SNCG (synuclein gamma) - Rat Genome Database

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Gene: SNCG (synuclein gamma) Canis lupus familiaris
Analyze
Symbol: SNCG
Name: synuclein gamma
RGD ID: 12330446
Description: ENCODES a protein that exhibits alpha-tubulin binding (ortholog); beta-tubulin binding (ortholog); INVOLVED IN adult locomotory behavior (ortholog); aggressive behavior (ortholog); cellular response to hydrostatic pressure (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); Animal Mammary Neoplasms (ortholog); FOUND IN axon terminus (ortholog); neuronal cell body (ortholog); perinuclear region of cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: gamma-synuclein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1434,604,867 - 34,608,851 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl434,605,091 - 34,608,842 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha434,596,074 - 34,600,277 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0434,965,024 - 34,969,227 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl434,964,991 - 34,969,222 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1434,811,241 - 34,814,866 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0434,980,171 - 34,983,796 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0435,486,039 - 35,489,664 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SNCG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1434,604,867 - 34,608,851 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl434,605,091 - 34,608,842 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha434,596,074 - 34,600,277 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0434,965,024 - 34,969,227 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl434,964,991 - 34,969,222 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1434,811,241 - 34,814,866 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0434,980,171 - 34,983,796 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0435,486,039 - 35,489,664 (+)NCBIUU_Cfam_GSD_1.0
SNCG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381086,955,759 - 86,963,258 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1086,958,599 - 86,963,258 (+)EnsemblGRCh38hg38GRCh38
GRCh371088,715,516 - 88,723,015 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361088,708,395 - 88,712,995 (+)NCBINCBI36Build 36hg18NCBI36
Build 341088,708,392 - 88,712,995NCBI
Celera1082,721,288 - 82,726,017 (+)NCBICelera
Cytogenetic Map10q23.2NCBI
HuRef1082,572,080 - 82,576,806 (+)NCBIHuRef
CHM1_11089,000,021 - 89,004,751 (+)NCBICHM1_1
T2T-CHM13v2.01087,839,472 - 87,846,971 (+)NCBIT2T-CHM13v2.0
Sncg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391434,092,231 - 34,096,626 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1434,092,231 - 34,096,746 (-)EnsemblGRCm39 Ensembl
GRCm381434,370,274 - 34,374,669 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1434,370,274 - 34,374,789 (-)EnsemblGRCm38mm10GRCm38
MGSCv371435,183,460 - 35,187,855 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361433,199,367 - 33,203,742 (-)NCBIMGSCv36mm8
Celera1430,636,519 - 30,640,914 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1420.81NCBI
Sncg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8169,706,765 - 9,712,072 (-)NCBIGRCr8
mRatBN7.2169,700,513 - 9,705,751 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl169,700,514 - 9,705,368 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx169,720,641 - 9,725,221 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01610,865,356 - 10,869,935 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0169,715,722 - 9,720,302 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01610,722,110 - 10,726,648 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1610,722,106 - 10,726,707 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0169,049,950 - 9,054,488 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41610,025,978 - 10,030,516 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11610,025,976 - 10,030,511 (-)NCBI
Celera165,511,856 - 5,516,394 (+)NCBICelera
Cytogenetic Map16p15NCBI
Sncg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555105,958,276 - 5,961,719 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555105,958,276 - 5,961,719 (+)NCBIChiLan1.0ChiLan1.0
SNCG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2898,953,010 - 98,957,933 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11098,958,333 - 98,963,252 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01083,383,566 - 83,391,064 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11086,940,295 - 86,947,770 (+)NCBIpanpan1.1PanPan1.1panPan2
Sncg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721343,906,537 - 43,911,351 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493680416,614 - 21,969 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493680416,869 - 21,684 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNCG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1487,904,659 - 87,922,095 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11487,916,353 - 87,922,111 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21495,191,841 - 95,197,607 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SNCG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1944,907,840 - 44,914,750 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl944,907,728 - 44,912,510 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660485,015,742 - 5,020,557 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sncg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624841192,398 - 196,064 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624841192,396 - 196,568 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SNCG
80 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005619441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038534531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038598855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038663133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005324292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005324293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005334798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005334806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005358086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005358087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005392589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005392590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005425699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005425700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000025533   ⟹   ENSCAFP00000023707
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl434,605,448 - 34,608,842 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000073081   ⟹   ENSCAFP00000060567
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl434,605,091 - 34,607,454 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000086865   ⟹   ENSCAFP00000054589
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl434,605,091 - 34,607,416 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845012513   ⟹   ENSCAFP00845009775
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl434,964,991 - 34,969,222 (+)Ensembl
RefSeq Acc Id: XM_005619441   ⟹   XP_005619498
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1434,604,867 - 34,608,851 (+)NCBI
Dog10K_Boxer_Tasha434,596,671 - 34,600,277 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038473463   ⟹   XP_038329391
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1434,811,254 - 34,814,866 (+)NCBI
RefSeq Acc Id: XM_038534531   ⟹   XP_038390459
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0435,486,052 - 35,489,664 (+)NCBI
RefSeq Acc Id: XM_038598855   ⟹   XP_038454783
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0434,980,184 - 34,983,796 (+)NCBI
RefSeq Acc Id: XM_038663133   ⟹   XP_038519061
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0434,965,621 - 34,969,227 (+)NCBI
RefSeq Acc Id: XR_005324292
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1434,811,241 - 34,814,431 (+)NCBI
RefSeq Acc Id: XR_005324293
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1434,811,241 - 34,814,431 (+)NCBI
RefSeq Acc Id: XR_005334798
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha434,596,074 - 34,599,842 (+)NCBI
RefSeq Acc Id: XR_005334806
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha434,596,074 - 34,599,842 (+)NCBI
RefSeq Acc Id: XR_005358086
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0435,486,039 - 35,489,229 (+)NCBI
RefSeq Acc Id: XR_005358087
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0435,486,039 - 35,489,229 (+)NCBI
RefSeq Acc Id: XR_005392589
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0434,980,171 - 34,983,361 (+)NCBI
RefSeq Acc Id: XR_005392590
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0434,980,171 - 34,983,361 (+)NCBI
RefSeq Acc Id: XR_005425699
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0434,965,024 - 34,968,792 (+)NCBI
RefSeq Acc Id: XR_005425700
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0434,965,024 - 34,968,792 (+)NCBI
RefSeq Acc Id: XP_005619498   ⟸   XM_005619441
- UniProtKB: A0A8C0LYY3 (UniProtKB/TrEMBL),   A0A8I3MU58 (UniProtKB/TrEMBL),   A0A8C0KIL7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000023707   ⟸   ENSCAFT00000025533
Ensembl Acc Id: ENSCAFP00000060567   ⟸   ENSCAFT00000073081
Ensembl Acc Id: ENSCAFP00000054589   ⟸   ENSCAFT00000086865
RefSeq Acc Id: XP_038329391   ⟸   XM_038473463
RefSeq Acc Id: XP_038454783   ⟸   XM_038598855
RefSeq Acc Id: XP_038519061   ⟸   XM_038663133
- UniProtKB: A0A8C0LYY3 (UniProtKB/TrEMBL),   A0A8I3MU58 (UniProtKB/TrEMBL),   A0A8C0KIL7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038390459   ⟸   XM_038534531
- UniProtKB: A0A8C0KIL7 (UniProtKB/TrEMBL),   A0A8C0LYY3 (UniProtKB/TrEMBL),   A0A8I3MU58 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845009775   ⟸   ENSCAFT00845012513


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000016091 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030000663 UniProtKB/TrEMBL
  ENSCAFG00040010770 UniProtKB/TrEMBL
  ENSCAFG00845007049 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000025533.4 UniProtKB/TrEMBL
  ENSCAFT00030001110.1 UniProtKB/TrEMBL
  ENSCAFT00040019954.1 UniProtKB/TrEMBL
  ENSCAFT00845012513 ENTREZGENE
  ENSCAFT00845012513.1 UniProtKB/TrEMBL
Gene3D-CATH Helix hairpin bin UniProtKB/TrEMBL
InterPro Synuclein UniProtKB/TrEMBL
  Synuclein_gamma UniProtKB/TrEMBL
NCBI Gene SNCG ENTREZGENE
PANTHER GAMMA-SYNUCLEIN UniProtKB/TrEMBL
  PTHR13820 UniProtKB/TrEMBL
Pfam Synuclein UniProtKB/TrEMBL
PRINTS GSYNUCLEIN UniProtKB/TrEMBL
  SYNUCLEIN UniProtKB/TrEMBL
Superfamily-SCOP Synuclein UniProtKB/TrEMBL
UniProt A0A8C0KIL7 ENTREZGENE
  A0A8C0LYY3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MU58 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:46599 ENTREZGENE