Cacng7 (calcium voltage-gated channel auxiliary subunit gamma 7) - Rat Genome Database

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Gene: Cacng7 (calcium voltage-gated channel auxiliary subunit gamma 7) Ictidomys tridecemlineatus
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Symbol: Cacng7
Name: calcium voltage-gated channel auxiliary subunit gamma 7
RGD ID: 12590815
Description: ENCODES a protein that exhibits calcium channel activity (inferred); calcium channel regulator activity (inferred); channel regulator activity (inferred); INVOLVED IN positive regulation of dendrite extension (ortholog); regulation of AMPA receptor activity (ortholog); regulation of mRNA stability (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN cerebellar mossy fiber (ortholog); early endosome (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: voltage-dependent calcium channel gamma-7 subunit
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093492,811,484 - 2,830,589 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936994108,213 - 126,435 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936994107,973 - 126,317 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cacng7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093492,811,484 - 2,830,589 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936994108,213 - 126,435 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936994107,973 - 126,317 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNG7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381953,909,278 - 53,943,950 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1953,909,278 - 53,943,950 (+)EnsemblGRCh38hg38GRCh38
GRCh371954,412,532 - 54,447,204 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361959,107,883 - 59,138,080 (+)NCBINCBI36Build 36hg18NCBI36
Build 341959,107,882 - 59,138,080NCBI
Celera1951,457,105 - 51,485,939 (+)NCBICelera
Cytogenetic Map19q13.42NCBI
HuRef1950,735,318 - 50,764,119 (+)NCBIHuRef
CHM1_11954,417,785 - 54,448,738 (+)NCBICHM1_1
T2T-CHM13v2.01956,988,984 - 57,022,442 (+)NCBIT2T-CHM13v2.0
Cacng7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3973,381,341 - 3,416,737 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl73,381,471 - 3,416,737 (+)EnsemblGRCm39 Ensembl
GRCm3873,332,027 - 3,368,221 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl73,332,955 - 3,368,221 (+)EnsemblGRCm38mm10GRCm38
MGSCv3773,336,685 - 3,366,537 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera73,287,413 - 3,318,058 (+)NCBICelera
Cytogenetic Map7A1NCBI
cM Map71.95NCBI
Cacng7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8174,715,483 - 74,746,669 (-)NCBIGRCr8
mRatBN7.2165,800,059 - 65,831,246 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl165,800,355 - 65,831,006 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx171,249,507 - 71,275,759 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0179,672,501 - 79,698,749 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0173,005,758 - 73,032,036 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0164,374,547 - 64,405,380 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl164,374,603 - 64,405,149 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0163,367,593 - 63,397,433 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4164,114,233 - 64,140,485 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1164,191,698 - 64,218,596 (-)NCBI
Celera163,526,185 - 63,552,433 (-)NCBICelera
Cytogenetic Map1q12NCBI
Cacng7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955604241,170 - 260,594 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955604242,627 - 260,594 (-)NCBIChiLan1.0ChiLan1.0
CACNG7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22059,921,106 - 59,952,201 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11961,843,010 - 61,873,991 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01950,849,785 - 50,880,904 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11959,698,941 - 59,726,447 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1959,701,451 - 59,724,809 (+)Ensemblpanpan1.1panPan2
CACNG7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11103,276,743 - 103,293,393 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1103,277,662 - 103,293,995 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1103,338,506 - 103,359,764 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01103,926,808 - 103,948,291 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1103,927,028 - 103,945,767 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11103,559,486 - 103,580,755 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01103,321,255 - 103,342,500 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01104,040,180 - 104,061,457 (-)NCBIUU_Cfam_GSD_1.0
CACNG7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl656,188,168 - 56,212,505 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1656,188,362 - 56,211,655 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2653,003,529 - 53,027,058 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CACNG7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1646,602,072 - 46,631,975 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl646,605,245 - 46,632,416 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607326,679,331 - 26,709,584 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cacng7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248322,529,705 - 2,546,908 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248322,529,708 - 2,546,916 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000024977   ⟹   ENSSTOP00000020119
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936994108,213 - 126,435 (+)Ensembl
RefSeq Acc Id: XM_005342261   ⟹   XP_005342318
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244093492,811,484 - 2,830,589 (-)NCBI
SpeTri2.0NW_004936994107,973 - 126,317 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040279926   ⟹   XP_040135860
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244093492,811,484 - 2,830,589 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005342318 (Get FASTA)   NCBI Sequence Viewer  
  XP_040135860 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000020119.1
GenBank Protein KAG3255683 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005342318   ⟸   XM_005342261
- Peptide Label: isoform X2
- UniProtKB: I3N6X3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040135860   ⟸   XM_040279926
- Peptide Label: isoform X1
Ensembl Acc Id: ENSSTOP00000020119   ⟸   ENSSTOT00000024977


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000028375 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000024977.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.140.150 UniProtKB/TrEMBL
InterPro CACNG_subunit UniProtKB/TrEMBL
  PMP22/EMP/MP20/Claudin UniProtKB/TrEMBL
  VDCC_g7su UniProtKB/TrEMBL
  VDCC_gsu UniProtKB/TrEMBL
NCBI Gene Cacng7 ENTREZGENE
PANTHER PTHR12107:SF12 UniProtKB/TrEMBL
  VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA SUBUNIT UniProtKB/TrEMBL
Pfam Claudin_2 UniProtKB/TrEMBL
PRINTS VDCCGAMMA UniProtKB/TrEMBL
  VDCCGAMMA7 UniProtKB/TrEMBL
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
UniProt I3N6X3 ENTREZGENE, UniProtKB/TrEMBL