ARID3C (AT-rich interaction domain 3C) - Rat Genome Database

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Gene: ARID3C (AT-rich interaction domain 3C) Canis lupus familiaris
Analyze
Symbol: ARID3C
Name: AT-rich interaction domain 3C
RGD ID: 12181510
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); anauxetic dysplasia (ortholog); autosomal recessive distal hereditary motor neuronopathy 2 (ortholog); FOUND IN cytoplasm (inferred); membrane raft (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AT-rich interactive domain-containing protein 3C
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11151,294,605 - 51,301,979 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1151,295,030 - 51,301,547 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1149,922,506 - 49,930,320 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01152,234,892 - 52,242,709 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1152,235,759 - 52,242,279 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11150,897,603 - 50,905,422 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01150,765,803 - 50,773,609 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01151,530,526 - 51,538,340 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ARID3C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11151,294,605 - 51,301,979 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1151,295,030 - 51,301,547 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1149,922,506 - 49,930,320 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01152,234,892 - 52,242,709 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1152,235,759 - 52,242,279 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11150,897,603 - 50,905,422 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01150,765,803 - 50,773,609 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01151,530,526 - 51,538,340 (-)NCBIUU_Cfam_GSD_1.0
ARID3C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38934,621,049 - 34,633,011 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl934,621,049 - 34,629,066 (-)EnsemblGRCh38hg38GRCh38
GRCh37934,621,046 - 34,629,063 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36934,611,455 - 34,618,011 (-)NCBINCBI36Build 36hg18NCBI36
Celera934,552,959 - 34,559,515 (-)NCBICelera
Cytogenetic Map9p13.3NCBI
HuRef934,575,737 - 34,582,294 (-)NCBIHuRef
CHM1_1934,621,235 - 34,627,787 (-)NCBICHM1_1
T2T-CHM13v2.0934,639,596 - 34,650,042 (-)NCBIT2T-CHM13v2.0
Arid3c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39441,723,830 - 41,731,226 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl441,723,836 - 41,731,142 (-)EnsemblGRCm39 Ensembl
GRCm38441,723,831 - 41,731,142 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl441,723,836 - 41,731,142 (-)EnsemblGRCm38mm10GRCm38
MGSCv37441,670,868 - 41,678,174 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36441,912,903 - 41,918,863 (-)NCBIMGSCv36mm8
Celera441,384,044 - 41,391,382 (-)NCBICelera
Cytogenetic Map4A5NCBI
cM Map422.01NCBI
Arid3c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8561,685,511 - 61,692,821 (-)NCBIGRCr8
mRatBN7.2556,889,649 - 56,896,959 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl556,890,042 - 56,895,888 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx558,869,550 - 58,875,393 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0560,688,382 - 60,694,225 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0560,674,253 - 60,680,097 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0558,107,182 - 58,114,632 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl558,107,707 - 58,113,553 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0562,631,772 - 62,637,618 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4559,148,421 - 59,154,267 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera555,484,083 - 55,489,929 (-)NCBICelera
Cytogenetic Map5q22NCBI
Arid3c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554721,504,032 - 1,510,590 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554721,503,448 - 1,510,965 (+)NCBIChiLan1.0ChiLan1.0
ARID3C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21189,974,694 - 89,982,711 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1989,975,061 - 89,989,017 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0934,457,638 - 34,466,425 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1935,267,063 - 35,275,057 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl935,267,063 - 35,275,057 (-)Ensemblpanpan1.1panPan2
Arid3c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947166,157,164 - 166,165,371 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365242,705,121 - 2,711,557 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365242,705,112 - 2,711,557 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARID3C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1032,172,871 - 32,180,604 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11032,171,233 - 32,187,239 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21036,312,954 - 36,321,471 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Arid3c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473639,016,483 - 39,023,668 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473639,016,483 - 39,023,701 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ARID3C
44 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 1
Low 4 5
Below cutoff 4 1 16 2 5 2 2 4 6 8 5 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000028460   ⟹   ENSCAFP00000026469
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1151,295,030 - 51,301,547 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845043527   ⟹   ENSCAFP00845034101
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1152,235,759 - 52,242,279 (-)Ensembl
RefSeq Acc Id: XM_005626734   ⟹   XP_005626791
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11151,294,605 - 51,301,979 (-)NCBI
Dog10K_Boxer_Tasha1149,922,506 - 49,930,320 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038490554   ⟹   XP_038346482
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11150,897,603 - 50,905,422 (-)NCBI
RefSeq Acc Id: XM_038490555   ⟹   XP_038346483
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11150,897,603 - 50,905,422 (-)NCBI
RefSeq Acc Id: XM_038552668   ⟹   XP_038408596
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01151,530,526 - 51,538,340 (-)NCBI
RefSeq Acc Id: XM_038552669   ⟹   XP_038408597
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01151,530,526 - 51,538,340 (-)NCBI
RefSeq Acc Id: XM_038616529   ⟹   XP_038472457
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01150,765,803 - 50,773,609 (-)NCBI
RefSeq Acc Id: XM_038616530   ⟹   XP_038472458
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01150,765,803 - 50,773,609 (-)NCBI
RefSeq Acc Id: XM_038681997   ⟹   XP_038537925
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01152,234,892 - 52,242,709 (-)NCBI
RefSeq Acc Id: XM_038681998   ⟹   XP_038537926
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01152,234,892 - 52,242,709 (-)NCBI
RefSeq Acc Id: XM_849563   ⟹   XP_854656
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11151,294,605 - 51,301,979 (-)NCBI
Dog10K_Boxer_Tasha1149,922,506 - 49,930,320 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005626791   ⟸   XM_005626734
- Peptide Label: isoform X2
- UniProtKB: A0A8C0KTV1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_854656   ⟸   XM_849563
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MCN7 (UniProtKB/TrEMBL),   A0A8I3PR68 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000026469   ⟸   ENSCAFT00000028460
RefSeq Acc Id: XP_038346483   ⟸   XM_038490555
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038346482   ⟸   XM_038490554
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038472458   ⟸   XM_038616530
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038472457   ⟸   XM_038616529
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038537926   ⟸   XM_038681998
- Peptide Label: isoform X2
- UniProtKB: A0A8C0KTV1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038537925   ⟸   XM_038681997
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MCN7 (UniProtKB/TrEMBL),   A0A8I3PR68 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038408597   ⟸   XM_038552669
- Peptide Label: isoform X2
- UniProtKB: A0A8C0KTV1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038408596   ⟸   XM_038552668
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MCN7 (UniProtKB/TrEMBL),   A0A8I3PR68 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845034101   ⟸   ENSCAFT00845043527
Protein Domains
ARID   REKLES


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000024873 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030005001 UniProtKB/TrEMBL
  ENSCAFG00040009088 UniProtKB/TrEMBL
  ENSCAFG00845024639 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000028460.6 UniProtKB/TrEMBL
  ENSCAFT00030009238.1 UniProtKB/TrEMBL
  ENSCAFT00040016848.1 UniProtKB/TrEMBL
  ENSCAFT00845043527 ENTREZGENE
  ENSCAFT00845043527.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.60 UniProtKB/TrEMBL
InterPro ARI3A/B/C UniProtKB/TrEMBL
  ARID_dom UniProtKB/TrEMBL
  ARID_dom_sf UniProtKB/TrEMBL
  REKLES_domain UniProtKB/TrEMBL
NCBI Gene ARID3C ENTREZGENE
PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 3C UniProtKB/TrEMBL
  PTHR15348 UniProtKB/TrEMBL
Pfam ARID UniProtKB/TrEMBL
PROSITE ARID UniProtKB/TrEMBL
  REKLES UniProtKB/TrEMBL
SMART ARID UniProtKB/TrEMBL
  BRIGHT UniProtKB/TrEMBL
Superfamily-SCOP SSF46774 UniProtKB/TrEMBL
UniProt A0A8C0KTV1 ENTREZGENE
  A0A8C0MCN7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PR68 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:38097 ENTREZGENE