NOD1 (nucleotide binding oligomerization domain containing 1) - Rat Genome Database

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Gene: NOD1 (nucleotide binding oligomerization domain containing 1) Canis lupus familiaris
Analyze
Symbol: NOD1
Name: nucleotide binding oligomerization domain containing 1
RGD ID: 12337826
Description: ENCODES a protein that exhibits CARD domain binding (inferred); identical protein binding (inferred); pattern recognition receptor activity (inferred); INVOLVED IN defense response to Gram-positive bacterium (ortholog); ERK1 and ERK2 cascade (ortholog); JNK cascade (ortholog); ASSOCIATED WITH asthma (ortholog); bacterial pneumonia (ortholog); Cardiac Fibrosis (ortholog); FOUND IN plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nucleotide-binding oligomerization domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11443,162,671 - 43,226,948 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1443,163,571 - 43,227,103 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1442,595,450 - 42,659,740 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01443,105,467 - 43,168,383 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1443,105,475 - 43,194,265 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11443,221,377 - 43,284,335 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01442,900,527 - 42,960,255 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01443,258,705 - 43,321,637 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
cellular response to muramyl dipeptide  (IEA)
defense response to bacterium  (IEA)
defense response to Gram-negative bacterium  (IEA)
defense response to Gram-positive bacterium  (IEA,ISO)
detection of bacterium  (IEA)
ERK1 and ERK2 cascade  (IEA,ISO)
innate immune response  (IEA)
intracellular signal transduction  (IEA)
JNK cascade  (IEA,ISO)
nucleotide-binding oligomerization domain containing 1 signaling pathway  (IEA)
pattern recognition receptor signaling pathway  (IEA)
positive regulation of apoptotic process  (ISO)
positive regulation of autophagy  (IEA)
positive regulation of canonical NF-kappaB signal transduction  (IEA,ISO)
positive regulation of cysteine-type endopeptidase activity  (ISO)
positive regulation of dendritic cell antigen processing and presentation  (IEA)
positive regulation of ERK1 and ERK2 cascade  (IEA,ISO)
positive regulation of interleukin-1 beta production  (ISO)
positive regulation of interleukin-6 production  (IEA,ISO)
positive regulation of interleukin-8 production  (IEA)
positive regulation of JNK cascade  (IEA,ISO)
positive regulation of macrophage cytokine production  (IEA,ISO)
positive regulation of NF-kappaB transcription factor activity  (ISO)
positive regulation of nitric-oxide synthase activity  (ISO)
positive regulation of non-canonical NF-kappaB signal transduction  (IEA)
positive regulation of stress-activated MAPK cascade  (IEA,ISO)
positive regulation of tumor necrosis factor production  (IEA,ISO)
positive regulation of xenophagy  (IEA,ISO)
regulation of apoptotic process  (IEA)
response to endoplasmic reticulum stress  (IEA)
stress-activated MAPK cascade  (IEA,ISO)
xenophagy  (IEA,ISO)

Cellular Component

References
Additional References at PubMed
PMID:19604345   PMID:22301074   PMID:22321737  


Genomics

Comparative Map Data
NOD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11443,162,671 - 43,226,948 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1443,163,571 - 43,227,103 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1442,595,450 - 42,659,740 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01443,105,467 - 43,168,383 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1443,105,475 - 43,194,265 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11443,221,377 - 43,284,335 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01442,900,527 - 42,960,255 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01443,258,705 - 43,321,637 (-)NCBIUU_Cfam_GSD_1.0
NOD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38730,424,527 - 30,478,784 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl730,424,527 - 30,478,784 (-)EnsemblGRCh38hg38GRCh38
GRCh37730,464,143 - 30,518,400 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36730,430,675 - 30,484,790 (-)NCBINCBI36Build 36hg18NCBI36
Build 34730,237,389 - 30,291,505NCBI
Celera730,453,464 - 30,507,713 (-)NCBICelera
Cytogenetic Map7p14.3NCBI
HuRef730,346,423 - 30,400,669 (-)NCBIHuRef
CHM1_1730,464,171 - 30,518,245 (-)NCBICHM1_1
T2T-CHM13v2.0730,562,221 - 30,616,484 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2730,513,913 - 30,568,158 (-)NCBI
Nod1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39654,900,927 - 54,949,655 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl654,900,934 - 54,949,597 (-)EnsemblGRCm39 Ensembl
GRCm38654,923,942 - 54,972,674 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl654,923,949 - 54,972,612 (-)EnsemblGRCm38mm10GRCm38
MGSCv37654,873,936 - 54,922,606 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36654,853,527 - 54,901,991 (-)NCBIMGSCv36mm8
Celera655,457,493 - 55,496,882 (-)NCBICelera
Cytogenetic Map6B3NCBI
cM Map627.22NCBI
Nod1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8485,391,142 - 85,442,281 (-)NCBIGRCr8
mRatBN7.2484,060,871 - 84,111,668 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl484,060,880 - 84,111,404 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx489,285,035 - 89,334,440 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0485,060,457 - 85,109,860 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0483,471,807 - 83,522,335 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0485,123,965 - 85,175,206 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl485,123,960 - 85,174,951 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04149,781,209 - 149,832,175 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4483,398,809 - 83,449,207 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera478,928,394 - 78,978,728 (-)NCBICelera
Cytogenetic Map4q24NCBI
Nod1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541031,681,077 - 31,725,173 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541031,681,191 - 31,725,173 (-)NCBIChiLan1.0ChiLan1.0
NOD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2635,258,093 - 35,306,265 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1783,582,820 - 83,631,444 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0731,060,245 - 31,109,012 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1731,182,275 - 31,230,388 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl731,182,275 - 31,208,742 (-)Ensemblpanpan1.1panPan2
Nod1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511887,505,623 - 87,556,280 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364786,715,245 - 6,768,372 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364786,717,354 - 6,768,293 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NOD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1842,432,050 - 42,512,264 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11842,464,667 - 42,509,135 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21846,989,047 - 47,012,192 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NOD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12127,907,628 - 27,957,621 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2127,926,710 - 27,957,619 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604276,740,001 - 76,789,440 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nod1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624739285,689 - 341,956 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624739285,791 - 339,752 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NOD1
1003 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005628676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014119091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014119093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038444677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038444690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038494955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038494956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038494957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038494958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038494959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038494960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038557224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038557225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038557226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038557227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038557228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038557229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038621163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038621164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038621165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038621166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038621167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038621168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038686844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038686845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038686846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038686847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038686848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038686849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_539499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002633058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005306127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005335890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005335891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005369647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005369648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005403950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005403951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005437400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005437401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF681170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000004933   ⟹   ENSCAFP00000004572
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1443,163,571 - 43,227,103 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000073113   ⟹   ENSCAFP00000062754
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1443,163,571 - 43,227,103 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000075997   ⟹   ENSCAFP00000061157
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1443,163,571 - 43,227,103 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000077487   ⟹   ENSCAFP00000055684
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1443,163,571 - 43,227,103 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000083596   ⟹   ENSCAFP00000057735
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1443,163,571 - 43,227,103 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845034322   ⟹   ENSCAFP00845026868
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1443,105,475 - 43,194,265 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845034406   ⟹   ENSCAFP00845026943
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1443,105,475 - 43,194,265 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845034502   ⟹   ENSCAFP00845027025
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1443,105,475 - 43,194,265 (-)Ensembl
RefSeq Acc Id: XM_005628676   ⟹   XP_005628733
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11443,162,671 - 43,226,938 (-)NCBI
Dog10K_Boxer_Tasha1442,595,450 - 42,659,692 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014119091   ⟹   XP_013974566
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11443,162,671 - 43,226,938 (-)NCBI
Dog10K_Boxer_Tasha1442,595,450 - 42,659,693 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014119093   ⟹   XP_013974568
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11443,162,671 - 43,226,944 (-)NCBI
Dog10K_Boxer_Tasha1442,595,450 - 42,659,740 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038444677   ⟹   XP_038300605
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1442,595,450 - 42,659,740 (-)NCBI
RefSeq Acc Id: XM_038444690   ⟹   XP_038300618
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1442,595,450 - 42,659,740 (-)NCBI
RefSeq Acc Id: XM_038494955   ⟹   XP_038350883
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11443,221,377 - 43,284,335 (-)NCBI
RefSeq Acc Id: XM_038494956   ⟹   XP_038350884
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11443,221,377 - 43,284,325 (-)NCBI
RefSeq Acc Id: XM_038494957   ⟹   XP_038350885
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11443,221,377 - 43,284,335 (-)NCBI
RefSeq Acc Id: XM_038494958   ⟹   XP_038350886
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11443,221,377 - 43,284,325 (-)NCBI
RefSeq Acc Id: XM_038494959   ⟹   XP_038350887
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11443,221,377 - 43,284,335 (-)NCBI
RefSeq Acc Id: XM_038494960   ⟹   XP_038350888
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11443,221,377 - 43,284,335 (-)NCBI
RefSeq Acc Id: XM_038557224   ⟹   XP_038413152
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01443,258,705 - 43,321,637 (-)NCBI
RefSeq Acc Id: XM_038557225   ⟹   XP_038413153
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01443,258,705 - 43,321,630 (-)NCBI
RefSeq Acc Id: XM_038557226   ⟹   XP_038413154
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01443,258,705 - 43,321,637 (-)NCBI
RefSeq Acc Id: XM_038557227   ⟹   XP_038413155
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01443,258,705 - 43,321,630 (-)NCBI
RefSeq Acc Id: XM_038557228   ⟹   XP_038413156
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01443,258,705 - 43,321,637 (-)NCBI
RefSeq Acc Id: XM_038557229   ⟹   XP_038413157
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01443,258,705 - 43,321,637 (-)NCBI
RefSeq Acc Id: XM_038621163   ⟹   XP_038477091
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01442,900,527 - 42,960,255 (-)NCBI
RefSeq Acc Id: XM_038621164   ⟹   XP_038477092
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01442,900,527 - 42,960,248 (-)NCBI
RefSeq Acc Id: XM_038621165   ⟹   XP_038477093
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01442,900,527 - 42,960,255 (-)NCBI
RefSeq Acc Id: XM_038621166   ⟹   XP_038477094
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01442,900,527 - 42,960,248 (-)NCBI
RefSeq Acc Id: XM_038621167   ⟹   XP_038477095
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01442,900,527 - 42,960,255 (-)NCBI
RefSeq Acc Id: XM_038621168   ⟹   XP_038477096
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01442,900,527 - 42,960,255 (-)NCBI
RefSeq Acc Id: XM_038686844   ⟹   XP_038542772
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01443,105,467 - 43,168,383 (-)NCBI
RefSeq Acc Id: XM_038686845   ⟹   XP_038542773
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01443,105,467 - 43,168,376 (-)NCBI
RefSeq Acc Id: XM_038686846   ⟹   XP_038542774
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01443,105,467 - 43,168,383 (-)NCBI
RefSeq Acc Id: XM_038686847   ⟹   XP_038542775
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01443,105,467 - 43,168,376 (-)NCBI
RefSeq Acc Id: XM_038686848   ⟹   XP_038542776
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01443,105,467 - 43,168,383 (-)NCBI
RefSeq Acc Id: XM_038686849   ⟹   XP_038542777
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01443,105,467 - 43,168,383 (-)NCBI
RefSeq Acc Id: XM_539499   ⟹   XP_539499
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11443,162,671 - 43,226,948 (-)NCBI
Dog10K_Boxer_Tasha1442,595,450 - 42,659,719 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002633058
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11443,162,671 - 43,226,945 (-)NCBI
Dog10K_Boxer_Tasha1442,595,450 - 42,659,740 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005306127
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1442,595,450 - 42,659,740 (-)NCBI
RefSeq Acc Id: XR_005335890
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11443,221,377 - 43,284,335 (-)NCBI
RefSeq Acc Id: XR_005335891
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11443,221,377 - 43,284,335 (-)NCBI
RefSeq Acc Id: XR_005369647
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01443,258,705 - 43,321,637 (-)NCBI
RefSeq Acc Id: XR_005369648
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01443,258,705 - 43,321,637 (-)NCBI
RefSeq Acc Id: XR_005403950
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01442,900,527 - 42,960,255 (-)NCBI
RefSeq Acc Id: XR_005403951
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01442,900,527 - 42,960,255 (-)NCBI
RefSeq Acc Id: XR_005437400
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01443,105,467 - 43,168,383 (-)NCBI
RefSeq Acc Id: XR_005437401
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01443,105,467 - 43,168,383 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005628733 (Get FASTA)   NCBI Sequence Viewer  
  XP_013974566 (Get FASTA)   NCBI Sequence Viewer  
  XP_013974568 (Get FASTA)   NCBI Sequence Viewer  
  XP_038300605 (Get FASTA)   NCBI Sequence Viewer  
  XP_038300618 (Get FASTA)   NCBI Sequence Viewer  
  XP_038350883 (Get FASTA)   NCBI Sequence Viewer  
  XP_038350884 (Get FASTA)   NCBI Sequence Viewer  
  XP_038350885 (Get FASTA)   NCBI Sequence Viewer  
  XP_038350886 (Get FASTA)   NCBI Sequence Viewer  
  XP_038350887 (Get FASTA)   NCBI Sequence Viewer  
  XP_038350888 (Get FASTA)   NCBI Sequence Viewer  
  XP_038413152 (Get FASTA)   NCBI Sequence Viewer  
  XP_038413153 (Get FASTA)   NCBI Sequence Viewer  
  XP_038413154 (Get FASTA)   NCBI Sequence Viewer  
  XP_038413155 (Get FASTA)   NCBI Sequence Viewer  
  XP_038413156 (Get FASTA)   NCBI Sequence Viewer  
  XP_038413157 (Get FASTA)   NCBI Sequence Viewer  
  XP_038477091 (Get FASTA)   NCBI Sequence Viewer  
  XP_038477092 (Get FASTA)   NCBI Sequence Viewer  
  XP_038477093 (Get FASTA)   NCBI Sequence Viewer  
  XP_038477094 (Get FASTA)   NCBI Sequence Viewer  
  XP_038477095 (Get FASTA)   NCBI Sequence Viewer  
  XP_038477096 (Get FASTA)   NCBI Sequence Viewer  
  XP_038542772 (Get FASTA)   NCBI Sequence Viewer  
  XP_038542773 (Get FASTA)   NCBI Sequence Viewer  
  XP_038542774 (Get FASTA)   NCBI Sequence Viewer  
  XP_038542775 (Get FASTA)   NCBI Sequence Viewer  
  XP_038542776 (Get FASTA)   NCBI Sequence Viewer  
  XP_038542777 (Get FASTA)   NCBI Sequence Viewer  
  XP_539499 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AFA51123 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000004572.2
  ENSCAFP00000061157.1
  ENSCAFP00000062754.1
  ENSCAFP00030012110.1
  ENSCAFP00030012207.1
  ENSCAFP00030012244.1
  ENSCAFP00030012334.1
  ENSCAFP00030012402.1
  ENSCAFP00040008370.1
  ENSCAFP00040008409.1
  ENSCAFP00040008448.1
  ENSCAFP00845026868
  ENSCAFP00845026868.1
  ENSCAFP00845026943
  ENSCAFP00845026943.1
  ENSCAFP00845027025.1
RefSeq Acc Id: XP_539499   ⟸   XM_539499
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JTR0 (UniProtKB/TrEMBL),   A0A8C0QG94 (UniProtKB/TrEMBL),   A0A8I3PEL3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013974568   ⟸   XM_014119093
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JTR0 (UniProtKB/TrEMBL),   A0A8C0QG94 (UniProtKB/TrEMBL),   A0A8I3PEL3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005628733   ⟸   XM_005628676
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JTR0 (UniProtKB/TrEMBL),   A0A8C0QG94 (UniProtKB/TrEMBL),   A0A8I3PEL3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013974566   ⟸   XM_014119091
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JTR0 (UniProtKB/TrEMBL),   A0A8C0QG94 (UniProtKB/TrEMBL),   A0A8I3PEL3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000055684   ⟸   ENSCAFT00000077487
Ensembl Acc Id: ENSCAFP00000004572   ⟸   ENSCAFT00000004933
Ensembl Acc Id: ENSCAFP00000062754   ⟸   ENSCAFT00000073113
Ensembl Acc Id: ENSCAFP00000057735   ⟸   ENSCAFT00000083596
Ensembl Acc Id: ENSCAFP00000061157   ⟸   ENSCAFT00000075997
RefSeq Acc Id: XP_038350885   ⟸   XM_038494957
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038350887   ⟸   XM_038494959
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038350888   ⟸   XM_038494960
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038350883   ⟸   XM_038494955
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038350886   ⟸   XM_038494958
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038350884   ⟸   XM_038494956
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038477093   ⟸   XM_038621165
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038477095   ⟸   XM_038621167
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038477096   ⟸   XM_038621168
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038477091   ⟸   XM_038621163
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038477094   ⟸   XM_038621166
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038477092   ⟸   XM_038621164
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038542774   ⟸   XM_038686846
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JTR0 (UniProtKB/TrEMBL),   A0A8C0QG94 (UniProtKB/TrEMBL),   A0A8I3PEL3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038542776   ⟸   XM_038686848
- Peptide Label: isoform X2
- UniProtKB: A0A8C0Q3M9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038542777   ⟸   XM_038686849
- Peptide Label: isoform X3
- UniProtKB: A0A8C0RYF7 (UniProtKB/TrEMBL),   A0A8I3NYH2 (UniProtKB/TrEMBL),   A0A8C0MVQ2 (UniProtKB/TrEMBL),   A0A8C0Q3M9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038542772   ⟸   XM_038686844
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JTR0 (UniProtKB/TrEMBL),   A0A8C0QG94 (UniProtKB/TrEMBL),   A0A8I3PEL3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038542775   ⟸   XM_038686847
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JTR0 (UniProtKB/TrEMBL),   A0A8C0QG94 (UniProtKB/TrEMBL),   A0A8I3PEL3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038542773   ⟸   XM_038686845
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JTR0 (UniProtKB/TrEMBL),   A0A8C0QG94 (UniProtKB/TrEMBL),   A0A8I3PEL3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038300605   ⟸   XM_038444677
- Peptide Label: isoform X2
- UniProtKB: A0A8C0Q3M9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038300618   ⟸   XM_038444690
- Peptide Label: isoform X3
- UniProtKB: A0A8C0RYF7 (UniProtKB/TrEMBL),   A0A8I3NYH2 (UniProtKB/TrEMBL),   A0A8C0MVQ2 (UniProtKB/TrEMBL),   A0A8C0Q3M9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038413154   ⟸   XM_038557226
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JTR0 (UniProtKB/TrEMBL),   A0A8C0QG94 (UniProtKB/TrEMBL),   A0A8I3PEL3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038413156   ⟸   XM_038557228
- Peptide Label: isoform X2
- UniProtKB: A0A8C0Q3M9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038413157   ⟸   XM_038557229
- Peptide Label: isoform X3
- UniProtKB: A0A8C0MVQ2 (UniProtKB/TrEMBL),   A0A8C0Q3M9 (UniProtKB/TrEMBL),   A0A8C0RYF7 (UniProtKB/TrEMBL),   A0A8I3NYH2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038413152   ⟸   XM_038557224
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JTR0 (UniProtKB/TrEMBL),   A0A8C0QG94 (UniProtKB/TrEMBL),   A0A8I3PEL3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038413155   ⟸   XM_038557227
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JTR0 (UniProtKB/TrEMBL),   A0A8C0QG94 (UniProtKB/TrEMBL),   A0A8I3PEL3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038413153   ⟸   XM_038557225
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JTR0 (UniProtKB/TrEMBL),   A0A8C0QG94 (UniProtKB/TrEMBL),   A0A8I3PEL3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845026868   ⟸   ENSCAFT00845034322
Ensembl Acc Id: ENSCAFP00845027025   ⟸   ENSCAFT00845034502
Ensembl Acc Id: ENSCAFP00845026943   ⟸   ENSCAFT00845034406
Protein Domains
CARD   NACHT


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000003074 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030007558 UniProtKB/TrEMBL
  ENSCAFG00040005166 UniProtKB/TrEMBL
  ENSCAFG00845019451 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000004933.4 UniProtKB/TrEMBL
  ENSCAFT00000073113.2 UniProtKB/TrEMBL
  ENSCAFT00000075997.2 UniProtKB/TrEMBL
  ENSCAFT00030013873.1 UniProtKB/TrEMBL
  ENSCAFT00030013983.1 UniProtKB/TrEMBL
  ENSCAFT00030014030.1 UniProtKB/TrEMBL
  ENSCAFT00030014138.1 UniProtKB/TrEMBL
  ENSCAFT00030014220.1 UniProtKB/TrEMBL
  ENSCAFT00040009661.1 UniProtKB/TrEMBL
  ENSCAFT00040009701.1 UniProtKB/TrEMBL
  ENSCAFT00040009746.1 UniProtKB/TrEMBL
  ENSCAFT00845034322 ENTREZGENE
  ENSCAFT00845034322.1 UniProtKB/TrEMBL
  ENSCAFT00845034406 ENTREZGENE
  ENSCAFT00845034406.1 UniProtKB/TrEMBL
  ENSCAFT00845034502.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.533.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/TrEMBL
InterPro CARD UniProtKB/TrEMBL
  DEATH-like_dom_sf UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  NACHT_NTPase UniProtKB/TrEMBL
  NLR UniProtKB/TrEMBL
  NLRP_HD2 UniProtKB/TrEMBL
  NOD2_WH UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
KEGG Report cfa:482382 UniProtKB/TrEMBL
NCBI Gene NOD1 ENTREZGENE
PANTHER NACHT, LRR AND CARD DOMAINS-CONTAINING UniProtKB/TrEMBL
  NLR FAMILY CARD DOMAIN-CONTAINING PROTEIN 3 UniProtKB/TrEMBL
  NUCLEOTIDE-BINDING OLIGOMERIZATION DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam CARD UniProtKB/TrEMBL
  LRR_6 UniProtKB/TrEMBL
  NACHT UniProtKB/TrEMBL
  NLRC4_HD2 UniProtKB/TrEMBL
  NOD2_WH UniProtKB/TrEMBL
PROSITE CARD UniProtKB/TrEMBL
  NACHT UniProtKB/TrEMBL
SMART LRR_RI UniProtKB/TrEMBL
Superfamily-SCOP RNI-like UniProtKB/TrEMBL
  SSF47986 UniProtKB/TrEMBL
UniProt A0A8C0JTR0 ENTREZGENE
  A0A8C0MLY8_CANLF UniProtKB/TrEMBL
  A0A8C0MMG7_CANLF UniProtKB/TrEMBL
  A0A8C0MMP8_CANLF UniProtKB/TrEMBL
  A0A8C0MS46_CANLF UniProtKB/TrEMBL
  A0A8C0MVQ2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Q3M9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0QG94 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0RYF7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NYH2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PEL3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3S162_CANLF UniProtKB/TrEMBL
  A0A8P0PBM3_CANLF UniProtKB/TrEMBL
  H6BA91_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:43877 ENTREZGENE