FABP9 (fatty acid binding protein 9) - Rat Genome Database

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Gene: FABP9 (fatty acid binding protein 9) Canis lupus familiaris
Analyze
Symbol: FABP9
Name: fatty acid binding protein 9
RGD ID: 12275527
Description: ENCODES a protein that exhibits lipid binding (inferred); INVOLVED IN membrane organization (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: fatty acid binding protein 9, testis; fatty acid-binding protein 9; LOC487016
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12928,635,950 - 28,639,534 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2928,636,082 - 28,639,469 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2928,915,352 - 28,918,937 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02928,767,365 - 28,770,950 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2928,767,425 - 28,770,911 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12928,837,543 - 28,841,128 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02928,851,175 - 28,854,760 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02929,208,019 - 29,211,604 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
FABP9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12928,635,950 - 28,639,534 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2928,636,082 - 28,639,469 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2928,915,352 - 28,918,937 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02928,767,365 - 28,770,950 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2928,767,425 - 28,770,911 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12928,837,543 - 28,841,128 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02928,851,175 - 28,854,760 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02929,208,019 - 29,211,604 (-)NCBIUU_Cfam_GSD_1.0
FABP9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38881,458,253 - 81,461,579 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl881,458,253 - 81,461,579 (-)EnsemblGRCh38hg38GRCh38
GRCh37882,370,488 - 82,373,814 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36882,533,173 - 82,536,313 (-)NCBINCBI36Build 36hg18NCBI36
Celera878,375,577 - 78,378,717 (-)NCBICelera
Cytogenetic Map8q21.13NCBI
HuRef877,860,548 - 77,863,688 (-)NCBIHuRef
CHM1_1882,422,217 - 82,425,358 (-)NCBICHM1_1
T2T-CHM13v2.0881,889,851 - 81,893,177 (-)NCBIT2T-CHM13v2.0
Pmp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39310,244,911 - 10,248,945 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl310,244,911 - 10,248,989 (-)EnsemblGRCm39 Ensembl
GRCm38310,179,851 - 10,183,885 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl310,179,851 - 10,183,929 (-)EnsemblGRCm38mm10GRCm38
MGSCv37310,179,851 - 10,183,885 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36310,162,383 - 10,166,417 (-)NCBIMGSCv36mm8
Celera310,210,078 - 10,214,112 (-)NCBICelera
Cytogenetic Map3A1NCBI
cM Map32.54NCBI
Pmp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8293,518,730 - 93,522,648 (+)NCBIGRCr8
mRatBN7.2291,611,334 - 91,615,252 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl291,611,334 - 91,615,252 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx298,101,602 - 98,105,530 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0296,222,589 - 96,226,517 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0291,279,441 - 91,283,369 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0293,827,504 - 93,831,419 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl293,827,504 - 93,831,419 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02113,582,541 - 113,586,456 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4293,566,284 - 93,570,202 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera287,213,211 - 87,217,129 (+)NCBICelera
Cytogenetic Map2q23NCBI
Fabp9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955444150,997 - 153,846 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955444151,003 - 153,775 (+)NCBIChiLan1.0ChiLan1.0
PMP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2797,178,197 - 97,185,370 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1872,806,025 - 72,813,195 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0877,963,094 - 77,970,272 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1879,586,548 - 79,593,748 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl879,586,553 - 79,593,863 (-)Ensemblpanpan1.1panPan2
Fabp9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530350,543,834 - 50,547,328 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366562,734,302 - 2,737,850 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366562,733,877 - 2,737,842 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FABP9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1876,873,829 - 76,880,644 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl876,875,871 - 76,878,997 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603964,315,963 - 64,319,628 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fabp9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247449,965,031 - 9,967,106 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247449,965,031 - 9,967,106 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FABP9
39 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
5 1 2 14 11 9 1 1 6 7 5 7 10 8

Sequence


Ensembl Acc Id: ENSCAFT00000049916   ⟹   ENSCAFP00000043180
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2928,636,082 - 28,639,469 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845026707   ⟹   ENSCAFP00845021045
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2928,767,425 - 28,770,911 (-)Ensembl
RefSeq Acc Id: XM_038441125   ⟹   XP_038297053
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02928,767,365 - 28,770,950 (-)NCBI
RefSeq Acc Id: XM_038516279   ⟹   XP_038372207
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12928,837,543 - 28,841,128 (-)NCBI
RefSeq Acc Id: XM_038579252   ⟹   XP_038435180
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02929,208,019 - 29,211,604 (-)NCBI
RefSeq Acc Id: XM_038643495   ⟹   XP_038499423
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02928,851,175 - 28,854,760 (-)NCBI
RefSeq Acc Id: XM_544145   ⟹   XP_544145
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12928,635,950 - 28,639,534 (-)NCBI
Dog10K_Boxer_Tasha2928,915,352 - 28,918,937 (-)NCBI
Sequence:
RefSeq Acc Id: XP_544145   ⟸   XM_544145
- UniProtKB: A0A8C0T517 (UniProtKB/TrEMBL),   A0A8I3NVA3 (UniProtKB/TrEMBL),   A0A8C0L7T5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000043180   ⟸   ENSCAFT00000049916
RefSeq Acc Id: XP_038372207   ⟸   XM_038516279
RefSeq Acc Id: XP_038499423   ⟸   XM_038643495
RefSeq Acc Id: XP_038297053   ⟸   XM_038441125
- UniProtKB: A0A8C0T517 (UniProtKB/TrEMBL),   A0A8I3NVA3 (UniProtKB/TrEMBL),   A0A8C0L7T5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038435180   ⟸   XM_038579252
- UniProtKB: A0A8C0L7T5 (UniProtKB/TrEMBL),   A0A8C0T517 (UniProtKB/TrEMBL),   A0A8I3NVA3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845021045   ⟸   ENSCAFT00845026707
Protein Domains
Cytosolic fatty-acid binding proteins


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000008463 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030011222 UniProtKB/TrEMBL
  ENSCAFG00040019758 UniProtKB/TrEMBL
  ENSCAFG00845014937 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000049916.4 UniProtKB/TrEMBL
  ENSCAFT00030020758.1 UniProtKB/TrEMBL
  ENSCAFT00040036532.1 UniProtKB/TrEMBL
  ENSCAFT00845026707 ENTREZGENE
  ENSCAFT00845026707.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.128.20 UniProtKB/TrEMBL
InterPro Calycin UniProtKB/TrEMBL
  Fatty_acid-bd UniProtKB/TrEMBL
  ILBP UniProtKB/TrEMBL
  Lipocln_cytosolic_FA-bd_dom UniProtKB/TrEMBL
KEGG Report cfa:487016 UniProtKB/TrEMBL
NCBI Gene LOC487016 ENTREZGENE
PANTHER FATTY ACID-BINDING PROTEIN 9 UniProtKB/TrEMBL
  PTHR11955 UniProtKB/TrEMBL
Pfam Lipocalin UniProtKB/TrEMBL
PRINTS FATTYACIDBP UniProtKB/TrEMBL
PROSITE FABP UniProtKB/TrEMBL
Superfamily-SCOP SSF50814 UniProtKB/TrEMBL
UniProt A0A8C0L7T5 ENTREZGENE
  A0A8C0T517 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NVA3 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:103675 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-09-12 FABP9  fatty acid binding protein 9  LOC487016  fatty acid-binding protein 9  Symbol and/or name change 5135510 APPROVED