Fabp3 (fatty acid binding protein 3) - Rat Genome Database

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Gene: Fabp3 (fatty acid binding protein 3) Ictidomys tridecemlineatus
Analyze
Symbol: Fabp3
Name: fatty acid binding protein 3
RGD ID: 12718229
Description: ENCODES a protein that exhibits cytoskeletal protein binding (ortholog); fatty acid binding (ortholog); icosatetraenoic acid binding (ortholog); INVOLVED IN brown fat cell differentiation (ortholog); cholesterol homeostasis (ortholog); fatty acid metabolic process (ortholog); PARTICIPATES IN integrin mediated signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Down syndrome (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN extracellular space (ortholog); sarcoplasm (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor); Fatty acid-binding protein 3; fatty acid-binding protein, heart; H-FABP; heart-type fatty acid-binding protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505848,751,795 - 48,760,226 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647414,574,891 - 14,585,706 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647414,576,582 - 14,584,362 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:11779641   PMID:30032202  


Genomics

Comparative Map Data
Fabp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505848,751,795 - 48,760,226 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647414,574,891 - 14,585,706 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647414,576,582 - 14,584,362 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FABP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38131,359,588 - 31,373,076 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl131,365,253 - 31,376,850 (-)EnsemblGRCh38hg38GRCh38
GRCh37131,838,100 - 31,845,923 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36131,610,687 - 31,618,510 (-)NCBINCBI36Build 36hg18NCBI36
Build 34131,507,593 - 31,514,985NCBI
Celera130,094,670 - 30,102,486 (-)NCBICelera
Cytogenetic Map1p35.2NCBI
HuRef129,944,876 - 29,952,692 (-)NCBIHuRef
CHM1_1131,954,007 - 31,961,831 (-)NCBICHM1_1
T2T-CHM13v2.0131,211,868 - 31,225,340 (-)NCBIT2T-CHM13v2.0
Fabp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394130,202,531 - 130,209,256 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4130,202,388 - 130,209,256 (+)EnsemblGRCm39 Ensembl
GRCm384130,308,738 - 130,315,463 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4130,308,595 - 130,315,463 (+)EnsemblGRCm38mm10GRCm38
MGSCv374129,986,022 - 129,992,707 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364129,811,082 - 129,817,767 (+)NCBIMGSCv36mm8
Celera4128,641,729 - 128,648,414 (+)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map463.43NCBI
Fabp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85147,936,027 - 147,942,870 (+)NCBIGRCr8
mRatBN7.25142,651,962 - 142,658,707 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5142,651,956 - 142,658,718 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5145,351,237 - 145,357,980 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05147,121,043 - 147,127,786 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05147,118,434 - 147,125,177 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05148,528,854 - 148,535,597 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5148,528,725 - 148,535,565 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05152,246,250 - 152,252,993 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45149,340,525 - 149,347,268 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15149,350,578 - 149,357,307 (+)NCBI
Celera5141,118,398 - 141,125,141 (+)NCBICelera
Cytogenetic Map5q36NCBI
Fabp3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554529,846,689 - 9,861,971 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554529,851,182 - 9,858,735 (-)NCBIChiLan1.0ChiLan1.0
FABP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21195,456,558 - 195,473,533 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11194,579,251 - 194,592,583 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0130,640,595 - 30,653,450 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1131,660,924 - 31,673,689 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl131,665,270 - 31,673,689 (-)Ensemblpanpan1.1panPan2
FABP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1269,651,140 - 69,659,082 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl269,650,322 - 69,658,443 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha266,229,601 - 66,237,545 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0270,215,389 - 70,223,333 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl270,214,573 - 70,226,198 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1267,051,318 - 67,059,262 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0268,048,008 - 68,055,952 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0269,047,575 - 69,055,518 (+)NCBIUU_Cfam_GSD_1.0
FABP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl687,942,790 - 87,951,610 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1687,943,003 - 87,950,708 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2681,714,138 - 81,715,645 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FABP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120101,464,899 - 101,472,223 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20101,464,960 - 101,474,350 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603315,202,100 - 15,209,969 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fabp3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476414,698,062 - 14,705,972 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476414,698,062 - 14,705,379 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000003834   ⟹   ENSSTOP00000003437
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647414,574,891 - 14,585,706 (-)Ensembl
RefSeq Acc Id: NM_001282265   ⟹   NP_001269194
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505848,751,800 - 48,759,580 (-)NCBI
SpeTri2.0NW_00493647414,576,582 - 14,584,362 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040287227   ⟹   XP_040143161
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505848,751,795 - 48,760,185 (-)NCBI
RefSeq Acc Id: XM_040287228   ⟹   XP_040143162
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505848,751,795 - 48,760,226 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001269194 (Get FASTA)   NCBI Sequence Viewer  
  XP_040143161 (Get FASTA)   NCBI Sequence Viewer  
  XP_040143162 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAK08083 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000003437.2
  ENSSTOP00000023999.1
GenBank Protein Q99P61 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001269194   ⟸   NM_001282265
- UniProtKB: Q99P61 (UniProtKB/Swiss-Prot),   A0A287CRT8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040143162   ⟸   XM_040287228
- Peptide Label: isoform X1
- UniProtKB: Q99P61 (UniProtKB/Swiss-Prot),   A0A287CRT8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040143161   ⟸   XM_040287227
- Peptide Label: isoform X1
- UniProtKB: Q99P61 (UniProtKB/Swiss-Prot),   A0A287CRT8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000003437   ⟸   ENSSTOT00000003834
Protein Domains
Cytosolic fatty-acid binding proteins


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000003842 Ensembl, UniProtKB/Swiss-Prot
  ENSSTOG00000031455 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000003834.3 UniProtKB/Swiss-Prot
  ENSSTOT00000040831.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.128.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Calycin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fatty_acid-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ILBP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lipocln_cytosolic_FA-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene Fabp3 ENTREZGENE
PANTHER FATTY ACID BINDING PROTEIN UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
Pfam Lipocalin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS FATTYACIDBP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE FABP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Lipocalins UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt A0A287CRT8 ENTREZGENE, UniProtKB/TrEMBL
  FABPH_ICTTR UniProtKB/Swiss-Prot, ENTREZGENE