Symbol:
MIR193A
Name:
microRNA mir-193a (Ensembl:microRNA 193a)
RGD ID:
12155731
Description:
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type:
ncrna (Ensembl: miRNA)
RefSeq Status:
PROVISIONAL
Previously known as:
cfa-mir-193a; microRNA 193a
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 9 41,316,481 - 41,316,536 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 9 41,316,474 - 41,316,542 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 9 40,478,752 - 40,478,807 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 9 42,137,126 - 42,137,181 (-) NCBI ROS_Cfam_1.0 UMICH_Zoey_3.1 9 40,921,299 - 40,921,354 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 9 41,216,119 - 41,216,174 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 9 41,291,881 - 41,291,936 (-) NCBI UU_Cfam_GSD_1.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
MIR193A Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 9 41,316,481 - 41,316,536 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 9 41,316,474 - 41,316,542 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 9 40,478,752 - 40,478,807 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 9 42,137,126 - 42,137,181 (-) NCBI ROS_Cfam_1.0 UMICH_Zoey_3.1 9 40,921,299 - 40,921,354 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 9 41,216,119 - 41,216,174 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 9 41,291,881 - 41,291,936 (-) NCBI UU_Cfam_GSD_1.0
MIR193A Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 17 31,559,996 - 31,560,083 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 17 31,559,996 - 31,560,083 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 17 29,887,015 - 29,887,102 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 17 26,911,127 - 26,911,214 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Celera 17 26,806,777 - 26,806,864 (+) NCBI Celera Cytogenetic Map 17 q11.2 NCBI HuRef 17 26,097,427 - 26,097,514 (+) NCBI HuRef CHM1_1 17 29,949,637 - 29,949,724 (+) NCBI CHM1_1 T2T-CHM13v2.0 17 32,505,775 - 32,505,862 (+) NCBI T2T-CHM13v2.0
Mir193a Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 11 79,602,795 - 79,602,860 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 11 79,602,795 - 79,602,860 (+) Ensembl GRCm39 Ensembl GRCm38 11 79,711,969 - 79,712,034 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 11 79,711,969 - 79,712,034 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 11 79,525,471 - 79,525,536 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 Celera 11 89,344,581 - 89,344,646 (+) NCBI Celera Cytogenetic Map 11 B5 NCBI cM Map 11 47.02 NCBI
Mir193a Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 10 65,170,306 - 65,170,417 (-) NCBI GRCr8 mRatBN7.2 10 64,672,343 - 64,672,454 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 10 64,672,343 - 64,672,454 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 10 69,300,596 - 69,300,707 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 10 68,805,990 - 68,806,101 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 10 64,269,827 - 64,269,938 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 10 67,065,885 - 67,065,996 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 10 67,065,885 - 67,065,996 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 10 64,583,957 - 64,584,068 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 Celera 10 63,641,174 - 63,641,285 (-) NCBI Celera Cytogenetic Map 10 q25 NCBI
MIR193A Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 12 43,336,969 - 43,337,048 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 12 43,336,969 - 43,337,048 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 12 45,165,038 - 45,165,117 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
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Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
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Ensembl Acc Id:
ENSCAFT00000039976
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source CanFam3.1 Ensembl 9 41,316,474 - 41,316,542 (-) Ensembl
RefSeq Acc Id:
NR_049385
RefSeq Status:
PROVISIONAL
Type:
NON-CODING
Position:
Dog Assembly Chr Position (strand) Source CanFam3.1 9 41,316,481 - 41,316,536 (-) NCBI Dog10K_Boxer_Tasha 9 40,478,752 - 40,478,807 (-) NCBI ROS_Cfam_1.0 9 42,137,126 - 42,137,181 (-) NCBI UMICH_Zoey_3.1 9 40,921,299 - 40,921,354 (-) NCBI UNSW_CanFamBas_1.0 9 41,216,119 - 41,216,174 (-) NCBI UU_Cfam_GSD_1.0 9 41,291,881 - 41,291,936 (-) NCBI
Sequence:
TGGGTCTTTGCGGGCGAGATGAGGGTGTCGGTTCAACTGGCCTACAAAGTCCCAGT
hide sequence
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2019-04-02
MIR193A
microRNA mir-193a
microRNA 193a
Symbol and/or name change
5135510 APPROVED
