Symbol:
ARID3C
Name:
AT-rich interaction domain 3C
RGD ID:
11752584
Description:
ENCODES a protein that exhibits chromatin binding (inferred); DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); INVOLVED IN macrophage differentiation (inferred); positive regulation of transcription by RNA polymerase II (inferred); regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); anauxetic dysplasia (ortholog); autosomal recessive distal hereditary motor neuronopathy 2 (ortholog); FOUND IN cytoplasm (inferred); membrane raft (inferred); nucleus (inferred)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
AT-rich interactive domain-containing protein 3C
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 11 89,974,694 - 89,982,711 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 9 89,975,061 - 89,989,017 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 9 34,457,638 - 34,466,425 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 9 35,267,063 - 35,275,057 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 9 35,267,063 - 35,275,057 (-) Ensembl panpan1.1 panPan2
JBrowse:
View Region in Genome Browser (JBrowse)
Model
ARID3C (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 11 89,974,694 - 89,982,711 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 9 89,975,061 - 89,989,017 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 9 34,457,638 - 34,466,425 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 9 35,267,063 - 35,275,057 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 9 35,267,063 - 35,275,057 (-) Ensembl panpan1.1 panPan2
ARID3C (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 9 34,621,049 - 34,633,011 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 9 34,621,049 - 34,629,066 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 9 34,621,046 - 34,629,063 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 9 34,611,455 - 34,618,011 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Celera 9 34,552,959 - 34,559,515 (-) NCBI Celera Cytogenetic Map 9 p13.3 NCBI HuRef 9 34,575,737 - 34,582,294 (-) NCBI HuRef CHM1_1 9 34,621,235 - 34,627,787 (-) NCBI CHM1_1 T2T-CHM13v2.0 9 34,639,596 - 34,650,042 (-) NCBI T2T-CHM13v2.0
Arid3c (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 4 41,723,830 - 41,731,226 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 4 41,723,836 - 41,731,142 (-) Ensembl GRCm39 Ensembl GRCm38 4 41,723,831 - 41,731,142 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 4 41,723,836 - 41,731,142 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 4 41,670,868 - 41,678,174 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 4 41,912,903 - 41,918,863 (-) NCBI MGSCv36 mm8 Celera 4 41,384,044 - 41,391,382 (-) NCBI Celera Cytogenetic Map 4 A5 NCBI cM Map 4 22.01 NCBI
Arid3c (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 5 61,685,511 - 61,692,821 (-) NCBI GRCr8 mRatBN7.2 5 56,889,649 - 56,896,959 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 5 56,890,042 - 56,895,888 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 5 58,869,550 - 58,875,393 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 5 60,688,382 - 60,694,225 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 5 60,674,253 - 60,680,097 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 5 58,107,182 - 58,114,632 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 5 58,107,707 - 58,113,553 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 5 62,631,772 - 62,637,618 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 5 59,148,421 - 59,154,267 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 Celera 5 55,484,083 - 55,489,929 (-) NCBI Celera Cytogenetic Map 5 q22 NCBI
Arid3c (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955472 1,504,032 - 1,510,590 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955472 1,503,448 - 1,510,965 (+) NCBI ChiLan1.0 ChiLan1.0
ARID3C (Canis lupus familiaris - dog)
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 11 51,294,605 - 51,301,979 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 11 51,295,030 - 51,301,547 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 11 49,922,506 - 49,930,320 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 11 52,234,892 - 52,242,709 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 11 52,235,759 - 52,242,279 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 11 50,897,603 - 50,905,422 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 11 50,765,803 - 50,773,609 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 11 51,530,526 - 51,538,340 (-) NCBI UU_Cfam_GSD_1.0
Arid3c (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024404947 166,157,164 - 166,165,371 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936524 2,705,121 - 2,711,557 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936524 2,705,112 - 2,711,557 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
ARID3C (Sus scrofa - pig)
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 10 32,172,871 - 32,180,604 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 10 32,171,233 - 32,187,239 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 10 36,312,954 - 36,321,471 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
Arid3c (Heterocephalus glaber - naked mole-rat)
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Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSPPAT00000055744 ⟹ ENSPPAP00000032873
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source PanPan1.1 Ensembl 9 35,267,063 - 35,275,057 (-) Ensembl
RefSeq Acc Id:
XM_003829809 ⟹ XP_003829857
Type:
CODING
Position:
Bonobo Assembly Chr Position (strand) Source NHGRI_mPanPan1-v2 11 89,974,694 - 89,982,711 (+) NCBI NHGRI_mPanPan1 9 89,975,061 - 89,989,017 (+) NCBI Mhudiblu_PPA_v0 9 34,457,638 - 34,466,425 (-) NCBI PanPan1.1 9 35,267,063 - 35,275,057 (-) NCBI
Sequence:
CAGCGGGAGCGCACCGCCGGGACCCAGCCGAGGCCAGGGCCGCCTGGGAGGCGGGCGGAGCAAAGGCAGCGCCGTGGAGACGCCAGGAGCAGCGGGCCACGCCAGGCAGGCGGCCCTTTCCTCGGGGT CCCGCCTGGTACCAGGGACCCCCTCAGCTGGGGGACTGCGCCTGGAAGCTGTCATGGAGGCCCTGCAGAAGCAGCAGGCAGCTCGGCTGGCCCAGGGGGTGGGGCCATTGGCCCCTGCATGCCCGCTG CTGCCACCGCAGCCTCTCCTGCCTGACCACCGGACCCTACAGGCCCCTGAGGGGGCCTTGGGGAATGTTGGGGCTGAGGAAGAGGAAGATGCTGAAGAAGATGAGGAGAAGCGGGAGGAAGCCGGGGC AGAGGAGGAGGCAGCTGAGGAGAGCCGTCCAGGGGCCCAGGGCCCCAGCTCGCCTTCTAGCCAGCCCCCTGGACTCCATCCCCACGAGTGGACCTACGAGGAACAATTCAAGCAGCTGTATGAGCTCG ATGCAGACCCCAAGAGGAAGGAATTTCTGGATGACCTGTTTAGCTTCATGCAAAAGAGGGGGACGCCAGTGAACCGCGTGCCCATCATGGCGAAGCAGGTGCTCGACCTGTACGCTCTGTTTCGCCTG GTGACCGCCAAGGGCGGCCTGGTGGAAGTCATCAACCGCAAAGTGTGGCGGGAAGTCACGCGCGGCCTCAGCCTACCCACCACCATCACCTCGGCCGCCTTCACTCTACGCACCCAGTACATGAAGTA CCTGTACCCGTACGAGTGCGAGACTCGAGCGCTCAGCTCCCCAGGGGAGCTCCAGGCCGCCATAGACAGCAATCGGCGCGAGGGCCGTCGCCAGGCTTACACCGCTACTCCGCTCTTCGGCTTGGCAG GGCCGCCCCCTCGGGGCGCTCAGGACCCAGCCTTGGGTCCCGGCCCCGCCCCTCCGGCGACCCAGTCCAGCCCTGGCCCAGCCCAGGGTTCCACCTCCGGCCTGCCAGCGCATGCATGCGCTCAGCTG AGTCCAAGCCCTATTAAGAAAGAGGAGAGTGGAATTCCAAACCCTCGCCTGGCACTGCCTGTGGGCCTGGCACTGGGACCTACACGGGAGAAATTGGCACCAGAGGAGCCCCCAGAGAAGAGAGCTGT GCTGATGGGGCCTATGGACCCACCTCGACCTGGCATGCCCCCCAGTTTCCTGCCCCGTGGCAAGGTTCCCCTGAGGGAAGAGCGGCTGGATGGGCCTCTTAATCTGGCAGGCAGTGGCATCAGCAGTA TCAACATGGCCCTAGAGATCAACGGGGTGGTCTACACTGGTGTCCTCTTTGCCCGCCGCCAGCCTGTGCCAGCTTCCCAGGGTCCAACCAACCCTGCACCCCCACCCTCCACAGGGCCCCCTTCCAGC ATCTTGCCCTGAGAGGTCCTACTTGAAACTAAGAGTCCCAGCCCCATTGCTGAGGGGGGAGGAGACCCCCTGCTTTGATTCTTTCTGGCTGCCCACTCTGGGACCCAGCCCTGGGAGGGGACGACACC TCCCATGCCATGTGGACTTAAAACCAAAGTTTCTTTTGATGTTACACCTACCTCATTGTAAAGGGAGGGCATCTCCTCCCTGGCCAATTCCAGCAGCACCTACCAAAGGGTTCTTCCTCCAGTAACCC CATCATCTCCTCATGTGTTACCTCTGTCAATGTCATCTCTAGGACCCTACCCTTTTGAGTCAGCCCTGCTTCTCTTCAGGAGCCAAGTGAAAGGTTGGGTTGGGGTACTGTGAAAGAGACATCCCTCA GGTCACATCTAGACAATAAAGCTGCGATCCCTCCCTC
hide sequence
RefSeq Acc Id:
XP_003829857 ⟸ XM_003829809
- UniProtKB:
A0A2R9BT85 (UniProtKB/TrEMBL)
- Sequence:
MEALQKQQAARLAQGVGPLAPACPLLPPQPLLPDHRTLQAPEGALGNVGAEEEEDAEEDEEKREEAGAEEEAAEESRPGAQGPSSPSSQPPGLHPHEWTYEEQFKQLYELDADPKRKEFLDDLFSFMQ KRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKYLYPYECETRALSSPGELQAAIDSNRREGRRQAYTATPLFGLAGPPPRGAQDPALGPGPAP PATQSSPGPAQGSTSGLPAHACAQLSPSPIKKEESGIPNPRLALPVGLALGPTREKLAPEEPPEKRAVLMGPMDPPRPGMPPSFLPRGKVPLREERLDGPLNLAGSGISSINMALEINGVVYTGVLFA RRQPVPASQGPTNPAPPPSTGPPSSILP
hide sequence
Ensembl Acc Id:
ENSPPAP00000032873 ⟸ ENSPPAT00000055744