FABP3 (fatty acid binding protein 3) - Rat Genome Database

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Gene: FABP3 (fatty acid binding protein 3) Canis lupus familiaris
Analyze
Symbol: FABP3
Name: fatty acid binding protein 3
RGD ID: 12189289
Description: ENCODES a protein that exhibits cytoskeletal protein binding (ortholog); fatty acid binding (ortholog); icosatetraenoic acid binding (ortholog); INVOLVED IN brown fat cell differentiation (ortholog); cholesterol homeostasis (ortholog); fatty acid metabolic process (ortholog); PARTICIPATES IN integrin mediated signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Down syndrome (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN extracellular space (ortholog); sarcoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor); fatty acid-binding protein, heart
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1269,651,140 - 69,659,082 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl269,650,322 - 69,658,443 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha266,229,601 - 66,237,545 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0270,215,389 - 70,223,333 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl270,214,573 - 70,226,198 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1267,051,318 - 67,059,262 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0268,048,008 - 68,055,952 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0269,047,575 - 69,055,518 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
FABP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1269,651,140 - 69,659,082 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl269,650,322 - 69,658,443 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha266,229,601 - 66,237,545 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0270,215,389 - 70,223,333 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl270,214,573 - 70,226,198 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1267,051,318 - 67,059,262 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0268,048,008 - 68,055,952 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0269,047,575 - 69,055,518 (+)NCBIUU_Cfam_GSD_1.0
FABP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38131,359,588 - 31,373,076 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl131,365,253 - 31,376,850 (-)EnsemblGRCh38hg38GRCh38
GRCh37131,838,100 - 31,845,923 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36131,610,687 - 31,618,510 (-)NCBINCBI36Build 36hg18NCBI36
Build 34131,507,593 - 31,514,985NCBI
Celera130,094,670 - 30,102,486 (-)NCBICelera
Cytogenetic Map1p35.2NCBI
HuRef129,944,876 - 29,952,692 (-)NCBIHuRef
CHM1_1131,954,007 - 31,961,831 (-)NCBICHM1_1
T2T-CHM13v2.0131,211,868 - 31,225,340 (-)NCBIT2T-CHM13v2.0
Fabp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394130,202,531 - 130,209,256 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4130,202,388 - 130,209,256 (+)EnsemblGRCm39 Ensembl
GRCm384130,308,738 - 130,315,463 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4130,308,595 - 130,315,463 (+)EnsemblGRCm38mm10GRCm38
MGSCv374129,986,022 - 129,992,707 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364129,811,082 - 129,817,767 (+)NCBIMGSCv36mm8
Celera4128,641,729 - 128,648,414 (+)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map463.43NCBI
Fabp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85147,936,027 - 147,942,870 (+)NCBIGRCr8
mRatBN7.25142,651,962 - 142,658,707 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5142,651,956 - 142,658,718 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5145,351,237 - 145,357,980 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05147,121,043 - 147,127,786 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05147,118,434 - 147,125,177 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05148,528,854 - 148,535,597 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5148,528,725 - 148,535,565 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05152,246,250 - 152,252,993 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45149,340,525 - 149,347,268 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15149,350,578 - 149,357,307 (+)NCBI
Celera5141,118,398 - 141,125,141 (+)NCBICelera
Cytogenetic Map5q36NCBI
Fabp3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554529,846,689 - 9,861,971 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554529,851,182 - 9,858,735 (-)NCBIChiLan1.0ChiLan1.0
FABP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21195,456,558 - 195,473,533 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11194,579,251 - 194,592,583 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0130,640,595 - 30,653,450 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1131,660,924 - 31,673,689 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl131,665,270 - 31,673,689 (-)Ensemblpanpan1.1panPan2
Fabp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505848,751,795 - 48,760,226 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647414,574,891 - 14,585,706 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647414,576,582 - 14,584,362 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FABP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl687,942,790 - 87,951,610 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1687,943,003 - 87,950,708 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2681,714,138 - 81,715,645 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FABP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120101,464,899 - 101,472,223 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20101,464,960 - 101,474,350 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603315,202,100 - 15,209,969 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fabp3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476414,698,062 - 14,705,972 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476414,698,062 - 14,705,379 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FABP3
55 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000017685   ⟹   ENSCAFP00000016373
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl269,651,170 - 69,658,443 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000069292   ⟹   ENSCAFP00000054464
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl269,650,322 - 69,657,081 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845010753   ⟹   ENSCAFP00845008390
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl270,214,573 - 70,226,198 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845010772   ⟹   ENSCAFP00845008405
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl270,215,415 - 70,226,198 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845010788   ⟹   ENSCAFP00845008420
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl270,215,426 - 70,225,010 (+)Ensembl
RefSeq Acc Id: XM_005617665   ⟹   XP_005617722
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1269,651,140 - 69,659,082 (+)NCBI
Dog10K_Boxer_Tasha266,229,601 - 66,237,545 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038470474   ⟹   XP_038326402
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1267,051,318 - 67,059,262 (+)NCBI
RefSeq Acc Id: XM_038531317   ⟹   XP_038387245
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0269,047,575 - 69,055,518 (+)NCBI
RefSeq Acc Id: XM_038595538   ⟹   XP_038451466
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0268,048,008 - 68,055,952 (+)NCBI
RefSeq Acc Id: XM_038659623   ⟹   XP_038515551
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0270,215,389 - 70,223,333 (+)NCBI
RefSeq Acc Id: XP_005617722   ⟸   XM_005617665
- UniProtKB: A0A8C0RV08 (UniProtKB/TrEMBL),   A0A8C0LM63 (UniProtKB/TrEMBL),   A0A8I3N3X1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000054464   ⟸   ENSCAFT00000069292
Ensembl Acc Id: ENSCAFP00000016373   ⟸   ENSCAFT00000017685
RefSeq Acc Id: XP_038326402   ⟸   XM_038470474
RefSeq Acc Id: XP_038451466   ⟸   XM_038595538
RefSeq Acc Id: XP_038515551   ⟸   XM_038659623
- UniProtKB: A0A8C0RV08 (UniProtKB/TrEMBL),   A0A8C0LM63 (UniProtKB/TrEMBL),   A0A8I3N3X1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038387245   ⟸   XM_038531317
- UniProtKB: A0A8C0LM63 (UniProtKB/TrEMBL),   A0A8C0RV08 (UniProtKB/TrEMBL),   A0A8I3N3X1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845008390   ⟸   ENSCAFT00845010753
Ensembl Acc Id: ENSCAFP00845008420   ⟸   ENSCAFT00845010788
Ensembl Acc Id: ENSCAFP00845008405   ⟸   ENSCAFT00845010772
Protein Domains
Cytosolic fatty-acid binding proteins

Promoters
RGD ID:13682559
Promoter ID:EPDNEW_C626
Type:single initiation site
Name:FABP3_1
Description:fatty acid binding protein 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1269,651,159 - 69,651,219EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000011117 Ensembl
  ENSCAFG00000050843 UniProtKB/TrEMBL
  ENSCAFG00030022905 UniProtKB/TrEMBL
  ENSCAFG00040000841 UniProtKB/TrEMBL
  ENSCAFG00845006076 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000095353.1 UniProtKB/TrEMBL
  ENSCAFT00000103972.1 UniProtKB/TrEMBL
  ENSCAFT00000107732.1 UniProtKB/TrEMBL
  ENSCAFT00030042090.1 UniProtKB/TrEMBL
  ENSCAFT00030042134.1 UniProtKB/TrEMBL
  ENSCAFT00030042178.1 UniProtKB/TrEMBL
  ENSCAFT00040001520.1 UniProtKB/TrEMBL
  ENSCAFT00845010753.1 UniProtKB/TrEMBL
  ENSCAFT00845010772.1 UniProtKB/TrEMBL
  ENSCAFT00845010788 ENTREZGENE
  ENSCAFT00845010788.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.128.20 UniProtKB/TrEMBL
InterPro Calycin UniProtKB/TrEMBL
  Fatty_acid-bd UniProtKB/TrEMBL
  ILBP UniProtKB/TrEMBL
  Lipocln_cytosolic_FA-bd_dom UniProtKB/TrEMBL
KEGG Report cfa:478156 UniProtKB/TrEMBL
NCBI Gene FABP3 ENTREZGENE
PANTHER FATTY ACID-BINDING PROTEIN, HEART UniProtKB/TrEMBL
  PTHR11955 UniProtKB/TrEMBL
Pfam Lipocalin UniProtKB/TrEMBL
PRINTS FATTYACIDBP UniProtKB/TrEMBL
PROSITE FABP UniProtKB/TrEMBL
Superfamily-SCOP SSF50814 UniProtKB/TrEMBL
UniProt A0A8C0LM63 ENTREZGENE
  A0A8C0P6B4_CANLF UniProtKB/TrEMBL
  A0A8C0RRL2_CANLF UniProtKB/TrEMBL
  A0A8C0RV08 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MXT0_CANLF UniProtKB/TrEMBL
  A0A8I3MYQ5_CANLF UniProtKB/TrEMBL
  A0A8I3N3X1 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:40561 ENTREZGENE