Advanced Search (OLGA)

Gene: OR1D10P (olfactory receptor family 1 subfamily D member 10, pseudogene) Canis lupus familiaris

Subscribe to Updates

Analyze

Symbol:

OR1D10P (Ensembl: OR1D2)

Name:

olfactory receptor family 1 subfamily D member 10, pseudogene

RGD ID:

12272161

Description:

Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. [provided by RefSeq, Jul 2008]

Type:

pseudo (Ensembl: protein-coding)

RefSeq Status:

INFERRED

Previously known as:

LOC611352; olfactory receptor 1D2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	47,061,492 - 47,062,546 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	47,061,492 - 47,062,498 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	46,213,588 - 46,214,594 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	47,896,453 - 47,897,459 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	47,896,453 - 47,897,459 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	46,660,812 - 46,661,818 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	46,957,061 - 46,958,067 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	47,009,991 - 47,010,997 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
OR1D10P	Dog	detection of chemical stimulus involved in sensory perception of smell	involved_in	IEA	GO:0004984	150520179		GOC	GO_REF:0000108
OR1D10P	Dog	G protein-coupled receptor signaling pathway	involved_in	IEA	InterPro:IPR000276 and InterPro:IPR000725	150520179		InterPro	GO_REF:0000002
OR1D10P	Dog	G protein-coupled receptor signaling pathway	involved_in	IEA	UniProtKB-KW:KW-0297	150520179		UniProt	GO_REF:0000043
OR1D10P	Dog	sensory perception of smell	involved_in	IEA	UniProtKB-KW:KW-0552	150520179		UniProt	GO_REF:0000043
OR1D10P	Dog	signal transduction	involved_in	IEA	UniProtKB-KW:KW-0807	150520179		UniProt	GO_REF:0000043
OR1D10P	Dog	signal transduction	involved_in	IBA	PANTHER:PTN001239850 and UniProtKB:P34982	150520179		GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
OR1D10P	Dog	membrane	located_in	IEA	InterPro:IPR000276 more ...	150520179		InterPro	GO_REF:0000002
OR1D10P	Dog	membrane	located_in	IEA	UniProtKB-KW:KW-0472	150520179		UniProt	GO_REF:0000043
OR1D10P	Dog	membrane	located_in	IEA	UniProtKB-SubCell:SL-0162	150520179		UniProt	GO_REF:0000044
OR1D10P	Dog	plasma membrane	located_in	IEA	UniProtKB-SubCell:SL-0039	150520179		UniProt	GO_REF:0000044
OR1D10P	Dog	plasma membrane	is_active_in	IBA	PANTHER:PTN001239850 and UniProtKB:A6NND4	150520179		GO_Central	GO_REF:0000033
OR1D10P	Dog	plasma membrane	located_in	IEA	UniProtKB-KW:KW-1003	150520179		UniProt	GO_REF:0000043

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
OR1D10P	Dog	G protein-coupled receptor activity	enables	IEA	InterPro:IPR000276	150520179		InterPro	GO_REF:0000002
OR1D10P	Dog	G protein-coupled receptor activity	enables	IEA	UniProtKB-KW:KW-0297	150520179		UniProt	GO_REF:0000043
OR1D10P	Dog	identical protein binding	enables	ISO	UniProtKB:P34982	9068941	PMID:18840687 and PMID:19581598	IntAct	PMID:18840687 and PMID:19581598
OR1D10P	Dog	olfactory receptor activity	enables	IEA	InterPro:IPR000725	150520179		InterPro	GO_REF:0000002
OR1D10P	Dog	olfactory receptor activity	enables	IBA	MGI:1333746 more ...	150520179		GO_Central	GO_REF:0000033

OR1D10P
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	47,061,492 - 47,062,546 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	47,061,492 - 47,062,498 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	46,213,588 - 46,214,594 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	47,896,453 - 47,897,459 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	47,896,453 - 47,897,459 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	46,660,812 - 46,661,818 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	46,957,061 - 46,958,067 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	47,009,991 - 47,010,997 (-)	NCBI		UU_Cfam_GSD_1.0

OR1D2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	3,088,484 - 3,104,422 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	3,088,484 - 3,104,422 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	2,991,778 - 3,007,716 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	2,942,102 - 2,943,040 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	2,942,101 - 2,943,040	NCBI
Celera	17	3,013,570 - 3,014,508 (-)	NCBI		Celera
Cytogenetic Map	17	p13.3	ENTREZGENE
HuRef	17	2,887,600 - 2,888,538 (-)	NCBI		HuRef
CHM1_1	17	3,004,202 - 3,005,140 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	2,976,732 - 2,992,671 (-)	NCBI		T2T-CHM13v2.0

Or1d2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	74,255,497 - 74,256,435 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	74,252,895 - 74,257,044 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	74,364,671 - 74,365,609 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	74,362,069 - 74,366,218 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	74,178,173 - 74,179,111 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	74,180,866 - 74,181,804 (+)	NCBI		MGSCv36	mm8
Celera	11	81,877,216 - 81,878,154 (+)	NCBI		Celera
Cytogenetic Map	11	B5	NCBI
cM Map	11	45.76	NCBI

Or1d2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	59,711,377 - 59,712,312 (+)	NCBI		GRCr8
mRatBN7.2	10	59,212,947 - 59,213,882 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	59,207,257 - 59,214,085 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	63,858,981 - 63,859,916 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	63,364,592 - 63,365,527 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	58,827,074 - 58,828,009 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	61,160,125 - 61,161,060 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	61,152,379 - 61,153,198 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	10	61,160,125 - 61,161,060 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
RGSC_v3.4	10	61,632,798 - 61,633,733 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	61,646,420 - 61,647,356 (+)	NCBI
Celera	10	58,245,853 - 58,246,788 (+)	NCBI		Celera
Cytogenetic Map	10	q24	NCBI

LOC100992356
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	10,657,516 - 10,678,468 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	12,624,688 - 12,644,835 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	3,081,014 - 3,087,934 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	3,083,513 - 3,084,466 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	3,083,513 - 3,084,451 (-)	Ensembl	panpan1.1		panPan2

LOC103242147
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	2,754,981 - 2,766,197 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	2,765,210 - 2,766,148 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666059	19,135,063 - 19,136,087 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants in OR1D10P
33 total Variants

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	mesenchyme	mesoderm	nervous system	reproductive system
1	3	2	1	1	1	1	3	1	3	4


RefSeq Transcripts	NG_071020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_849008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000094	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000030682 ⟹ ENSCAFP00000028516

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	9	47,061,492 - 47,062,498 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845027154 ⟹ ENSCAFP00845021367

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	9	47,896,453 - 47,897,459 (-)	Ensembl

RefSeq Acc Id:

XM_849008 ⟹ XP_854101

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	9	47,061,492 - 47,062,546 (-)	NCBI

Sequence:

show sequence

GCATTTAATAAACATTTGTTGGTGTTAATGTTGCAGACAGTAGGAAAAATGGATGAAAGCAACCAAACTATAGTCTCTGAGTTCCTGCTCCTGGGGCTCTCTGAGAGTCCTGAGCAGCAGCGGGTCCA
GTTCTGGATGTTCCTGTCCATGTACCTGGTCACAGTGGTAGGAAATGTGCTCATCATCCTGGCCATCAGCTTTGATCCCCGCCTGCACACTCCCATGTACTTCTTCCTGGCCAACCTCTCCTTCACTG
ACCTCTTCTTCGTCACCAATACAATACCCAAGATGCTGGTGAGCCTCCAGTCTCAGAACAAAGCCATCTCCTATGCAGGGTGTCTGACACAGCTTTACTTCCTGGTCTCCTTGGTGGCCCTGGACAAC
CTCATCCTGGCCACAATGGCATATGACCGCTATGTGGCCATCTGCCGCCCCCTCCACTACACCACAGCCATGAGCCCTGGACTCTGTATTTTGCTCCTCGCCTTGTGTTGGGCACTTTCTGCCCTCTA
TGGCCTCACCCACACCCTCCTAATGACCAGAGTGACATTCTGTGGATCCCGGAAGATCCACTACATCTTCTGTGAGATGTATGTCCTGCTGAGGCTTGCATGCTCCAACACCCAAGTAAATCATACAG
TGCTGATTGCTACAGGATCTTTCATCTTCCTCGCCCCACTAGGGTTCACGATAATGTCCTATGTCTGGATTGTCAGAGCCATCCTCCGAATACCCTCAGCCTCTAGCAAGTACAAAGCCTTCTCCACC
TGTGCCTCCCATTTGGCTGTAGTCTCCCTCTTCTATGGGACACTTTGTATGGTATATCTGCAGCCTCTCCACACCTACTCCATGAAGGACTCAGTAGCCACAGTGATGTATGCTGTGGTGACCCCCAT
GATGAACCCTTTCATCTACAGCCTGAGAAACAAGGACATGCATGGGGCTCTGGGAAGACTGTTCCTAGGGAAAGCCTTCCAGAGGTTGACATGA

hide sequence


Ensembl Protein	ENSCAFP00000028516.4
	ENSCAFP00845021367.1

RefSeq Acc Id:

XP_854101 ⟸ XM_849008

- Sequence:

show sequence

MLQTVGKMDESNQTIVSEFLLLGLSESPEQQRVQFWMFLSMYLVTVVGNVLIILAISFDPRLHTPMYFFLANLSFTDLFFVTNTIPKMLVSLQSQNKAISYAGCLTQLYFLVSLVALDNLILATMAYD
RYVAICRPLHYTTAMSPGLCILLLALCWALSALYGLTHTLLMTRVTFCGSRKIHYIFCEMYVLLRLACSNTQVNHTVLIATGSFIFLAPLGFTIMSYVWIVRAILRIPSASSKYKAFSTCASHLAVVS
LFYGTLCMVYLQPLHTYSMKDSVATVMYAVVTPMMNPFIYSLRNKDMHGALGRLFLGKAFQRLT

hide sequence

Ensembl Acc Id:

ENSCAFP00000028516 ⟸ ENSCAFT00000030682

Ensembl Acc Id:

ENSCAFP00845021367 ⟸ ENSCAFT00845027154

Protein Domains

G-protein coupled receptors family 1 profile

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000019310	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00845015211	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000030682.5	UniProtKB/TrEMBL
	ENSCAFT00845027154.1	UniProtKB/TrEMBL
Gene3D-CATH	Rhodopsin 7-helix transmembrane proteins	UniProtKB/TrEMBL
InterPro	GPCR_Rhodpsn	UniProtKB/TrEMBL
	GPCR_Rhodpsn_7TM	UniProtKB/TrEMBL
	Olfact_rcpt	UniProtKB/TrEMBL
NCBI Gene	LOC611352	ENTREZGENE
PANTHER	OLFACTORY RECEPTOR	UniProtKB/TrEMBL
Pfam	7tm_4	UniProtKB/TrEMBL
PRINTS	GPCRRHODOPSN	UniProtKB/TrEMBL
	OLFACTORYR	UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F1_1	UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F1_2	UniProtKB/TrEMBL
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/TrEMBL
UniProt	A0A8I3NRE1_CANLF	UniProtKB/TrEMBL
	A0A8P0SN49_CANLF	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2020-11-24	OR1D10P	olfactory receptor family 1 subfamily D member 10, pseudogene	LOC611352	olfactory receptor 1D2	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Send us a Message