SRSF2 (serine and arginine rich splicing factor 2) - Rat Genome Database

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Gene: SRSF2 (serine and arginine rich splicing factor 2) Canis lupus familiaris
Analyze
Symbol: SRSF2
Name: serine and arginine rich splicing factor 2
RGD ID: 12288945
Description: ENCODES a protein that exhibits protein kinase C binding (ortholog); INVOLVED IN regulation of alternative mRNA splicing, via spliceosome (ortholog); response to vitamin E (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); Animal Mammary Neoplasms (ortholog); atypical chronic myeloid leukemia (ortholog); FOUND IN interchromatin granule (ortholog); nuclear speck (ortholog); perichromatin fibrils (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serine/arginine-rich splicing factor 2; SFRS2; splicing factor, arginine/serine-rich 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.194,028,414 - 4,032,371 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl94,028,482 - 4,030,793 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha94,709,901 - 4,713,865 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.094,704,238 - 4,708,205 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl94,704,294 - 4,708,202 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.194,730,113 - 4,734,075 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.094,849,750 - 4,853,714 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.094,930,800 - 4,934,764 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
SRSF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.194,028,414 - 4,032,371 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl94,028,482 - 4,030,793 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha94,709,901 - 4,713,865 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.094,704,238 - 4,708,205 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl94,704,294 - 4,708,202 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.194,730,113 - 4,734,075 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.094,849,750 - 4,853,714 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.094,930,800 - 4,934,764 (+)NCBIUU_Cfam_GSD_1.0
SRSF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381776,734,115 - 76,737,411 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1776,734,115 - 76,737,333 (-)EnsemblGRCh38hg38GRCh38
GRCh371774,730,197 - 74,733,493 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361772,241,792 - 72,245,007 (-)NCBINCBI36Build 36hg18NCBI36
Build 341772,241,793 - 72,245,007NCBI
Celera1771,322,570 - 71,325,785 (-)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1770,157,912 - 70,161,208 (-)NCBIHuRef
CHM1_11774,795,009 - 74,798,305 (-)NCBICHM1_1
T2T-CHM13v2.01777,631,102 - 77,634,398 (-)NCBIT2T-CHM13v2.0
Srsf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911116,740,723 - 116,744,511 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11116,740,727 - 116,743,920 (-)EnsemblGRCm39 Ensembl
GRCm3811116,849,897 - 116,853,675 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11116,849,901 - 116,853,094 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711116,711,211 - 116,714,408 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611116,665,997 - 116,669,172 (-)NCBIMGSCv36mm8
Celera11128,590,379 - 128,593,569 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1181.49NCBI
Srsf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810102,550,962 - 102,554,200 (-)NCBIGRCr8
mRatBN7.210102,052,158 - 102,055,365 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10102,052,314 - 102,055,338 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10107,156,134 - 107,159,309 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010106,619,223 - 106,622,399 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010101,972,989 - 101,976,169 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010105,792,779 - 105,795,986 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10105,792,779 - 105,795,958 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010105,451,332 - 105,454,538 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410106,954,365 - 106,956,807 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110106,968,870 - 106,971,311 (-)NCBI
Celera10100,620,618 - 100,623,797 (-)NCBICelera
Cytogenetic Map10q32.2NCBI
Srsf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555065,569,302 - 5,570,120 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555065,569,280 - 5,572,164 (+)NCBIChiLan1.0ChiLan1.0
SRSF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21992,782,655 - 92,786,542 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11797,608,369 - 97,612,256 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01770,809,931 - 70,813,191 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11776,375,957 - 76,379,258 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1776,375,957 - 76,379,759 (-)Ensemblpanpan1.1panPan2
Srsf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056024,633,549 - 4,636,547 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365941,777,376 - 1,778,164 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365941,775,412 - 1,778,389 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRSF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl124,800,624 - 4,801,675 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1124,800,578 - 4,803,767 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2124,652,818 - 4,653,543 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SRSF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11644,945,193 - 44,948,496 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1644,945,200 - 44,946,438 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607715,682,841 - 15,686,671 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Srsf2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248016,575,325 - 6,578,468 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248016,575,322 - 6,578,429 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SRSF2
36 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003639238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005624053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038484839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038484840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038546509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038546510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038610507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038610508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038675627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038675628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002629699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002629700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005330423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005330424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005330425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005330426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005330427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005330428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005364173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005364174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005364175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005364176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005364177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005364178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005398603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005398604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005398605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005398606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005398607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005398608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005406172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005406180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005406192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005431898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005431899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005431900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005431901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005431902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005431903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_293090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT072629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000008286   ⟹   ENSCAFP00000007679
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl94,028,482 - 4,030,793 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845029126   ⟹   ENSCAFP00845022908
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl94,704,294 - 4,708,202 (+)Ensembl
RefSeq Acc Id: XM_003639238   ⟹   XP_003639286
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.194,028,419 - 4,032,371 (+)NCBI
Dog10K_Boxer_Tasha94,709,907 - 4,713,865 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005624053   ⟹   XP_005624110
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.194,028,414 - 4,031,655 (+)NCBI
Dog10K_Boxer_Tasha94,709,901 - 4,713,149 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038484839   ⟹   XP_038340767
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.194,730,119 - 4,734,075 (+)NCBI
RefSeq Acc Id: XM_038484840   ⟹   XP_038340768
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.194,730,113 - 4,733,359 (+)NCBI
RefSeq Acc Id: XM_038546509   ⟹   XP_038402437
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.094,930,806 - 4,934,764 (+)NCBI
RefSeq Acc Id: XM_038546510   ⟹   XP_038402438
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.094,930,800 - 4,934,048 (+)NCBI
RefSeq Acc Id: XM_038610507   ⟹   XP_038466435
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.094,849,756 - 4,853,714 (+)NCBI
RefSeq Acc Id: XM_038610508   ⟹   XP_038466436
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.094,849,750 - 4,852,998 (+)NCBI
RefSeq Acc Id: XM_038675627   ⟹   XP_038531555
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.094,704,244 - 4,708,205 (+)NCBI
RefSeq Acc Id: XM_038675628   ⟹   XP_038531556
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.094,704,238 - 4,707,489 (+)NCBI
RefSeq Acc Id: XR_002629699
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.194,028,414 - 4,031,655 (+)NCBI
Dog10K_Boxer_Tasha94,709,901 - 4,713,149 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002629700
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.194,028,419 - 4,032,371 (+)NCBI
Dog10K_Boxer_Tasha94,709,907 - 4,713,865 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005330423
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.194,730,114 - 4,734,075 (+)NCBI
RefSeq Acc Id: XR_005330424
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.194,730,114 - 4,734,075 (+)NCBI
RefSeq Acc Id: XR_005330425
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.194,730,113 - 4,733,359 (+)NCBI
RefSeq Acc Id: XR_005330426
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.194,730,119 - 4,734,075 (+)NCBI
RefSeq Acc Id: XR_005330427
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.194,730,114 - 4,734,075 (+)NCBI
RefSeq Acc Id: XR_005330428
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.194,730,114 - 4,734,075 (+)NCBI
RefSeq Acc Id: XR_005364173
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.094,930,801 - 4,934,764 (+)NCBI
RefSeq Acc Id: XR_005364174
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.094,930,801 - 4,934,764 (+)NCBI
RefSeq Acc Id: XR_005364175
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.094,930,800 - 4,934,048 (+)NCBI
RefSeq Acc Id: XR_005364176
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.094,930,806 - 4,934,764 (+)NCBI
RefSeq Acc Id: XR_005364177
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.094,930,801 - 4,934,764 (+)NCBI
RefSeq Acc Id: XR_005364178
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.094,930,801 - 4,934,764 (+)NCBI
RefSeq Acc Id: XR_005398603
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.094,849,751 - 4,853,714 (+)NCBI
RefSeq Acc Id: XR_005398604
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.094,849,751 - 4,853,714 (+)NCBI
RefSeq Acc Id: XR_005398605
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.094,849,750 - 4,852,998 (+)NCBI
RefSeq Acc Id: XR_005398606
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.094,849,756 - 4,853,714 (+)NCBI
RefSeq Acc Id: XR_005398607
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.094,849,751 - 4,853,714 (+)NCBI
RefSeq Acc Id: XR_005398608
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.094,849,751 - 4,853,714 (+)NCBI
RefSeq Acc Id: XR_005406172
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha94,709,902 - 4,713,865 (+)NCBI
RefSeq Acc Id: XR_005406180
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha94,709,902 - 4,713,865 (+)NCBI
RefSeq Acc Id: XR_005406192
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha94,709,902 - 4,713,865 (+)NCBI
RefSeq Acc Id: XR_005431898
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.094,704,239 - 4,708,205 (+)NCBI
RefSeq Acc Id: XR_005431899
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.094,704,239 - 4,708,205 (+)NCBI
RefSeq Acc Id: XR_005431900
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.094,704,238 - 4,707,489 (+)NCBI
RefSeq Acc Id: XR_005431901
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.094,704,244 - 4,708,205 (+)NCBI
RefSeq Acc Id: XR_005431902
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.094,704,239 - 4,708,205 (+)NCBI
RefSeq Acc Id: XR_005431903
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.094,704,239 - 4,708,205 (+)NCBI
RefSeq Acc Id: XR_293090
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.194,028,415 - 4,031,655 (+)NCBI
Dog10K_Boxer_Tasha94,709,902 - 4,713,865 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005624110   ⟸   XM_005624053
- UniProtKB: A0A8C0M746 (UniProtKB/TrEMBL),   A0A8C0JXF9 (UniProtKB/TrEMBL),   A0A8I3NZR1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003639286   ⟸   XM_003639238
- UniProtKB: A0A8C0M746 (UniProtKB/TrEMBL),   A0A8C0JXF9 (UniProtKB/TrEMBL),   A0A8I3NZR1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000007679   ⟸   ENSCAFT00000008286
RefSeq Acc Id: XP_038340768   ⟸   XM_038484840
RefSeq Acc Id: XP_038340767   ⟸   XM_038484839
RefSeq Acc Id: XP_038466436   ⟸   XM_038610508
RefSeq Acc Id: XP_038466435   ⟸   XM_038610507
RefSeq Acc Id: XP_038531556   ⟸   XM_038675628
- UniProtKB: A0A8C0M746 (UniProtKB/TrEMBL),   A0A8C0JXF9 (UniProtKB/TrEMBL),   A0A8I3NZR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038531555   ⟸   XM_038675627
- UniProtKB: A0A8C0M746 (UniProtKB/TrEMBL),   A0A8C0JXF9 (UniProtKB/TrEMBL),   A0A8I3NZR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038402438   ⟸   XM_038546510
- UniProtKB: A0A8C0JXF9 (UniProtKB/TrEMBL),   A0A8C0M746 (UniProtKB/TrEMBL),   A0A8I3NZR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038402437   ⟸   XM_038546509
- UniProtKB: A0A8C0JXF9 (UniProtKB/TrEMBL),   A0A8C0M746 (UniProtKB/TrEMBL),   A0A8I3NZR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845022908   ⟸   ENSCAFT00845029126
Protein Domains
RRM

Promoters
RGD ID:13684406
Promoter ID:EPDNEW_C2474
Type:single initiation site
Name:SRSF2_1
Description:serine and arginine rich splicing factor 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.194,028,669 - 4,028,729EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000005147 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030001861 UniProtKB/TrEMBL
  ENSCAFG00040005343 UniProtKB/TrEMBL
  ENSCAFG00845016418 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000008286.5 UniProtKB/TrEMBL
  ENSCAFT00030003383.1 UniProtKB/TrEMBL
  ENSCAFT00040010018.1 UniProtKB/TrEMBL
  ENSCAFT00845029126 ENTREZGENE
  ENSCAFT00845029126.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
  RRM_dom_euk UniProtKB/TrEMBL
NCBI Gene SRSF2 ENTREZGENE
PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A UniProtKB/TrEMBL
  SC35-LIKE SPLICING FACTOR UniProtKB/TrEMBL
  SERINE/ARGININE RICH SPLICING FACTOR UniProtKB/TrEMBL
  SERINE_ARGININE-RICH SPLICING FACTOR 2 UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A0S2I8H5_CANLF UniProtKB/TrEMBL
  A0A8C0JXF9 ENTREZGENE
  A0A8C0M746 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NZR1 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:55824 ENTREZGENE