chain complex III assembly (inferred); ASSOCIATED WITH glutathione synthetase deficiency (ortholog); FOUND IN cytoplasmic vesicle (inferred); mitochondrial inner membrane (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog; ubiquinol-cytochrome-c reductase complex assembly factor 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22141,037,093 - 41,146,181 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12041,030,197 - 41,138,162 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02031,632,012 - 31,739,994 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12032,754,820 - 32,861,330 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2032,754,820 - 32,861,330 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC100983071
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22141,037,093 - 41,146,181 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12041,030,197 - 41,138,162 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02031,632,012 - 31,739,994 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12032,754,820 - 32,861,330 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2032,754,820 - 32,861,330 (-)Ensemblpanpan1.1panPan2
UQCC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382035,302,578 - 35,411,973 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2035,302,566 - 35,412,031 (-)EnsemblGRCh38hg38GRCh38
GRCh372033,890,381 - 33,999,776 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362033,353,795 - 33,463,247 (-)NCBINCBI36Build 36hg18NCBI36
Build 342033,353,794 - 33,463,247NCBI
Celera2030,638,977 - 30,748,569 (-)NCBICelera
Cytogenetic Map20q11.22NCBI
HuRef2030,667,798 - 30,777,427 (-)NCBIHuRef
CHM1_12033,791,448 - 33,901,370 (-)NCBICHM1_1
T2T-CHM13v2.02037,023,439 - 37,132,841 (-)NCBIT2T-CHM13v2.0
Uqcc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392155,688,806 - 155,772,230 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2155,688,814 - 155,772,230 (-)EnsemblGRCm39 Ensembl
GRCm382155,846,886 - 155,930,310 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2155,846,894 - 155,930,310 (-)EnsemblGRCm38mm10GRCm38
MGSCv372155,672,622 - 155,756,046 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362155,538,348 - 155,621,489 (-)NCBIMGSCv36mm8
Celera2161,779,639 - 161,863,573 (-)NCBICelera
Cytogenetic Map2H1NCBI
cM Map277.26NCBI
Uqcc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83164,813,398 - 164,905,892 (-)NCBIGRCr8
mRatBN7.23144,353,276 - 144,445,810 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3144,353,287 - 144,445,711 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3148,219,693 - 148,311,155 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03156,836,953 - 156,928,424 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03154,576,474 - 154,667,954 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03151,384,965 - 151,474,112 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3151,384,954 - 151,474,135 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03157,748,573 - 157,840,990 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera3143,077,638 - 143,168,240 (-)NCBICelera
Cytogenetic Map3q42NCBI
LOC102012974
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542226,009,078 - 26,096,300 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542226,009,078 - 26,096,300 (+)NCBIChiLan1.0ChiLan1.0
UQCC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12424,285,147 - 24,381,819 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2424,286,320 - 24,381,699 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2423,931,045 - 24,027,512 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02424,977,348 - 25,074,111 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2424,975,855 - 25,074,003 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12424,264,179 - 24,360,878 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02424,359,193 - 24,455,898 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02424,798,305 - 24,894,928 (-)NCBIUU_Cfam_GSD_1.0
LOC101971618
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640173,295,851 - 173,390,648 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365615,358,779 - 5,450,957 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365615,358,954 - 5,453,583 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UQCC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1738,658,579 - 38,775,328 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11738,661,544 - 38,775,354 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21744,042,305 - 44,072,594 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UQCC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1256,209,851 - 56,317,572 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl256,209,485 - 56,317,620 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660872,360,513 - 2,468,739 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101697349
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248423,977,737 - 4,084,558 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248423,978,051 - 4,085,983 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000057458   ⟹   ENSPPAP00000034575
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2032,754,820 - 32,861,330 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000057467   ⟹   ENSPPAP00000034584
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2032,756,176 - 32,861,151 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000057475   ⟹   ENSPPAP00000034592
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2032,756,176 - 32,861,151 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000057482   ⟹   ENSPPAP00000034599
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2032,756,176 - 32,861,151 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000057486   ⟹   ENSPPAP00000034603
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2032,756,176 - 32,861,151 (-)Ensembl
RefSeq Acc Id: XM_003831845   ⟹   XP_003831893
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22141,037,093 - 41,146,181 (-)NCBI
NHGRI_mPanPan12041,030,197 - 41,138,162 (-)NCBI
Mhudiblu_PPA_v02031,632,012 - 31,739,994 (-)NCBI
PanPan1.12032,754,820 - 32,861,330 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003831847   ⟹   XP_003831895
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22141,037,093 - 41,145,032 (-)NCBI
NHGRI_mPanPan12041,030,197 - 41,138,135 (-)NCBI
Mhudiblu_PPA_v02031,632,888 - 31,739,937 (-)NCBI
PanPan1.12032,755,696 - 32,861,198 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034947661   ⟹   XP_034803552
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22141,037,093 - 41,145,012 (-)NCBI
NHGRI_mPanPan12041,030,197 - 41,138,114 (-)NCBI
Mhudiblu_PPA_v02031,632,888 - 31,739,937 (-)NCBI
RefSeq Acc Id: XM_034947665   ⟹   XP_034803556
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22141,037,093 - 41,145,011 (-)NCBI
NHGRI_mPanPan12041,030,197 - 41,138,114 (-)NCBI
Mhudiblu_PPA_v02031,632,012 - 31,739,994 (-)NCBI
RefSeq Acc Id: XP_003831893   ⟸   XM_003831845
- Peptide Label: isoform X2
- UniProtKB: A0A2R9C1C8 (UniProtKB/TrEMBL),   A0A2R9C806 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003831895   ⟸   XM_003831847
- Peptide Label: isoform X3
- UniProtKB: A0A2R9C806 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034803556   ⟸   XM_034947665
- Peptide Label: isoform X4
- UniProtKB: A0A2R9C822 (UniProtKB/TrEMBL),   A0A2R9BY38 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034803552   ⟸   XM_034947661
- Peptide Label: isoform X1
- UniProtKB: A0A2R9C806 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000034575   ⟸   ENSPPAT00000057458
Ensembl Acc Id: ENSPPAP00000034584   ⟸   ENSPPAT00000057467
Ensembl Acc Id: ENSPPAP00000034592   ⟸   ENSPPAT00000057475
Ensembl Acc Id: ENSPPAP00000034603   ⟸   ENSPPAT00000057486
Ensembl Acc Id: ENSPPAP00000034599   ⟸   ENSPPAT00000057482
Protein Domains
Ubiquinol-cytochrome c chaperone


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000040071 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000057458.1 UniProtKB/TrEMBL
  ENSPPAT00000057467.1 UniProtKB/TrEMBL
  ENSPPAT00000057475.1 UniProtKB/TrEMBL
  ENSPPAT00000057482.1 UniProtKB/TrEMBL
  ENSPPAT00000057486.1 UniProtKB/TrEMBL
InterPro Ubiq_cyt_c_chap/UPF0174 UniProtKB/TrEMBL
  Ubiqinol_cyt_c_chaperone_CPB3 UniProtKB/TrEMBL
KEGG Report pps:100983071 UniProtKB/TrEMBL
NCBI Gene LOC100983071 ENTREZGENE
PANTHER PTHR12184 UniProtKB/TrEMBL
  UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX ASSEMBLY FACTOR 1 UniProtKB/TrEMBL
Pfam Ubiq_cyt_C_chap UniProtKB/TrEMBL
UniProt A0A2R9BY38 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BY45_PANPA UniProtKB/TrEMBL
  A0A2R9C1C8 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9C806 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9C822 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-13 LOC100983071  ubiquinol-cytochrome c reductase complex assembly factor 1  LOC100983071  ubiquinol-cytochrome-c reductase complex assembly factor 1  Symbol and/or name change 5135510 APPROVED