FABP9 (fatty acid binding protein 9) - Rat Genome Database

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Gene: FABP9 (fatty acid binding protein 9) Canis lupus familiaris
Analyze
Symbol: FABP9
Name: fatty acid binding protein 9
RGD ID: 12275527
Description: ENCODES a protein that exhibits lipid binding (inferred); INVOLVED IN membrane organization (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: fatty acid binding protein 9, testis; fatty acid-binding protein 9; LOC487016
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12928,635,950 - 28,639,534 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2928,636,082 - 28,639,469 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2928,915,352 - 28,918,937 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02928,767,365 - 28,770,950 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2928,767,425 - 28,770,911 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12928,837,543 - 28,841,128 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02928,851,175 - 28,854,760 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02929,208,019 - 29,211,604 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
FABP9Doglong-chain fatty acid transport involved_inIBAMGI:95476|PANTHER:PTN008531475|RGD:69048150520179 GO_CentralGO_REF:0000033
FABP9Dogmembrane organization acts_upstream_of_or_withinISORGD:16192499068941 PMID:20334434MGIPMID:20334434

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
FABP9Dogcytoplasm located_inIEAUniProtKB-KW:KW-0963150520179 UniProtGO_REF:0000043
FABP9Dogcytosol is_active_inIBAMGI:101790|MGI:97877|PANTHER:PTN002278936|UniProtKB:P07148|UniProtKB:P09455|UniProtKB:P29373|UniProtKB:P40220150520179 GO_CentralGO_REF:0000033
FABP9Dognucleus is_active_inIBAMGI:101790|MGI:88038|MGI:88491|MGI:95479|PANTHER:PTN002278936|UniProtKB:P07148|UniProtKB:P09455|UniProtKB:P29373|UniProtKB:Q01469|WB:WBGene00002257|WB:WBGene00002260150520179 GO_CentralGO_REF:0000033

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
FABP9Doglipid binding enablesIEAInterPro:IPR000463|InterPro:IPR031259150520179 InterProGO_REF:0000002
FABP9Doglong-chain fatty acid binding enablesIBAPANTHER:PTN008531475|RGD:69048|UniProtKB:P05413150520179 GO_CentralGO_REF:0000033

PMID:30032202  



FABP9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12928,635,950 - 28,639,534 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2928,636,082 - 28,639,469 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2928,915,352 - 28,918,937 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02928,767,365 - 28,770,950 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2928,767,425 - 28,770,911 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12928,837,543 - 28,841,128 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02928,851,175 - 28,854,760 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02929,208,019 - 29,211,604 (-)NCBIUU_Cfam_GSD_1.0
FABP9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38881,458,253 - 81,461,579 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl881,458,253 - 81,461,579 (-)EnsemblGRCh38hg38GRCh38
GRCh37882,370,488 - 82,373,814 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36882,533,173 - 82,536,313 (-)NCBINCBI36Build 36hg18NCBI36
Celera878,375,577 - 78,378,717 (-)NCBICelera
Cytogenetic Map8q21.13NCBI
HuRef877,860,548 - 77,863,688 (-)NCBIHuRef
CHM1_1882,422,217 - 82,425,358 (-)NCBICHM1_1
T2T-CHM13v2.0881,889,851 - 81,893,177 (-)NCBIT2T-CHM13v2.0
Pmp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39310,244,911 - 10,248,945 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl310,244,911 - 10,248,989 (-)EnsemblGRCm39 Ensembl
GRCm38310,179,851 - 10,183,885 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl310,179,851 - 10,183,929 (-)EnsemblGRCm38mm10GRCm38
MGSCv37310,179,851 - 10,183,885 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36310,162,383 - 10,166,417 (-)NCBIMGSCv36mm8
Celera310,210,078 - 10,214,112 (-)NCBICelera
Cytogenetic Map3A1NCBI
cM Map32.54NCBI
Pmp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8293,518,730 - 93,522,648 (+)NCBIGRCr8
mRatBN7.2291,611,334 - 91,615,252 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl291,611,334 - 91,615,252 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx298,101,602 - 98,105,530 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0296,222,589 - 96,226,517 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0291,279,441 - 91,283,369 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0293,827,504 - 93,831,419 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl293,827,504 - 93,831,419 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02113,582,541 - 113,586,456 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4293,566,284 - 93,570,202 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera287,213,211 - 87,217,129 (+)NCBICelera
Cytogenetic Map2q23NCBI
Fabp9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955444150,997 - 153,846 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955444151,003 - 153,775 (+)NCBIChiLan1.0ChiLan1.0
PMP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2797,178,197 - 97,185,370 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1872,806,025 - 72,813,195 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0877,963,094 - 77,970,272 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1879,586,548 - 79,593,748 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl879,586,553 - 79,593,863 (-)Ensemblpanpan1.1panPan2
Fabp9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530350,543,834 - 50,547,328 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366562,734,302 - 2,737,850 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366562,733,877 - 2,737,842 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FABP9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1876,873,829 - 76,880,644 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl876,875,871 - 76,878,997 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603964,315,963 - 64,319,628 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fabp9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247449,965,031 - 9,967,106 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247449,965,031 - 9,967,106 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in FABP9
39 total Variants



adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
5 1 2 14 11 9 1 1 6 7 5 7 10 8



Ensembl Acc Id: ENSCAFT00000049916   ⟹   ENSCAFP00000043180
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2928,636,082 - 28,639,469 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845026707   ⟹   ENSCAFP00845021045
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2928,767,425 - 28,770,911 (-)Ensembl
RefSeq Acc Id: XM_038441125   ⟹   XP_038297053
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02928,767,365 - 28,770,950 (-)NCBI
RefSeq Acc Id: XM_038516279   ⟹   XP_038372207
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12928,837,543 - 28,841,128 (-)NCBI
RefSeq Acc Id: XM_038579252   ⟹   XP_038435180
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02929,208,019 - 29,211,604 (-)NCBI
RefSeq Acc Id: XM_038643495   ⟹   XP_038499423
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02928,851,175 - 28,854,760 (-)NCBI
RefSeq Acc Id: XM_544145   ⟹   XP_544145
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12928,635,950 - 28,639,534 (-)NCBI
Dog10K_Boxer_Tasha2928,915,352 - 28,918,937 (-)NCBI
Sequence:
1 to 10 of 10 rows
Protein RefSeqs XP_038297053 (Get FASTA)   NCBI Sequence Viewer  
  XP_038372207 (Get FASTA)   NCBI Sequence Viewer  
  XP_038435180 (Get FASTA)   NCBI Sequence Viewer  
  XP_038499423 (Get FASTA)   NCBI Sequence Viewer  
  XP_544145 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000043180.2
  ENSCAFP00030018103.1
  ENSCAFP00040031818.1
  ENSCAFP00845021045
  ENSCAFP00845021045.1
1 to 10 of 10 rows
RefSeq Acc Id: XP_544145   ⟸   XM_544145
- UniProtKB: A0A8C0T517 (UniProtKB/TrEMBL),   A0A8I3NVA3 (UniProtKB/TrEMBL),   A0A8C0L7T5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000043180   ⟸   ENSCAFT00000049916
RefSeq Acc Id: XP_038372207   ⟸   XM_038516279
RefSeq Acc Id: XP_038499423   ⟸   XM_038643495
RefSeq Acc Id: XP_038297053   ⟸   XM_038441125
- UniProtKB: A0A8C0T517 (UniProtKB/TrEMBL),   A0A8I3NVA3 (UniProtKB/TrEMBL),   A0A8C0L7T5 (UniProtKB/TrEMBL)
Cytosolic fatty-acid binding proteins



1 to 25 of 25 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCAFG00000008463 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030011222 UniProtKB/TrEMBL
  ENSCAFG00040019758 UniProtKB/TrEMBL
  ENSCAFG00845014937 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000049916.4 UniProtKB/TrEMBL
  ENSCAFT00030020758.1 UniProtKB/TrEMBL
  ENSCAFT00040036532.1 UniProtKB/TrEMBL
  ENSCAFT00845026707 ENTREZGENE
  ENSCAFT00845026707.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.128.20 UniProtKB/TrEMBL
InterPro Calycin UniProtKB/TrEMBL
  Fatty_acid-bd UniProtKB/TrEMBL
  ILBP UniProtKB/TrEMBL
  Lipocln_cytosolic_FA-bd_dom UniProtKB/TrEMBL
KEGG Report cfa:487016 UniProtKB/TrEMBL
NCBI Gene LOC487016 ENTREZGENE
PANTHER PTHR11955 UniProtKB/TrEMBL
Pfam Lipocalin UniProtKB/TrEMBL
PRINTS FATTYACIDBP UniProtKB/TrEMBL
PROSITE FABP UniProtKB/TrEMBL
Superfamily-SCOP SSF50814 UniProtKB/TrEMBL
UniProt A0A8C0L7T5 ENTREZGENE
  A0A8C0T517 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NVA3 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:103675 ENTREZGENE
1 to 25 of 25 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-09-12 FABP9  fatty acid binding protein 9  LOC487016  fatty acid-binding protein 9  Symbol and/or name change 5135510 APPROVED