MIR130A (microRNA mir-130a) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: MIR130A (microRNA mir-130a) Canis lupus familiaris
Analyze
Symbol: MIR130A (Ensembl: cfa-mir-130a)
Name: microRNA mir-130a (Ensembl:cfa-mir-130a)
RGD ID: 12320066
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: cfa-mir-130a; microRNA 130a
RGD Orthologs
Human
Mouse
Rat
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11838,543,618 - 38,543,679 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1838,543,618 - 38,543,681 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1838,090,020 - 38,090,081 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01839,225,427 - 39,225,488 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11838,808,515 - 38,808,576 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01838,381,529 - 38,381,590 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01839,012,290 - 39,012,351 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
RISC complex  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:16381832   PMID:18392026  


Genomics

Comparative Map Data
MIR130A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11838,543,618 - 38,543,679 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1838,543,618 - 38,543,681 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1838,090,020 - 38,090,081 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01839,225,427 - 39,225,488 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11838,808,515 - 38,808,576 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01838,381,529 - 38,381,590 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01839,012,290 - 39,012,351 (-)NCBIUU_Cfam_GSD_1.0
MIR130A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381157,641,198 - 57,641,286 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1157,641,198 - 57,641,286 (+)EnsemblGRCh38hg38GRCh38
GRCh371157,408,671 - 57,408,759 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361157,165,246 - 57,165,334 (+)NCBINCBI36Build 36hg18NCBI36
Celera1154,765,156 - 54,765,244 (+)NCBICelera
Cytogenetic Map11q12.1NCBI
HuRef1153,757,429 - 53,757,517 (+)NCBIHuRef
CHM1_11157,274,889 - 57,274,977 (+)NCBICHM1_1
T2T-CHM13v2.01157,591,382 - 57,591,470 (+)NCBIT2T-CHM13v2.0
Mir130a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39284,571,459 - 84,571,522 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl284,571,459 - 84,571,522 (-)EnsemblGRCm39 Ensembl
GRCm38284,741,115 - 84,741,178 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl284,741,115 - 84,741,178 (-)EnsemblGRCm38mm10GRCm38
MGSCv37284,581,272 - 84,581,335 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera286,336,310 - 86,336,373 (-)NCBICelera
Cytogenetic Map2DNCBI
cM Map249.45NCBI
Mir130a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8390,229,228 - 90,229,315 (-)NCBIGRCr8
mRatBN7.2369,822,542 - 69,822,629 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl369,822,542 - 69,822,629 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx373,204,341 - 73,204,428 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0381,803,003 - 81,803,090 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0379,561,913 - 79,562,000 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0372,141,037 - 72,141,124 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl372,141,037 - 72,141,124 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0378,661,697 - 78,661,784 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera369,178,061 - 69,178,148 (-)NCBICelera
Cytogenetic Map3q24NCBI
MIR130A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl213,296,695 - 13,296,773 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1213,296,695 - 13,296,773 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2212,929,884 - 12,929,962 (-)NCBISscrofa10.2Sscrofa10.2susScr3


Expression

RNA-SEQ Expression

ectoderm
endocrine system
mesenchyme
mesoderm
nervous system
2 1 1 1 1

Sequence


Ensembl Acc Id: ENSCAFT00000032572
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1838,543,618 - 38,543,681 (-)Ensembl
RefSeq Acc Id: NR_049259
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11838,543,618 - 38,543,679 (-)NCBI
Dog10K_Boxer_Tasha1838,090,020 - 38,090,081 (-)NCBI
ROS_Cfam_1.01839,225,427 - 39,225,488 (-)NCBI
UMICH_Zoey_3.11838,808,515 - 38,808,576 (-)NCBI
UNSW_CanFamBas_1.01838,381,529 - 38,381,590 (-)NCBI
UU_Cfam_GSD_1.01839,012,290 - 39,012,351 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000020465 Ensembl
  ENSCAFG00845020601 ENTREZGENE
Ensembl Transcript ENSCAFT00845036297 ENTREZGENE
miRBase MI0008029 ENTREZGENE
NCBI Gene MIR130A ENTREZGENE
RNAcentral URS0000315338 RNACentral
  URS00007E3C87 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 MIR130A  microRNA mir-130a    microRNA 130a  Symbol and/or name change 5135510 APPROVED