Sncg (synuclein gamma) - Rat Genome Database

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Gene: Sncg (synuclein gamma) Ictidomys tridecemlineatus
Analyze
Symbol: Sncg
Name: synuclein gamma
RGD ID: 12626875
Description: ENCODES a protein that exhibits alpha-tubulin binding (ortholog); beta-tubulin binding (ortholog); INVOLVED IN adult locomotory behavior (ortholog); aggressive behavior (ortholog); cellular response to hydrostatic pressure (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); Animal Mammary Neoplasms (ortholog); Brain Injuries (ortholog); FOUND IN axon terminus (ortholog); neuronal cell body (ortholog); perinuclear region of cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: gamma-synuclein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721343,906,537 - 43,911,351 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493680416,614 - 21,969 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493680416,869 - 21,684 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Sncg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721343,906,537 - 43,911,351 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493680416,614 - 21,969 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493680416,869 - 21,684 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNCG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381086,955,759 - 86,963,258 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1086,958,599 - 86,963,258 (+)EnsemblGRCh38hg38GRCh38
GRCh371088,715,516 - 88,723,015 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361088,708,395 - 88,712,995 (+)NCBINCBI36Build 36hg18NCBI36
Build 341088,708,392 - 88,712,995NCBI
Celera1082,721,288 - 82,726,017 (+)NCBICelera
Cytogenetic Map10q23.2NCBI
HuRef1082,572,080 - 82,576,806 (+)NCBIHuRef
CHM1_11089,000,021 - 89,004,751 (+)NCBICHM1_1
T2T-CHM13v2.01087,839,472 - 87,846,971 (+)NCBIT2T-CHM13v2.0
Sncg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391434,092,231 - 34,096,626 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1434,092,231 - 34,096,746 (-)EnsemblGRCm39 Ensembl
GRCm381434,370,274 - 34,374,669 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1434,370,274 - 34,374,789 (-)EnsemblGRCm38mm10GRCm38
MGSCv371435,183,460 - 35,187,855 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361433,199,367 - 33,203,742 (-)NCBIMGSCv36mm8
Celera1430,636,519 - 30,640,914 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1420.81NCBI
Sncg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8169,706,765 - 9,712,072 (-)NCBIGRCr8
mRatBN7.2169,700,513 - 9,705,751 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl169,700,514 - 9,705,368 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx169,720,641 - 9,725,221 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01610,865,356 - 10,869,935 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0169,715,722 - 9,720,302 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01610,722,110 - 10,726,648 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1610,722,106 - 10,726,707 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0169,049,950 - 9,054,488 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41610,025,978 - 10,030,516 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11610,025,976 - 10,030,511 (-)NCBI
Celera165,511,856 - 5,516,394 (+)NCBICelera
Cytogenetic Map16p15NCBI
Sncg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555105,958,276 - 5,961,719 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555105,958,276 - 5,961,719 (+)NCBIChiLan1.0ChiLan1.0
SNCG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2898,953,010 - 98,957,933 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11098,958,333 - 98,963,252 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01083,383,566 - 83,391,064 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11086,940,295 - 86,947,770 (+)NCBIpanpan1.1PanPan1.1panPan2
SNCG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1434,604,867 - 34,608,851 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl434,605,091 - 34,608,842 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha434,596,074 - 34,600,277 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0434,965,024 - 34,969,227 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl434,964,991 - 34,969,222 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1434,811,241 - 34,814,866 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0434,980,171 - 34,983,796 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0435,486,039 - 35,489,664 (+)NCBIUU_Cfam_GSD_1.0
SNCG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1487,904,659 - 87,922,095 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11487,916,353 - 87,922,111 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21495,191,841 - 95,197,607 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SNCG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1944,907,840 - 44,914,750 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl944,907,728 - 44,912,510 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660485,015,742 - 5,020,557 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sncg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624841192,398 - 196,064 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624841192,396 - 196,568 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005340547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010002273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000015858   ⟹   ENSSTOP00000014196
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493680416,614 - 21,969 (-)Ensembl
RefSeq Acc Id: XM_005340547   ⟹   XP_005340604
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721343,906,537 - 43,911,351 (-)NCBI
SpeTri2.0NW_00493680416,869 - 21,684 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005340604 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000014196.2
GenBank Protein KAG3264534 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005340604   ⟸   XM_005340547
- UniProtKB: I3MQH1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000014196   ⟸   ENSSTOT00000015858


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000015859 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000015858.3 UniProtKB/TrEMBL
Gene3D-CATH Helix hairpin bin UniProtKB/TrEMBL
InterPro Synuclein UniProtKB/TrEMBL
  Synuclein_gamma UniProtKB/TrEMBL
NCBI Gene Sncg ENTREZGENE
PANTHER GAMMA-SYNUCLEIN UniProtKB/TrEMBL
  PTHR13820 UniProtKB/TrEMBL
Pfam Synuclein UniProtKB/TrEMBL
PRINTS GSYNUCLEIN UniProtKB/TrEMBL
  SYNUCLEIN UniProtKB/TrEMBL
Superfamily-SCOP Synuclein UniProtKB/TrEMBL
UniProt I3MQH1 ENTREZGENE, UniProtKB/TrEMBL