PEMT (phosphatidylethanolamine N-methyltransferase)

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Gene: PEMT (phosphatidylethanolamine N-methyltransferase) Canis lupus familiaris

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Symbol:

PEMT

Name:

phosphatidylethanolamine N-methyltransferase

RGD ID:

12397198

Description:

ENCODES a protein that exhibits phosphatidylethanolamine binding (ortholog); phosphatidylethanolamine N-methyltransferase activity (ortholog); S-adenosylmethionine-dependent methyltransferase activity (ortholog); INVOLVED IN blastocyst hatching (ortholog); glycerophospholipid metabolic process (ortholog); negative regulation of cell population proliferation (ortholog); PARTICIPATES IN choline metabolic pathway; glycerophospholipid metabolic pathway; homocysteine metabolic pathway; ASSOCIATED WITH autistic disorder (ortholog); Birt-Hogg-Dube syndrome (ortholog); common variable immunodeficiency 2 (ortholog); FOUND IN brush border membrane (ortholog); sarcolemma (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	41,871,685 - 41,960,831 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	41,872,108 - 41,960,828 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	42,009,850 - 42,098,909 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	41,977,629 - 42,066,973 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	41,977,968 - 42,066,970 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	41,944,901 - 42,034,078 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	41,892,196 - 41,981,419 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	42,084,267 - 42,173,368 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Birt-Hogg-Dube syndrome (ISO)

common variable immunodeficiency 2 (ISO)

Experimental Diabetes Mellitus (ISO)

Experimental Liver Neoplasms (ISO)

Joubert syndrome 1 (ISO)

liver cirrhosis (ISO)

metabolic dysfunction and alcohol associated liver disease (ISO)

metabolic dysfunction-associated steatotic liver disease (ISO)

Potocki-Lupski syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

blastocyst hatching (IEA,ISO)

glycerophospholipid metabolic process (ISO)

lipid metabolic process (IEA)

methylation (IEA)

negative regulation of cell population proliferation (ISO)

phosphatidylcholine biosynthetic process (IEA,ISO)

phospholipid biosynthetic process (IEA)

positive regulation of cold-induced thermogenesis (IEA)

positive regulation of lipoprotein metabolic process (ISO)

response to amino acid (ISO)

response to ethanol (ISO)

response to nutrient (ISO)

response to vitamin (ISO)

response to xenobiotic stimulus (ISO)

S-adenosylhomocysteine metabolic process (ISO)

S-adenosylmethionine metabolic process (ISO)

sphingomyelin biosynthetic process (IEA,ISO)

Cellular Component

brush border membrane (ISO)

cytosol (IEA)

endoplasmic reticulum (IEA)

endoplasmic reticulum membrane (IEA)

intracellular membrane-bounded organelle (IEA)

membrane (IEA)

mitochondrial membrane (IEA)

mitochondrion (IEA)

sarcolemma (ISO)

Molecular Function

methyltransferase activity (IEA)

phosphatidyl-N-methylethanolamine N-methyltransferase activity (IEA)

phosphatidylethanolamine binding (ISO)

phosphatidylethanolamine N-methyltransferase activity (IEA,ISO)

protein binding (ISO)

S-adenosylmethionine-dependent methyltransferase activity (IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

choline metabolic pathway (ISO)

glycerophospholipid metabolic pathway (ISO)

homocysteine metabolic pathway (ISO)

methionine cycle/metabolic pathway (ISO)

remethylation pathway of homocysteine metabolism - cobalamin independent, betaine dependent (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

PEMT
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	41,871,685 - 41,960,831 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	41,872,108 - 41,960,828 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	42,009,850 - 42,098,909 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	41,977,629 - 42,066,973 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	41,977,968 - 42,066,970 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	41,944,901 - 42,034,078 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	41,892,196 - 41,981,419 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	42,084,267 - 42,173,368 (+)	NCBI		UU_Cfam_GSD_1.0

PEMT
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	17,505,563 - 17,592,142 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	17,505,563 - 17,591,708 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	17,408,877 - 17,495,022 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	17,349,602 - 17,435,719 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	17,349,603 - 17,421,504	NCBI
Celera	17	18,348,298 - 18,434,406 (-)	NCBI		Celera
Cytogenetic Map	17	p11.2	NCBI
HuRef	17	17,161,232 - 17,247,817 (-)	NCBI		HuRef
CHM1_1	17	17,417,546 - 17,503,772 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	17,452,171 - 17,538,580 (-)	NCBI		T2T-CHM13v2.0

Pemt
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	59,861,440 - 59,937,394 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	59,861,440 - 59,937,315 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	59,970,614 - 60,046,561 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	59,970,614 - 60,046,489 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	59,784,119 - 59,850,341 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	59,786,812 - 59,853,034 (-)	NCBI		MGSCv36	mm8
MGSCv36	11	60,507,197 - 60,573,128 (-)	NCBI		MGSCv36	mm8
Cytogenetic Map	11	B1.3	NCBI
cM Map	11	37.81	NCBI

Pemt
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	45,275,434 - 45,349,651 (-)	NCBI		GRCr8
mRatBN7.2	10	44,775,910 - 44,849,990 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	44,775,911 - 44,850,013 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	49,476,153 - 49,542,510 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	48,966,515 - 49,032,872 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	44,470,127 - 44,536,484 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	46,339,821 - 46,404,640 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	46,339,821 - 46,404,642 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	46,096,652 - 46,161,545 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.1	10	46,313,743 - 46,316,512 (-)	NCBI
Celera	10	44,035,617 - 44,101,504 (-)	NCBI		Celera
Cytogenetic Map	10	q22	NCBI

Pemt
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955577	367,288 - 443,138 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955577	365,031 - 443,138 (+)	NCBI	ChiLan1.0	ChiLan1.0

PEMT
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	52,021,447 - 52,112,143 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	56,733,691 - 56,819,906 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	33,703,800 - 33,790,470 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	38,651,026 - 38,737,202 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	38,651,024 - 38,737,202 (+)	Ensembl	panpan1.1		panPan2

Pemt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	61,659,756 - 61,735,456 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936741	1,128,616 - 1,207,499 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936741	1,131,792 - 1,207,460 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PEMT
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	12	60,880,367 - 60,919,279 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	63,139,567 - 63,158,686 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PEMT
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	16,540,096 - 16,626,251 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	16,539,985 - 16,611,279 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666059	4,287,408 - 4,373,208 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pemt
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624849	3,817,915 - 3,908,888 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624849	3,818,115 - 3,907,250 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in PEMT
774 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005620162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005620163	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038475926	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038475927	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038475928	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038475929	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038518280	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038537117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038537118	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038537119	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038537120	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038601245	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038601246	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038601247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038601248	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038665809	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038665810	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038665811	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038665812	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_536665	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000371	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000043606 ⟹ ENSCAFP00000040148

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	5	41,872,108 - 41,960,828 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000084963 ⟹ ENSCAFP00000052421

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	5	41,884,553 - 41,960,828 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845042404 ⟹ ENSCAFP00845033246

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	5	41,977,968 - 42,066,763 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845042461 ⟹ ENSCAFP00845033285

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	5	41,990,547 - 42,066,970 (+)	Ensembl

RefSeq Acc Id:

XM_005620162 ⟹ XP_005620219

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	5	41,879,007 - 41,960,828 (+)	NCBI
Dog10K_Boxer_Tasha	5	42,017,159 - 42,098,906 (+)	NCBI

Sequence:

show sequence

TGCTGTTGACCCGCAGCAAATCATTCCCTGAAGTGTCCTCAAAGCCTGCAGTAACGTGAAATTG
CTATGAGCCGCTTCCTTACCAACTCGTAGGGCTTCAGTAGCTGAGCCCATTCATCGGTGACCTG
AGTGGAATTATTCCTGGTTCTGGCAGACCTCTGCGTTATGACCTGGCTGCTGGGCTACGTGGAC
CCCTCGGATCCCTGCTTTGTGGCTGCCATCCTTACCATCGCTTTCAATCCACTCTTCTGGAATG
TGGTTGCAAGATGGGAACAGAAAACTCGCAAGCTGAGCAAGGCCTTCCGATCCCCCTACCTGGC
CTGCTACTCCTTGGGCGCTGCCATTTTGCTACTGAACATCTTGCGCTCACACTGCTTCACGCAG
GCCATGCTGAGCCAGCCCAAGATGGAGAGCCTGGATAACCCTATGGCCTACCGCGTGGGTCTCG
CGCTCCTGGGAGTGGGCAGCACGTTTGTGCTCTCCAGCTTCTTTGCCCTCGGCTTCACCGGGAC
CTTCCTAGGCGATTACTTCGGCATCCTCAAGGAGGCCAGAGTGACCACGTTCCCGTTCAACATC
CTGGACAACCCCATGTACTGGGGCAGCACGGCCAATTACCTGGGCTGGGCTGTCATGCACGCCA
GCCCCACCGGCCTGCTGCTGACCGTGGTTGTGGCCCTCATCTACAGGGTTGCCATCCTGTATGA
GGAGCCCTTCACCGCGCAGATCTACCAGCAGAAAGCCTCTTCTTCCCACAAGAGGAGCTGACCG
CCTGGGGCCACCCCTCTCAGAGTGGGCCTCCACCAGCCCCGAGGTCCAGGCCCTGCAGCGCAGA
GAAGGGTGCCCGGCCACCGCTCAGGGTTCGTGCCCAGCGAGGGCCACTCCAGTGCCTTGGAAAC
CTCTGCCTTGGGGGCCCTGGACATGCTGTCGTCTGGCCACTGAGCCCCCCTGTCTGCTGCCCCC
AGCACGTCCCAACTCACCAATAAAGGCACCTCGATGCCAGC

hide sequence

RefSeq Acc Id:

XM_005620163 ⟹ XP_005620220

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	5	41,871,685 - 41,960,828 (+)	NCBI
Dog10K_Boxer_Tasha	5	42,009,850 - 42,098,906 (+)	NCBI

Sequence:

show sequence

CTGGGCAAAAGCAGATCTCAGAAGAGGGCGGGGGACCCCGAGCCCGGGCCAAAGTCCAAGTCCG
CAGGGGGCTGCGCAGGAAGCTACTTGTACCTAGGACCCGCTGTCGCCGGCTCCGAGCTCCACCG
CCACCCAAGCACAGGGAGGCCAGGCAGACCTCTGCGTTATGACCTGGCTGCTGGGCTACGTGGA
CCCCTCGGATCCCTGCTTTGTGGCTGCCATCCTTACCATCGCTTTCAATCCACTCTTCTGGAAT
GTGGTTGCAAGATGGGAACAGAAAACTCGCAAGCTGAGCAAGGCCTTCCGATCCCCCTACCTGG
CCTGCTACTCCTTGGGCGCTGCCATTTTGCTACTGAACATCTTGCGCTCACACTGCTTCACGCA
GGCCATGCTGAGCCAGCCCAAGATGGAGAGCCTGGATAACCCTATGGCCTACCGCGTGGGTCTC
GCGCTCCTGGGAGTGGGCAGCACGTTTGTGCTCTCCAGCTTCTTTGCCCTCGGCTTCACCGGGA
CCTTCCTAGGCGATTACTTCGGCATCCTCAAGGAGGCCAGAGTGACCACGTTCCCGTTCAACAT
CCTGGACAACCCCATGTACTGGGGCAGCACGGCCAATTACCTGGGCTGGGCTGTCATGCACGCC
AGCCCCACCGGCCTGCTGCTGACCGTGGTTGTGGCCCTCATCTACAGGGTTGCCATCCTGTATG
AGGAGCCCTTCACCGCGCAGATCTACCAGCAGAAAGCCTCTTCTTCCCACAAGAGGAGCTGACC
GCCTGGGGCCACCCCTCTCAGAGTGGGCCTCCACCAGCCCCGAGGTCCAGGCCCTGCAGCGCAG
AGAAGGGTGCCCGGCCACCGCTCAGGGTTCGTGCCCAGCGAGGGCCACTCCAGTGCCTTGGAAA
CCTCTGCCTTGGGGGCCCTGGACATGCTGTCGTCTGGCCACTGAGCCCCCCTGTCTGCTGCCCC
CAGCACGTCCCAACTCACCAATAAAGGCACCTCGATGCCAGC

hide sequence

RefSeq Acc Id:

XM_038475926 ⟹ XP_038331854

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	5	41,957,694 - 42,034,078 (+)	NCBI

RefSeq Acc Id:

XM_038475927 ⟹ XP_038331855

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	5	41,945,280 - 42,034,075 (+)	NCBI

RefSeq Acc Id:

XM_038475928 ⟹ XP_038331856

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	5	41,952,210 - 42,034,075 (+)	NCBI

RefSeq Acc Id:

XM_038475929 ⟹ XP_038331857

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	5	41,944,901 - 42,034,075 (+)	NCBI

RefSeq Acc Id:

XM_038518280 ⟹ XP_038374208

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	5	42,022,647 - 42,098,909 (+)	NCBI

RefSeq Acc Id:

XM_038537117 ⟹ XP_038393045

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	5	42,097,063 - 42,173,368 (+)	NCBI

RefSeq Acc Id:

XM_038537118 ⟹ XP_038393046

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	5	42,084,646 - 42,173,365 (+)	NCBI

RefSeq Acc Id:

XM_038537119 ⟹ XP_038393047

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	5	42,091,576 - 42,173,365 (+)	NCBI

RefSeq Acc Id:

XM_038537120 ⟹ XP_038393048

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	5	42,084,267 - 42,173,365 (+)	NCBI

RefSeq Acc Id:

XM_038601245 ⟹ XP_038457173

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	5	41,904,987 - 41,981,419 (+)	NCBI

RefSeq Acc Id:

XM_038601246 ⟹ XP_038457174

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	5	41,892,575 - 41,981,416 (+)	NCBI

RefSeq Acc Id:

XM_038601247 ⟹ XP_038457175

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	5	41,899,505 - 41,981,416 (+)	NCBI

RefSeq Acc Id:

XM_038601248 ⟹ XP_038457176

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	5	41,892,196 - 41,981,416 (+)	NCBI

RefSeq Acc Id:

XM_038665809 ⟹ XP_038521737

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	5	41,990,428 - 42,066,973 (+)	NCBI

RefSeq Acc Id:

XM_038665810 ⟹ XP_038521738

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	5	41,978,008 - 42,066,970 (+)	NCBI

RefSeq Acc Id:

XM_038665811 ⟹ XP_038521739

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	5	41,984,939 - 42,066,970 (+)	NCBI

RefSeq Acc Id:

XM_038665812 ⟹ XP_038521740

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	5	41,977,629 - 42,066,970 (+)	NCBI

RefSeq Acc Id:

XM_536665 ⟹ XP_536665

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	5	41,872,114 - 41,960,831 (+)	NCBI
Dog10K_Boxer_Tasha	5	42,010,229 - 42,098,906 (+)	NCBI

Sequence:

show sequence

GCGGCCCTAGGTCCCCGTCCCCCGGGAGGTGGCCTGGCTGGGGCGACGTGGCGGCCCGCAGCAG
AGCCGATGAGCAGCTCGGTGGCGGGGCCCGACTGCTGCGGAGGCCTCGGCAATGTTGACTTTAG
GCAGGCAGACCTCTGCGTTATGACCTGGCTGCTGGGCTACGTGGACCCCTCGGATCCCTGCTTT
GTGGCTGCCATCCTTACCATCGCTTTCAATCCACTCTTCTGGAATGTGGTTGCAAGATGGGAAC
AGAAAACTCGCAAGCTGAGCAAGGCCTTCCGATCCCCCTACCTGGCCTGCTACTCCTTGGGCGC
TGCCATTTTGCTACTGAACATCTTGCGCTCACACTGCTTCACGCAGGCCATGCTGAGCCAGCCC
AAGATGGAGAGCCTGGATAACCCTATGGCCTACCGCGTGGGTCTCGCGCTCCTGGGAGTGGGCA
GCACGTTTGTGCTCTCCAGCTTCTTTGCCCTCGGCTTCACCGGGACCTTCCTAGGCGATTACTT
CGGCATCCTCAAGGAGGCCAGAGTGACCACGTTCCCGTTCAACATCCTGGACAACCCCATGTAC
TGGGGCAGCACGGCCAATTACCTGGGCTGGGCTGTCATGCACGCCAGCCCCACCGGCCTGCTGC
TGACCGTGGTTGTGGCCCTCATCTACAGGGTTGCCATCCTGTATGAGGAGCCCTTCACCGCGCA
GATCTACCAGCAGAAAGCCTCTTCTTCCCACAAGAGGAGCTGACCGCCTGGGGCCACCCCTCTC
AGAGTGGGCCTCCACCAGCCCCGAGGTCCAGGCCCTGCAGCGCAGAGAAGGGTGCCCGGCCACC
GCTCAGGGTTCGTGCCCAGCGAGGGCCACTCCAGTGCCTTGGAAACCTCTGCCTTGGGGGCCCT
GGACATGCTGTCGTCTGGCCACTGAGCCCCCCTGTCTGCTGCCCCCAGCACGTCCCAACTCACC
AATAAAGGCACCTCGATGCCAGCATC

hide sequence

Protein Sequences


Protein RefSeqs	XP_005620219	(Get FASTA)	NCBI Sequence Viewer
	XP_005620220	(Get FASTA)	NCBI Sequence Viewer
	XP_038331854	(Get FASTA)	NCBI Sequence Viewer
	XP_038331855	(Get FASTA)	NCBI Sequence Viewer
	XP_038331856	(Get FASTA)	NCBI Sequence Viewer
	XP_038331857	(Get FASTA)	NCBI Sequence Viewer
	XP_038374208	(Get FASTA)	NCBI Sequence Viewer
	XP_038393045	(Get FASTA)	NCBI Sequence Viewer
	XP_038393046	(Get FASTA)	NCBI Sequence Viewer
	XP_038393047	(Get FASTA)	NCBI Sequence Viewer
	XP_038393048	(Get FASTA)	NCBI Sequence Viewer
	XP_038457173	(Get FASTA)	NCBI Sequence Viewer
	XP_038457174	(Get FASTA)	NCBI Sequence Viewer
	XP_038457175	(Get FASTA)	NCBI Sequence Viewer
	XP_038457176	(Get FASTA)	NCBI Sequence Viewer
	XP_038521737	(Get FASTA)	NCBI Sequence Viewer
	XP_038521738	(Get FASTA)	NCBI Sequence Viewer
	XP_038521739	(Get FASTA)	NCBI Sequence Viewer
	XP_038521740	(Get FASTA)	NCBI Sequence Viewer
	XP_536665	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000040148.1
	ENSCAFP00000068812.1
	ENSCAFP00030002966.1
	ENSCAFP00040005915.1
	ENSCAFP00040005942.1
	ENSCAFP00845033246
	ENSCAFP00845033246.1
	ENSCAFP00845033285.1

RefSeq Acc Id:	XP_005620220 ⟸ XM_005620163
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0Q3G5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTWLLGYVDPSDPCFVAAILTIAFNPLFWNVVARWEQKTRKLSKAFRSPYLACYSLGAAILLLN ILRSHCFTQAMLSQPKMESLDNPMAYRVGLALLGVGSTFVLSSFFALGFTGTFLGDYFGILKEA RVTTFPFNILDNPMYWGSTANYLGWAVMHASPTGLLLTVVVALIYRVAILYEEPFTAQIYQQKA SSSHKRS hide sequence

RefSeq Acc Id:	XP_536665 ⟸ XM_536665
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0LX23 (UniProtKB/TrEMBL), A0A8I3S7Y2 (UniProtKB/TrEMBL), A0A8C0Q3G5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSSVAGPDCCGGLGNVDFRQADLCVMTWLLGYVDPSDPCFVAAILTIAFNPLFWNVVARWEQK TRKLSKAFRSPYLACYSLGAAILLLNILRSHCFTQAMLSQPKMESLDNPMAYRVGLALLGVGST FVLSSFFALGFTGTFLGDYFGILKEARVTTFPFNILDNPMYWGSTANYLGWAVMHASPTGLLLT VVVALIYRVAILYEEPFTAQIYQQKASSSHKRS hide sequence

RefSeq Acc Id:	XP_005620219 ⟸ XM_005620162
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0Q3G5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTWLLGYVDPSDPCFVAAILTIAFNPLFWNVVARWEQKTRKLSKAFRSPYLACYSLGAAILLLN ILRSHCFTQAMLSQPKMESLDNPMAYRVGLALLGVGSTFVLSSFFALGFTGTFLGDYFGILKEA RVTTFPFNILDNPMYWGSTANYLGWAVMHASPTGLLLTVVVALIYRVAILYEEPFTAQIYQQKA SSSHKRS hide sequence

Ensembl Acc Id:

ENSCAFP00000052421 ⟸ ENSCAFT00000084963

Ensembl Acc Id:

ENSCAFP00000040148 ⟸ ENSCAFT00000043606

RefSeq Acc Id:	XP_038331857 ⟸ XM_038475929
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038331855 ⟸ XM_038475927
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038331856 ⟸ XM_038475928
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038331854 ⟸ XM_038475926
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038457176 ⟸ XM_038601248
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038457174 ⟸ XM_038601246
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038457175 ⟸ XM_038601247
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038457173 ⟸ XM_038601245
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038521740 ⟸ XM_038665812
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0Q3G5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038521738 ⟸ XM_038665810
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0LX23 (UniProtKB/TrEMBL), A0A8I3S7Y2 (UniProtKB/TrEMBL), A0A8C0Q3G5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038521739 ⟸ XM_038665811
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0Q3G5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038521737 ⟸ XM_038665809
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0Q3G5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038374208 ⟸ XM_038518280
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0Q3G5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038393048 ⟸ XM_038537120
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0Q3G5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038393046 ⟸ XM_038537118
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0LX23 (UniProtKB/TrEMBL), A0A8C0Q3G5 (UniProtKB/TrEMBL), A0A8I3S7Y2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038393047 ⟸ XM_038537119
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0Q3G5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038393045 ⟸ XM_038537117
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0Q3G5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845033246 ⟸ ENSCAFT00845042404

Ensembl Acc Id:

ENSCAFP00845033285 ⟸ ENSCAFT00845042461

Promoters

RGD ID:

13683285

Promoter ID:

EPDNEW_C1353

Type:

initiation region

Name:

PEMT_1

Description:

phosphatidylethanolamine N-methyltransferase

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	5	41,871,770 - 41,871,830	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000028791	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030001834	UniProtKB/TrEMBL
	ENSCAFG00040003581	UniProtKB/TrEMBL
	ENSCAFG00845024010	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000043606.3	UniProtKB/TrEMBL
	ENSCAFT00000109278.1	UniProtKB/TrEMBL
	ENSCAFT00030003347.1	UniProtKB/TrEMBL
	ENSCAFT00040006823.1	UniProtKB/TrEMBL
	ENSCAFT00040006853.1	UniProtKB/TrEMBL
	ENSCAFT00845042404	ENTREZGENE
	ENSCAFT00845042404.1	UniProtKB/TrEMBL
	ENSCAFT00845042461.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.120.1630	UniProtKB/TrEMBL
InterPro	PEMT/MFAP	UniProtKB/TrEMBL
	Phopholipid_MeTrfase	UniProtKB/TrEMBL
NCBI Gene	PEMT	ENTREZGENE
PANTHER	PHOSPHATIDYLETHANOLAMINE N-METHYLTRANSFERASE	UniProtKB/TrEMBL
	PTHR15458	UniProtKB/TrEMBL
Pfam	PEMT	UniProtKB/TrEMBL
PIRSF	PEMT	UniProtKB/TrEMBL
PROSITE	SAM_PEMT_PEM2	UniProtKB/TrEMBL
UniProt	A0A8C0LX23	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0Q3G5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0Q504_CANLF	UniProtKB/TrEMBL
	A0A8I3PGW2_CANLF	UniProtKB/TrEMBL
	A0A8I3S7Y2	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	A0A8P0PHW9	UniProtKB/TrEMBL
VGNC ID	VGNC:44418	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

Imported Annotations - SMPDB

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Annotations - SMPDB