CACNG7 (calcium voltage-gated channel auxiliary subunit gamma 7) - Rat Genome Database

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Gene: CACNG7 (calcium voltage-gated channel auxiliary subunit gamma 7) Canis lupus familiaris
Analyze
Symbol: CACNG7
Name: calcium voltage-gated channel auxiliary subunit gamma 7
RGD ID: 12399998
Description: ENCODES a protein that exhibits calcium channel regulator activity (ortholog); INVOLVED IN neurotransmitter receptor localization to postsynaptic specialization membrane (ortholog); positive regulation of dendrite extension (ortholog); regulation of mRNA stability (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); FOUND IN cerebellar mossy fiber (ortholog); early endosome (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC100855732; voltage-dependent calcium channel gamma-7 subunit; voltage-dependent calcium channel gamma-7 subunit-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11103,276,743 - 103,293,393 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1103,277,662 - 103,293,995 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1103,338,506 - 103,359,764 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01103,926,808 - 103,948,291 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11103,559,486 - 103,580,755 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01103,321,255 - 103,342,500 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01104,040,180 - 104,061,457 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CACNG7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11103,276,743 - 103,293,393 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1103,277,662 - 103,293,995 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1103,338,506 - 103,359,764 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01103,926,808 - 103,948,291 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11103,559,486 - 103,580,755 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01103,321,255 - 103,342,500 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01104,040,180 - 104,061,457 (-)NCBIUU_Cfam_GSD_1.0
CACNG7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381953,909,278 - 53,943,950 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1953,909,278 - 53,943,950 (+)EnsemblGRCh38hg38GRCh38
GRCh371954,412,532 - 54,447,204 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361959,107,883 - 59,138,080 (+)NCBINCBI36Build 36hg18NCBI36
Build 341959,107,882 - 59,138,080NCBI
Celera1951,457,105 - 51,485,939 (+)NCBICelera
Cytogenetic Map19q13.42NCBI
HuRef1950,735,318 - 50,764,119 (+)NCBIHuRef
CHM1_11954,417,785 - 54,448,738 (+)NCBICHM1_1
T2T-CHM13v2.01956,988,984 - 57,022,442 (+)NCBIT2T-CHM13v2.0
Cacng7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3973,381,341 - 3,416,737 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl73,381,471 - 3,416,737 (+)EnsemblGRCm39 Ensembl
GRCm3873,332,027 - 3,368,221 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl73,332,955 - 3,368,221 (+)EnsemblGRCm38mm10GRCm38
MGSCv3773,336,685 - 3,366,537 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera73,287,413 - 3,318,058 (+)NCBICelera
Cytogenetic Map7A1NCBI
cM Map71.95NCBI
Cacng7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8174,715,483 - 74,746,669 (-)NCBIGRCr8
mRatBN7.2165,800,059 - 65,831,246 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl165,800,355 - 65,831,006 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx171,249,507 - 71,275,759 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0179,672,501 - 79,698,749 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0173,005,758 - 73,032,036 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0164,374,547 - 64,405,380 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl164,374,603 - 64,405,149 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0163,367,593 - 63,397,433 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4164,114,233 - 64,140,485 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1164,191,698 - 64,218,596 (-)NCBI
Celera163,526,185 - 63,552,433 (-)NCBICelera
Cytogenetic Map1q12NCBI
Cacng7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955604241,170 - 260,594 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955604242,627 - 260,594 (-)NCBIChiLan1.0ChiLan1.0
CACNG7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22059,921,106 - 59,952,201 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11961,843,010 - 61,873,991 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01950,849,785 - 50,880,904 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11959,698,941 - 59,726,447 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1959,701,451 - 59,724,809 (+)Ensemblpanpan1.1panPan2
Cacng7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093492,811,484 - 2,830,589 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936994108,213 - 126,435 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936994107,973 - 126,317 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNG7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl656,188,168 - 56,212,505 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1656,188,362 - 56,211,655 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2653,003,529 - 53,027,058 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CACNG7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1646,602,072 - 46,631,975 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl646,605,245 - 46,632,416 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607326,679,331 - 26,709,584 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cacng7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248322,529,705 - 2,546,908 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248322,529,708 - 2,546,916 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CACNG7
23 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 1 7
Low 4 8 5 2 1
Below cutoff 1 5 13 6 6 6 6 6 8 8 5

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000046764   ⟹   ENSCAFP00000036147
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1103,277,662 - 103,293,995 (-)Ensembl
RefSeq Acc Id: XM_038467145   ⟹   XP_038323073
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11103,559,486 - 103,580,755 (-)NCBI
RefSeq Acc Id: XM_038527872   ⟹   XP_038383800
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01104,040,180 - 104,061,457 (-)NCBI
RefSeq Acc Id: XM_038592156   ⟹   XP_038448084
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01103,321,255 - 103,342,500 (-)NCBI
RefSeq Acc Id: XM_038655952   ⟹   XP_038511880
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01103,926,808 - 103,948,291 (-)NCBI
RefSeq Acc Id: XM_849184   ⟹   XP_854277
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11103,276,743 - 103,293,393 (-)NCBI
Dog10K_Boxer_Tasha1103,338,506 - 103,359,764 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_854277   ⟸   XM_849184
- UniProtKB: J9NRM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000036147   ⟸   ENSCAFT00000046764
RefSeq Acc Id: XP_038323073   ⟸   XM_038467145
RefSeq Acc Id: XP_038448084   ⟸   XM_038592156
RefSeq Acc Id: XP_038511880   ⟸   XM_038655952
RefSeq Acc Id: XP_038383800   ⟸   XM_038527872


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000029738 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030001322 UniProtKB/TrEMBL
  ENSCAFG00040000909 UniProtKB/TrEMBL
  ENSCAFG00845004174 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000046764.3 UniProtKB/TrEMBL
  ENSCAFT00000094069.1 UniProtKB/TrEMBL
  ENSCAFT00030002331.1 UniProtKB/TrEMBL
  ENSCAFT00040001645.1 UniProtKB/TrEMBL
  ENSCAFT00845007471.1 UniProtKB/TrEMBL
  ENSCAFT00845007479.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.140.150 UniProtKB/TrEMBL
InterPro PMP22/EMP/MP20/Claudin UniProtKB/TrEMBL
  VDCC_g7su UniProtKB/TrEMBL
  VDCC_gsu UniProtKB/TrEMBL
NCBI Gene CACNG7 ENTREZGENE
PANTHER PTHR12107:SF12 UniProtKB/TrEMBL
  VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA SUBUNIT UniProtKB/TrEMBL
Pfam Claudin_2 UniProtKB/TrEMBL
PRINTS VDCCGAMMA UniProtKB/TrEMBL
  VDCCGAMMA7 UniProtKB/TrEMBL
UniProt A0A8C0RV24_CANLF UniProtKB/TrEMBL
  A0A8I3MK78_CANLF UniProtKB/TrEMBL
  A0A8I3N7U5_CANLF UniProtKB/TrEMBL
  A0A8P0SR64_CANLF UniProtKB/TrEMBL
  J9NRM3 ENTREZGENE
VGNC ID VGNC:53674 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-14 CACNG7  calcium voltage-gated channel auxiliary subunit gamma 7  LOC100855732  voltage-dependent calcium channel gamma-7 subunit-like  Data merged from RGD:12202828 737654 PROVISIONAL