Symbol:
TET1
Name:
tet methylcytosine dioxygenase 1
RGD ID:
12294352
Description:
ENCODES a protein that exhibits dioxygenase activity (inferred); DNA 5-methylcytosine dioxygenase activity (inferred); DNA binding (inferred); INVOLVED IN dendrite morphogenesis (ortholog); epigenetic programing of male pronucleus (ortholog); inner cell mass cell differentiation (ortholog); PARTICIPATES IN DNA modification pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); hepatocellular carcinoma (ortholog); FOUND IN chromosome (inferred); nucleus (inferred)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
CXXC finger 6; CXXC6; methylcytosine dioxygenase TET1; tet oncogene 1
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 4 19,759,661 - 19,898,345 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 4 19,768,137 - 19,889,907 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 4 19,891,023 - 20,029,547 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 4 20,031,603 - 20,170,708 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 4 20,040,122 - 20,165,077 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 4 19,932,890 - 20,071,946 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 4 20,135,757 - 20,275,156 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 4 20,478,282 - 20,617,403 (+) NCBI UU_Cfam_GSD_1.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
TET1 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 4 19,759,661 - 19,898,345 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 4 19,768,137 - 19,889,907 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 4 19,891,023 - 20,029,547 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 4 20,031,603 - 20,170,708 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 4 20,040,122 - 20,165,077 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 4 19,932,890 - 20,071,946 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 4 20,135,757 - 20,275,156 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 4 20,478,282 - 20,617,403 (+) NCBI UU_Cfam_GSD_1.0
TET1 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 10 68,560,337 - 68,694,487 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 10 68,560,337 - 68,694,487 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 10 70,320,094 - 70,454,244 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 10 69,990,123 - 70,124,245 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 10 69,990,418 - 70,123,454 NCBI Celera 10 63,596,035 - 63,730,160 (+) NCBI Celera Cytogenetic Map 10 q21.3 NCBI HuRef 10 64,321,678 - 64,456,326 (+) NCBI HuRef CHM1_1 10 70,602,173 - 70,737,025 (+) NCBI CHM1_1 T2T-CHM13v2.0 10 69,429,559 - 69,563,685 (+) NCBI T2T-CHM13v2.0
Tet1 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 10 62,640,349 - 62,723,242 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 10 62,640,349 - 62,744,775 (-) Ensembl GRCm39 Ensembl GRCm38 10 62,804,570 - 62,887,469 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 10 62,804,570 - 62,908,996 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 10 62,267,318 - 62,342,762 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 10 62,207,059 - 62,275,371 (-) NCBI MGSCv36 mm8 Celera 10 63,905,755 - 63,981,217 (-) NCBI Celera Cytogenetic Map 10 B4 NCBI cM Map 10 32.48 NCBI
Tet1 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 20 25,766,806 - 25,839,598 (+) NCBI GRCr8 mRatBN7.2 20 25,761,042 - 25,840,926 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 20 25,768,120 - 25,833,052 (+) Ensembl mRatBN7.2 Ensembl Rnor_6.0 20 27,359,122 - 27,438,039 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 20 27,366,213 - 27,437,427 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 20 29,200,519 - 29,267,971 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 20 25,131,169 - 25,155,785 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 20 25,145,587 - 25,220,858 (-) NCBI Celera 20 27,057,215 - 27,136,909 (+) NCBI Celera Cytogenetic Map 20 q11 NCBI
Tet1 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 NW_004955425 20,767,406 - 20,857,165 (+) NCBI ChiLan1.0 ChiLan1.0
TET1 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 8 80,712,893 - 80,853,460 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 10 80,718,227 - 80,858,781 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 10 65,036,313 - 65,168,051 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 10 67,575,157 - 67,705,834 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 10 67,586,586 - 67,703,160 (+) Ensembl panpan1.1 panPan2
TET1 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 14 71,675,671 - 71,815,618 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 14 71,675,671 - 71,812,732 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 14 77,728,167 - 77,830,058 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
TET1 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 9 62,709,800 - 62,843,322 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 9 62,712,484 - 62,837,138 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666048 23,461,866 - 23,597,039 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Tet1
.
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
6
5
5
23
22
16
6
6
6
6
33
22
12
14
10
Too many to show, limit is 500. Download them if you would like to view them all.
Ensembl Acc Id:
ENSCAFT00000043209 ⟹ ENSCAFP00000038827
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source CanFam3.1 Ensembl 4 19,768,137 - 19,889,907 (+) Ensembl
Ensembl Acc Id:
ENSCAFT00845004339 ⟹ ENSCAFP00845003464
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source ROS_Cfam_1.0 Ensembl 4 20,040,122 - 20,165,077 (+) Ensembl
Ensembl Acc Id:
ENSCAFT00845004362 ⟹ ENSCAFP00845003484
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source ROS_Cfam_1.0 Ensembl 4 20,040,122 - 20,165,077 (+) Ensembl
RefSeq Acc Id:
XM_022417496 ⟹ XP_022273204
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source CanFam3.1 4 19,759,661 - 19,898,345 (+) NCBI Dog10K_Boxer_Tasha 4 19,891,023 - 20,029,547 (+) NCBI
Sequence:
GGTAAGGGTCGAGAGGGGAGTCCAGCTCCAGTTTGGGTAAATCCAGCGCGCGTTTTGACTCTAGCTCAGTGGTGCAGGGTCCAGCAAAGGCAGAGAGAGCCCCTGCTTCACTCCCTGAGGTCTGTCCT
hide sequence
RefSeq Acc Id:
XM_038473096 ⟹ XP_038329024
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source UMICH_Zoey_3.1 4 19,932,890 - 20,071,946 (+) NCBI
RefSeq Acc Id:
XM_038534146 ⟹ XP_038390074
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source UU_Cfam_GSD_1.0 4 20,478,282 - 20,617,403 (+) NCBI
RefSeq Acc Id:
XM_038598462 ⟹ XP_038454390
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source UNSW_CanFamBas_1.0 4 20,135,757 - 20,275,156 (+) NCBI
RefSeq Acc Id:
XM_038662765 ⟹ XP_038518693
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source ROS_Cfam_1.0 4 20,031,603 - 20,170,708 (+) NCBI
RefSeq Acc Id:
XP_022273204 ⟸ XM_022417496
- UniProtKB:
A0A8C0NNN7 (UniProtKB/TrEMBL), A0A8P0STB2 (UniProtKB/TrEMBL), A0A8P0PLS0 (UniProtKB/TrEMBL)
- Sequence:
MSRSRHARPSRLVRREDLNRKKSTQLKKTCKAANKNVASVKTVSPGKLKQLIHERDVKKKIEPKPPMPVRSLLTRAGAARMNLDRTEVLFQNPESLTCNGFTMALRSTSLSRRLSQPPVIIAKPKKVS
hide sequence
Ensembl Acc Id:
ENSCAFP00000038827 ⟸ ENSCAFT00000043209
RefSeq Acc Id:
XP_038329024 ⟸ XM_038473096
RefSeq Acc Id:
XP_038454390 ⟸ XM_038598462
RefSeq Acc Id:
XP_038518693 ⟸ XM_038662765
- UniProtKB:
A0A8I3MT69 (UniProtKB/TrEMBL), A0A8I3N276 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_038390074 ⟸ XM_038534146
- UniProtKB:
A0A8C0PXL6 (UniProtKB/TrEMBL), A0A8I3N276 (UniProtKB/TrEMBL)
Ensembl Acc Id:
ENSCAFP00845003464 ⟸ ENSCAFT00845004339
Ensembl Acc Id:
ENSCAFP00845003484 ⟸ ENSCAFT00845004362
