RPS8 (ribosomal protein S8) - Rat Genome Database

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Gene: RPS8 (ribosomal protein S8) Canis lupus familiaris
Analyze
Symbol: RPS8
Name: ribosomal protein S8
RGD ID: 12413593
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN ribosomal small subunit biogenesis (inferred); translation (inferred); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN cytosolic ribosome (ortholog); cytosolic small ribosomal subunit (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S8
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11515,542,569 - 15,545,285 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1515,542,580 - 15,545,163 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1515,662,878 - 15,665,489 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01515,698,190 - 15,700,801 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1515,697,116 - 15,700,775 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11515,495,395 - 15,498,006 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01515,562,696 - 15,565,307 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01515,635,756 - 15,638,369 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202   PMID:37756605  


Genomics

Comparative Map Data
RPS8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11515,542,569 - 15,545,285 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1515,542,580 - 15,545,163 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1515,662,878 - 15,665,489 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01515,698,190 - 15,700,801 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1515,697,116 - 15,700,775 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11515,495,395 - 15,498,006 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01515,562,696 - 15,565,307 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01515,635,756 - 15,638,369 (-)NCBIUU_Cfam_GSD_1.0
RPS8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38144,775,540 - 44,778,779 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl144,775,251 - 44,778,779 (+)EnsemblGRCh38hg38GRCh38
GRCh37145,241,212 - 45,244,451 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36145,013,833 - 45,016,999 (+)NCBINCBI36Build 36hg18NCBI36
Build 34144,910,338 - 44,913,505NCBI
Celera143,524,133 - 43,527,299 (+)NCBICelera
Cytogenetic Map1p34.1NCBI
HuRef143,354,301 - 43,357,468 (+)NCBIHuRef
CHM1_1145,357,155 - 45,360,321 (+)NCBICHM1_1
T2T-CHM13v2.0144,646,529 - 44,649,769 (+)NCBIT2T-CHM13v2.0
Rps8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394117,011,033 - 117,013,329 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4117,011,024 - 117,013,440 (-)EnsemblGRCm39 Ensembl
GRCm384117,153,836 - 117,156,132 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4117,153,827 - 117,156,243 (-)EnsemblGRCm38mm10GRCm38
MGSCv374116,826,441 - 116,828,737 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364116,651,768 - 116,654,064 (-)NCBIMGSCv36mm8
Celera4115,892,449 - 115,894,875 (-)NCBICelera
Cytogenetic Map4D1NCBI
cM Map453.41NCBI
Rps8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85135,866,941 - 135,869,511 (-)NCBIGRCr8
mRatBN7.25130,630,362 - 130,632,932 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5130,629,716 - 130,633,268 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5133,254,801 - 133,257,371 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05135,009,404 - 135,011,974 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05135,031,836 - 135,034,406 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05136,020,941 - 136,023,511 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5136,020,941 - 136,023,511 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05139,813,893 - 139,816,579 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45137,466,705 - 137,469,275 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15137,471,930 - 137,474,501 (-)NCBI
Celera5129,151,937 - 129,154,507 (-)NCBICelera
Cytogenetic Map5q36NCBI
Rps8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546413,443,631 - 13,445,389 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546413,443,580 - 13,445,391 (-)NCBIChiLan1.0ChiLan1.0
RPS8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21182,029,610 - 182,032,869 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11181,171,032 - 181,174,275 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0144,078,633 - 44,081,891 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1145,444,879 - 45,448,166 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl145,444,879 - 45,448,166 (+)Ensemblpanpan1.1panPan2
Rps8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505860,181,401 - 60,184,044 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647426,006,217 - 26,009,505 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647426,006,226 - 26,008,824 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6166,549,949 - 166,553,230 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16166,550,574 - 166,553,289 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26154,026,501 - 154,029,235 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPS8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12088,011,614 - 88,014,769 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2088,010,616 - 88,015,477 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603328,921,775 - 28,924,988 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624906669,496 - 672,635 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624906669,466 - 671,933 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RPS8
44 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000007636   ⟹   ENSCAFP00000007071
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1515,542,580 - 15,545,163 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845046507   ⟹   ENSCAFP00845036510
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1515,697,116 - 15,700,400 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845046569   ⟹   ENSCAFP00845036560
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1515,697,785 - 15,700,775 (-)Ensembl
RefSeq Acc Id: XM_038495901   ⟹   XP_038351829
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11515,495,395 - 15,498,006 (-)NCBI
RefSeq Acc Id: XM_038558273   ⟹   XP_038414201
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01515,635,756 - 15,638,369 (-)NCBI
RefSeq Acc Id: XM_038622163   ⟹   XP_038478091
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01515,562,696 - 15,565,307 (-)NCBI
RefSeq Acc Id: XM_038687899   ⟹   XP_038543827
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01515,698,190 - 15,700,801 (-)NCBI
RefSeq Acc Id: XM_857181   ⟹   XP_862274
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11515,542,569 - 15,545,285 (-)NCBI
Dog10K_Boxer_Tasha1515,662,878 - 15,665,489 (-)NCBI
Sequence:
RefSeq Acc Id: XP_862274   ⟸   XM_857181
- UniProtKB: A0A8C0NFR2 (UniProtKB/TrEMBL),   A0A8C0R2I4 (UniProtKB/TrEMBL),   A0A8I3PPA9 (UniProtKB/TrEMBL),   A0A8C0NFA0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000007071   ⟸   ENSCAFT00000007636
RefSeq Acc Id: XP_038351829   ⟸   XM_038495901
RefSeq Acc Id: XP_038478091   ⟸   XM_038622163
RefSeq Acc Id: XP_038543827   ⟸   XM_038687899
- UniProtKB: A0A8C0NFR2 (UniProtKB/TrEMBL),   A0A8C0R2I4 (UniProtKB/TrEMBL),   A0A8I3PPA9 (UniProtKB/TrEMBL),   A0A8C0NFA0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038414201   ⟸   XM_038558273
- UniProtKB: A0A8C0NFA0 (UniProtKB/TrEMBL),   A0A8C0NFR2 (UniProtKB/TrEMBL),   A0A8C0R2I4 (UniProtKB/TrEMBL),   A0A8I3PPA9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845036560   ⟸   ENSCAFT00845046569
Ensembl Acc Id: ENSCAFP00845036510   ⟸   ENSCAFT00845046507

Promoters
RGD ID:13685915
Promoter ID:EPDNEW_C3983
Type:multiple initiation site
Name:RPS8_1
Description:ribosomal protein S8
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11515,545,155 - 15,545,215EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000004745 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030014941 UniProtKB/TrEMBL
  ENSCAFG00040019878 UniProtKB/TrEMBL
  ENSCAFG00845026390 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000007636.5 UniProtKB/TrEMBL
  ENSCAFT00000109731.1 UniProtKB/TrEMBL
  ENSCAFT00030027561.1 UniProtKB/TrEMBL
  ENSCAFT00030027658.1 UniProtKB/TrEMBL
  ENSCAFT00040036749.1 UniProtKB/TrEMBL
  ENSCAFT00845046507.1 UniProtKB/TrEMBL
  ENSCAFT00845046569 ENTREZGENE
  ENSCAFT00845046569.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.168.20 UniProtKB/TrEMBL
  3.10.290.70 UniProtKB/TrEMBL
InterPro Ribosomal_protein_S8e_euk UniProtKB/TrEMBL
  Ribosomal_S8e UniProtKB/TrEMBL
  Ribosomal_S8e/biogenesis_NSA2 UniProtKB/TrEMBL
  Ribosomal_S8e_CS UniProtKB/TrEMBL
KEGG Report cfa:475381 UniProtKB/TrEMBL
NCBI Gene RPS8 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S8 UniProtKB/TrEMBL
  PTHR10394 UniProtKB/TrEMBL
Pfam Ribosomal_S8e UniProtKB/TrEMBL
PROSITE RIBOSOMAL_S8E UniProtKB/TrEMBL
UniProt A0A8C0NFA0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0NFR2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0R2I4 ENTREZGENE
  A0A8I3PPA9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PTU6_CANLF UniProtKB/TrEMBL
  A0A8P0PK90_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:103702 ENTREZGENE