OR1D10P (olfactory receptor family 1 subfamily D member 10, pseudogene) - Rat Genome Database

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Gene: OR1D10P (olfactory receptor family 1 subfamily D member 10, pseudogene) Canis lupus familiaris
Analyze
Symbol: OR1D10P (Ensembl: OR1D2)
Name: olfactory receptor family 1 subfamily D member 10, pseudogene
RGD ID: 12272161
Description: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. [provided by RefSeq, Jul 2008]
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: LOC611352; olfactory receptor 1D2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1947,061,492 - 47,062,546 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl947,061,492 - 47,062,498 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha946,213,588 - 46,214,594 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0947,896,453 - 47,897,459 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl947,896,453 - 47,897,459 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1946,660,812 - 46,661,818 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0946,957,061 - 46,958,067 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0947,009,991 - 47,010,997 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
OR1D10P
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1947,061,492 - 47,062,546 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl947,061,492 - 47,062,498 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha946,213,588 - 46,214,594 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0947,896,453 - 47,897,459 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl947,896,453 - 47,897,459 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1946,660,812 - 46,661,818 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0946,957,061 - 46,958,067 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0947,009,991 - 47,010,997 (-)NCBIUU_Cfam_GSD_1.0
OR1D2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38173,088,484 - 3,104,422 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl173,088,484 - 3,104,422 (-)EnsemblGRCh38hg38GRCh38
GRCh37172,991,778 - 3,007,716 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36172,942,102 - 2,943,040 (-)NCBINCBI36Build 36hg18NCBI36
Build 34172,942,101 - 2,943,040NCBI
Celera173,013,570 - 3,014,508 (-)NCBICelera
Cytogenetic Map17p13.3ENTREZGENE
HuRef172,887,600 - 2,888,538 (-)NCBIHuRef
CHM1_1173,004,202 - 3,005,140 (-)NCBICHM1_1
T2T-CHM13v2.0172,976,732 - 2,992,671 (-)NCBIT2T-CHM13v2.0
Or1d2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391174,255,497 - 74,256,435 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1174,252,895 - 74,257,044 (+)EnsemblGRCm39 Ensembl
GRCm381174,364,671 - 74,365,609 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1174,362,069 - 74,366,218 (+)EnsemblGRCm38mm10GRCm38
MGSCv371174,178,173 - 74,179,111 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361174,180,866 - 74,181,804 (+)NCBIMGSCv36mm8
Celera1181,877,216 - 81,878,154 (+)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1145.76NCBI
Or1d2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81059,711,377 - 59,712,312 (+)NCBIGRCr8
mRatBN7.21059,212,947 - 59,213,882 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1059,207,257 - 59,214,085 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1063,858,981 - 63,859,916 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01063,364,592 - 63,365,527 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01058,827,074 - 58,828,009 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01061,160,125 - 61,161,060 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1061,152,379 - 61,153,198 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1061,160,125 - 61,161,060 (+)EnsemblRnor6.0rn6Rnor6.0
RGSC_v3.41061,632,798 - 61,633,733 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11061,646,420 - 61,647,356 (+)NCBI
Celera1058,245,853 - 58,246,788 (+)NCBICelera
Cytogenetic Map10q24NCBI
LOC100992356
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21910,657,516 - 10,678,468 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11712,624,688 - 12,644,835 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0173,081,014 - 3,087,934 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1173,083,513 - 3,084,466 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl173,083,513 - 3,084,451 (-)Ensemblpanpan1.1panPan2
LOC103242147
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1162,754,981 - 2,766,197 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl162,765,210 - 2,766,148 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605919,135,063 - 19,136,087 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in OR1D10P
33 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
nervous system
reproductive system
1 3 2 1 1 1 1 3 1 3 4

Sequence


Ensembl Acc Id: ENSCAFT00000030682   ⟹   ENSCAFP00000028516
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl947,061,492 - 47,062,498 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845027154   ⟹   ENSCAFP00845021367
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl947,896,453 - 47,897,459 (-)Ensembl
RefSeq Acc Id: XM_849008   ⟹   XP_854101
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1947,061,492 - 47,062,546 (-)NCBI
Sequence:
Protein Sequences
Ensembl Protein ENSCAFP00000028516.4
  ENSCAFP00845021367.1
RefSeq Acc Id: XP_854101   ⟸   XM_849008
- Sequence:
Ensembl Acc Id: ENSCAFP00000028516   ⟸   ENSCAFT00000030682
Ensembl Acc Id: ENSCAFP00845021367   ⟸   ENSCAFT00845027154
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000019310 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00845015211 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000030682.5 UniProtKB/TrEMBL
  ENSCAFT00845027154.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
NCBI Gene LOC611352 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8I3NRE1_CANLF UniProtKB/TrEMBL
  A0A8P0SN49_CANLF UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-11-24 OR1D10P  olfactory receptor family 1 subfamily D member 10, pseudogene  LOC611352  olfactory receptor 1D2  Symbol and/or name change 5135510 APPROVED