OCIAD2 (OCIA domain containing 2) - Rat Genome Database

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Gene: OCIAD2 (OCIA domain containing 2) Canis lupus familiaris
Analyze
Symbol: OCIAD2
Name: OCIA domain containing 2
RGD ID: 12312097
Description: INVOLVED IN response to bacterium (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN endosome (inferred); mitochondrial inner membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: OCIA domain-containing protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11344,639,044 - 44,653,481 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1344,641,089 - 44,663,295 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1344,593,454 - 44,609,072 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01345,243,748 - 45,259,372 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1345,241,753 - 45,259,348 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11344,919,214 - 44,934,855 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01344,453,866 - 44,469,480 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01345,333,187 - 45,348,796 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
OCIAD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11344,639,044 - 44,653,481 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1344,641,089 - 44,663,295 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1344,593,454 - 44,609,072 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01345,243,748 - 45,259,372 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1345,241,753 - 45,259,348 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11344,919,214 - 44,934,855 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01344,453,866 - 44,469,480 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01345,333,187 - 45,348,796 (-)NCBIUU_Cfam_GSD_1.0
OCIAD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38448,885,019 - 48,906,828 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl448,885,019 - 48,906,937 (-)EnsemblGRCh38hg38GRCh38
GRCh37448,887,036 - 48,908,845 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36448,582,162 - 48,603,572 (-)NCBINCBI36Build 36hg18NCBI36
Build 34448,728,334 - 48,749,733NCBI
Celera449,335,798 - 49,357,208 (-)NCBICelera
Cytogenetic Map4p11NCBI
HuRef448,207,197 - 48,228,623 (-)NCBIHuRef
CHM1_1448,886,556 - 48,907,964 (-)NCBICHM1_1
T2T-CHM13v2.0448,851,611 - 48,873,422 (-)NCBIT2T-CHM13v2.0
Ociad2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39573,479,541 - 73,496,290 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl573,479,542 - 73,498,371 (-)EnsemblGRCm39 Ensembl
GRCm38573,322,198 - 73,338,947 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl573,322,199 - 73,341,028 (-)EnsemblGRCm38mm10GRCm38
MGSCv37573,713,438 - 73,729,878 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36573,601,927 - 73,617,696 (-)NCBIMGSCv36mm8
Celera570,576,762 - 70,593,183 (-)NCBICelera
Cytogenetic Map5C3.3NCBI
cM Map538.54NCBI
Ociad2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81435,225,291 - 35,243,306 (+)NCBIGRCr8
mRatBN7.21434,873,668 - 34,889,276 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1434,873,820 - 34,889,265 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1435,238,220 - 35,253,634 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01436,542,977 - 36,558,393 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01435,031,301 - 35,046,715 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01437,432,999 - 37,449,425 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1437,435,654 - 37,444,775 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01437,251,451 - 37,267,486 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41437,273,819 - 37,292,695 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1434,131,808 - 34,147,246 (+)NCBICelera
Cytogenetic Map14p11NCBI
Ociad2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544718,820,368 - 18,834,886 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544718,822,253 - 18,834,886 (+)NCBIChiLan1.0ChiLan1.0
OCIAD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2378,959,034 - 78,980,759 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1479,220,679 - 79,242,403 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0473,247,989 - 73,269,749 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1483,977,124 - 83,998,682 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl483,977,152 - 83,998,674 (+)Ensemblpanpan1.1panPan2
Ociad2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528531,463,363 - 31,483,293 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648214,815,570 - 14,834,263 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648214,817,008 - 14,834,454 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OCIAD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl838,772,714 - 38,793,216 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1838,771,281 - 38,793,511 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2840,880,338 - 41,028,600 (-)NCBISscrofa10.2Sscrofa10.2susScr3
OCIAD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1271,361,361 - 1,378,234 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl271,361,261 - 1,378,229 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604747,348,028 - 47,364,890 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ociad2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476118,119,184 - 18,135,269 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476118,119,769 - 18,135,269 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in OCIAD2
246 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 2 6 6 12
Low 3 13 3 6 3 4 8 10 5
Below cutoff 5 3 3 3 2 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000046450   ⟹   ENSCAFP00000039204
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1344,641,089 - 44,661,206 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000065263   ⟹   ENSCAFP00000045928
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1344,641,186 - 44,653,462 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000085785   ⟹   ENSCAFP00000052996
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1344,641,089 - 44,663,295 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845018466   ⟹   ENSCAFP00845014412
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1345,241,753 - 45,259,339 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845018496   ⟹   ENSCAFP00845014431
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1345,243,896 - 45,259,348 (-)Ensembl
RefSeq Acc Id: XM_038429424   ⟹   XP_038285352
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1344,593,454 - 44,609,072 (-)NCBI
RefSeq Acc Id: XM_038493740   ⟹   XP_038349668
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11344,919,214 - 44,934,855 (-)NCBI
RefSeq Acc Id: XM_038556057   ⟹   XP_038411985
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01345,333,187 - 45,348,796 (-)NCBI
RefSeq Acc Id: XM_038619989   ⟹   XP_038475917
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01344,453,866 - 44,469,480 (-)NCBI
RefSeq Acc Id: XM_038685598   ⟹   XP_038541526
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01345,243,748 - 45,259,372 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000045928   ⟸   ENSCAFT00000065263
RefSeq Acc Id: ENSCAFP00000039204   ⟸   ENSCAFT00000046450
RefSeq Acc Id: ENSCAFP00000052996   ⟸   ENSCAFT00000085785
RefSeq Acc Id: XP_038349668   ⟸   XM_038493740
RefSeq Acc Id: XP_038475917   ⟸   XM_038619989
RefSeq Acc Id: XP_038541526   ⟸   XM_038685598
- UniProtKB: A0A8C0SH13 (UniProtKB/TrEMBL),   A0A8I3NAS7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038285352   ⟸   XM_038429424
- UniProtKB: A0A8P0NQM9 (UniProtKB/TrEMBL),   A0A8I3NAS7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038411985   ⟸   XM_038556057
- UniProtKB: A0A8C0SH13 (UniProtKB/TrEMBL),   A0A8I3NAS7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845014431   ⟸   ENSCAFT00845018496
RefSeq Acc Id: ENSCAFP00845014412   ⟸   ENSCAFT00845018466
Protein Domains
OCIA


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000031331 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00040012913 UniProtKB/TrEMBL
  ENSCAFG00845010489 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000046450.3 UniProtKB/TrEMBL
  ENSCAFT00000065263.2 UniProtKB/TrEMBL
  ENSCAFT00000101807.1 UniProtKB/TrEMBL
  ENSCAFT00040023845.1 UniProtKB/TrEMBL
  ENSCAFT00040023898.1 UniProtKB/TrEMBL
  ENSCAFT00040023935.1 UniProtKB/TrEMBL
  ENSCAFT00040023973.1 UniProtKB/TrEMBL
  ENSCAFT00845018466 ENTREZGENE
  ENSCAFT00845018466.1 UniProtKB/TrEMBL
  ENSCAFT00845018496.1 UniProtKB/TrEMBL
InterPro OCAD1/2 UniProtKB/TrEMBL
  OCIA_dom UniProtKB/TrEMBL
NCBI Gene OCIAD2 ENTREZGENE
PANTHER OCIA DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
  PTHR13336 UniProtKB/TrEMBL
Pfam OCIA UniProtKB/TrEMBL
UniProt A0A8C0SH13 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SHF4_CANLF UniProtKB/TrEMBL
  A0A8C0SHW3_CANLF UniProtKB/TrEMBL
  A0A8C0YX69_CANLF UniProtKB/TrEMBL
  A0A8I3NAS7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RVU9_CANLF UniProtKB/TrEMBL
  A0A8P0NQM9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0TJK5_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:44093 ENTREZGENE